mRNA_Ecto-sp9_F_contig1011.146.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1011.146.1 vs.
Match: CRC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX0_9PHAE) HSP 1 Score: 339 bits (869), Expect = 4.560e-104 Identity = 236/325 (72.62%), Postives = 241/325 (74.15%), Query Frame = 1
Query: 1 CNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAFVSKFERRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGGRKRRAVESPAAAXXXXXATPRTP--PRMSPRVRGA----------------------------------------------------------ALRGGPLFSSRALGNGAGGCGGLSGTPPADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ASAVADCAVAQSLLDMGGTPLQVQDEEGAEGKFELSVAAGSPASARLLQGQQKKGS 789
CNCKKSKCLKLYCECFQRQQYC GCNC+ECLNTERTEDLRQLAIQGT+ERNPQAFVSKFERRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGGRKRRAVESPA XXXXX PRMSPRVRGA ALRGGPLFS RALGNGAG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ASAVADCAVA+SLLDMGGTPLQVQDEEGAEGKFELS+AAGSPASARLLQGQQK+GS
Sbjct: 680 CNCKKSKCLKLYCECFQRQQYCKGCNCMECLNTERTEDLRQLAIQGTMERNPQAFVSKFERRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGGRKRRAVESPAXXXXXXXXXXXXXXXPRMSPRVRGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSTPAPPLAEALRGGPLFS-RALGNGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSASAVADCAVARSLLDMGGTPLQVQDEEGAEGKFELSLAAGSPASARLLQGQQKRGS 1003
BLAST of mRNA_Ecto-sp9_F_contig1011.146.1 vs.
Match: Tesmin-like, (animal TCX proteins are associated with development of both male and female reproductiv n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF0_ECTSI) HSP 1 Score: 266 bits (681), Expect = 1.320e-79 Identity = 198/294 (67.35%), Postives = 199/294 (67.69%), Query Frame = 1
Query: 1 CNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAFVSKFERRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGGRKRRAVESPAAAXXXXXATPRTPPRMSP-----RVRGA----------------------------------------------------------ALRGGPLFSSRALGNGAGGCGGLSGTPPADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAS----AVADCAVAQSLLDMGGTP 681
CNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAFVSKFERRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGGRKRRAVESPAA XXXX RVRGA ALRGGPLFSSRALGNGA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AVADCAVA+SLLDMGGTP
Sbjct: 440 CNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAFVSKFERRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGGRKRRAVESPAAVAXXXXXXXXXXXXXXXXXXXXRVRGAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDSTPAPPLAEALRGGPLFSSRALGNGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVADCAVARSLLDMGGTP 733
BLAST of mRNA_Ecto-sp9_F_contig1011.146.1 vs.
Match: CRC (domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YAE3_9CHLO) HSP 1 Score: 155 bits (392), Expect = 3.570e-40 Identity = 68/114 (59.65%), Postives = 79/114 (69.30%), Query Frame = 1
Query: 1 CNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAFVSKFERRA-------GKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEG 321
CNCK S+CLKLYCECF +YC+GCNCV C N E RQ A++ +ERNP AF K + A G HN GCNCKKS CLKKYCECFQAG+ CG NCKC++CKN+EG
Sbjct: 63 CNCKNSRCLKLYCECFASGRYCDGCNCVNCCNNMENESTRQSAVEAILERNPNAFRPKIQAGASEEGTVAGTARHNKGCNCKKSGCLKKYCECFQAGIYCGDNCKCIDCKNFEG 176
BLAST of mRNA_Ecto-sp9_F_contig1011.146.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLM9_HETAK) HSP 1 Score: 148 bits (374), Expect = 5.840e-40 Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = 1
Query: 1 CNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAFVSKFERRA-GKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKN 312
CNCKKSKCLKLYCECF +YC CNCV+C N TE RQ AI+ +ERNP+AF SK R A K+ H+ GCNCKKS+CLKKYCECFQAGV C CKC C N
Sbjct: 46 CNCKKSKCLKLYCECFAAGKYCGACNCVDCQNAPATEAQRQDAIKAILERNPKAFSSKINREALHKQHHSTGCNCKKSSCLKKYCECFQAGVPCSARCKCAACLN 150
BLAST of mRNA_Ecto-sp9_F_contig1011.146.1 vs.
Match: Tesmin (TSO1-like CXC 5 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TP82_CHLSO) HSP 1 Score: 156 bits (395), Expect = 2.400e-39 Identity = 73/127 (57.48%), Postives = 84/127 (66.14%), Query Frame = 1
Query: 1 CNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAFVSKF-----ERRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGGRKRRAVESPAA 366
CNCK S+CLKLYCECF +YC+GCNC C N E RQ A++ +ERNP AF K R AG HN GCNCKKS CLKKYCECFQAG+ C NCKC++CKNYEG+ R A+ SP A
Sbjct: 133 CNCKNSRCLKLYCECFASGRYCDGCNCTNCYNNRDHEATRQAAVEAILERNPNAFRPKIAGGSDSRHAGGARHNKGCNCKKSGCLKKYCECFQAGIVCSDNCKCLDCKNYEGS---EAREALISPQA 256
BLAST of mRNA_Ecto-sp9_F_contig1011.146.1 vs.
Match: Lin-54-like (protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SIS7_AUXPR) HSP 1 Score: 150 bits (379), Expect = 1.590e-38 Identity = 69/127 (54.33%), Postives = 85/127 (66.93%), Query Frame = 1
Query: 1 CNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAF-------VSKFERRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGGRKRRAVESP 360
CNCK S+CLKLYCECF +YC+GCNCV C N ++ E +RQ A++ ++RNP AF V++ G HN GCNCKKS CLKKYCECFQAG+ C NCKC +CKNY+G+ R A SP
Sbjct: 40 CNCKNSRCLKLYCECFASGRYCDGCNCVGCCNNQQNEGVRQSAVEAILDRNPNAFRPKIAGDVTEEGASLGAARHNKGCNCKKSGCLKKYCECFQAGIFCSENCKCCDCKNYDGS---EARAAAISP 163
BLAST of mRNA_Ecto-sp9_F_contig1011.146.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AJR0_9EUKA) HSP 1 Score: 144 bits (364), Expect = 1.880e-38 Identity = 70/127 (55.12%), Postives = 80/127 (62.99%), Query Frame = 1
Query: 1 CNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAFVSKFERRAGK-RSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYE---GAAGGRKRRAVESPAAA 369
CNCK S+CLKLYCECF QYC CNC C N +D R+ AI+ T+ERNPQAF K R H GC+C+KS+CLKKYCECFQ G+ C CKC CKNYE G+A R SPAAA
Sbjct: 7 CNCKNSRCLKLYCECFASGQYCLACNCQSCHNNPENDDKRKRAIKSTLERNPQAFRPKINHAGDTLRRHTRGCHCRKSSCLKKYCECFQGGIKCTAMCKCAGCKNYEDLDGSAPARNEAPSTSPAAA 133
BLAST of mRNA_Ecto-sp9_F_contig1011.146.1 vs.
Match: Tesmin (TSO1-like CXC 5 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VRN3_9CHLO) HSP 1 Score: 154 bits (389), Expect = 2.060e-38 Identity = 71/125 (56.80%), Postives = 84/125 (67.20%), Query Frame = 1
Query: 1 CNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAFVSKFE-----RRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGGRKRRAVESP 360
CNCK S+CLKLYCECF +YC+ CNC+ C N E RQ A++ +ERNP AF K R +G HN GCNCKKS CLKKYCECFQAG+AC NCKC++CKNYEG+ R A+ SP
Sbjct: 122 CNCKNSRCLKLYCECFASGRYCDACNCLNCHNNRAHESTRQAAVEAILERNPNAFRPKIAGGSEGRHSGGARHNKGCNCKKSGCLKKYCECFQAGIACSDNCKCLDCKNYEGS---EAREALLSP 243
BLAST of mRNA_Ecto-sp9_F_contig1011.146.1 vs.
Match: CRC (domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZBA8_CHLVA) HSP 1 Score: 154 bits (390), Expect = 2.590e-38 Identity = 72/125 (57.60%), Postives = 84/125 (67.20%), Query Frame = 1
Query: 1 CNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAFVSKF-----ERRAGKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGGRKRRAVESP 360
CNCK S+CLKLYCECF +YC+GCNC+ C N E RQ A++ +ERNP AF K RRAG HN GCNCKKS CLKKYCECFQAG+ C CKC++CKNYEG+ R A+ SP
Sbjct: 156 CNCKNSRCLKLYCECFASGRYCDGCNCLNCYNNREHEATRQSAVEAILERNPNAFRPKIAPGADNRRAGGARHNKGCNCKKSGCLKKYCECFQAGIVCSEICKCLDCKNYEGS---EARDALVSP 277
BLAST of mRNA_Ecto-sp9_F_contig1011.146.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SM18_9STRA) HSP 1 Score: 142 bits (359), Expect = 1.130e-37 Identity = 65/117 (55.56%), Postives = 83/117 (70.94%), Query Frame = 1
Query: 1 CNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAFVSKFERRA-GKRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGGRKRRA 348
CNCK SKCLKLYC+CF YCNGCNC +C N E RQ A Q T+E+NP AF +K ++ G H++GC+CKKS CLKKYCECF+A V CG CKC++C+NY G+ ++R+A
Sbjct: 27 CNCKNSKCLKLYCDCFASSIYCNGCNCKDCHNNPEHEAERQDARQSTLEKNPNAFQAKIKKGGQGGSEHSSGCHCKKSKCLKKYCECFEALVFCGEKCKCLDCENYAGSIALQERKA 143 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1011.146.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1011.146.1 >prot_Ecto-sp9_F_contig1011.146.1 ID=prot_Ecto-sp9_F_contig1011.146.1|Name=mRNA_Ecto-sp9_F_contig1011.146.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=345bp CNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERback to top mRNA from alignment at Ecto-sp9_F_contig1011:4920..6128- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1011.146.1 ID=mRNA_Ecto-sp9_F_contig1011.146.1|Name=mRNA_Ecto-sp9_F_contig1011.146.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1209bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1011:4920..6128- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1011:4920..6128- >mRNA_Ecto-sp9_F_contig1011.146.1 ID=mRNA_Ecto-sp9_F_contig1011.146.1|Name=mRNA_Ecto-sp9_F_contig1011.146.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2070bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1011:4920..6128- (Ectocarpus species9 EcSCA_722f female)back to top |