mRNA_Ecto-sp9_F_contig1011.144.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1011.144.1
Unique NamemRNA_Ecto-sp9_F_contig1011.144.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1011.144.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1011contigEcto-sp9_F_contig1011:3316..3804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size491
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928205.133658-CDS-Ecto-sp9_F_contig1011:3315..36601622928205.133658-CDS-Ecto-sp9_F_contig1011:3315..3660Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1011 3316..3660 +
1692277794.1759825-CDS-Ecto-sp9_F_contig1011:3315..36601692277794.1759825-CDS-Ecto-sp9_F_contig1011:3315..3660Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1011 3316..3660 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928205.1518943-UTR-Ecto-sp9_F_contig1011:3660..38041622928205.1518943-UTR-Ecto-sp9_F_contig1011:3660..3804Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1011 3661..3804 +
1692277794.1834779-UTR-Ecto-sp9_F_contig1011:3660..38041692277794.1834779-UTR-Ecto-sp9_F_contig1011:3660..3804Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1011 3661..3804 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1011.144.1prot_Ecto-sp9_F_contig1011.144.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1011 3316..3660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1011.144.1

>prot_Ecto-sp9_F_contig1011.144.1 ID=prot_Ecto-sp9_F_contig1011.144.1|Name=mRNA_Ecto-sp9_F_contig1011.144.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=115bp
PLPAPYGRGSRPTAVFAITKNTSPHPDKKHNKTFFRPFHYKSSSAYAGSC
VKGWDPSAIFLVRVGVGGRQAPPSPQANAAPQNSEEYRLLRHRSTRWEKA
RRLCIHPQASGPQQ*
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mRNA from alignment at Ecto-sp9_F_contig1011:3316..3804+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1011.144.1 ID=mRNA_Ecto-sp9_F_contig1011.144.1|Name=mRNA_Ecto-sp9_F_contig1011.144.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=489bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1011:3316..3804+ (Ectocarpus species9 EcSCA_722f female)
CCGCTCCCCGCCCCCTACGGAAGAGGATCAAGACCCACCGCCGTCTTCGC
CATCACAAAAAACACTTCACCTCACCCAGATAAAAAACACAACAAGACTT
TTTTCCGTCCGTTCCACTACAAATCATCATCCGCATACGCGGGGTCATGT
GTGAAAGGTTGGGACCCTAGTGCGATATTTCTTGTACGAGTAGGAGTAGG
GGGCAGGCAGGCACCACCATCGCCACAAGCGAATGCTGCGCCGCAAAACT
CCGAAGAATACAGACTGCTGCGACATCGCTCTACCCGCTGGGAAAAGGCG
CGCCGGCTATGTATCCACCCCCAAGCGTCCGGGCCGCAGCAGTAGCCGCA
GCCCCTTTCGGCAGCAGCCTGACCCCCTATTCCGTGCGCTACGCCCTAGG
CCCTGCGACTATGTACCCTCCTTGCTCTTACAACCGCGCCTGTGATTACG
GACCGCCCCCCCAAATCTCTCTTTTAATCTCCTCGGCGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1011:3316..3804+

>mRNA_Ecto-sp9_F_contig1011.144.1 ID=mRNA_Ecto-sp9_F_contig1011.144.1|Name=mRNA_Ecto-sp9_F_contig1011.144.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1011:3316..3804+ (Ectocarpus species9 EcSCA_722f female)
CCGCTCCCCGCCCCCTACGGAAGAGGATCAAGACCCACCGCCGTCTTCGC
CATCACAAAAAACACTTCACCTCACCCAGATAAAAAACACAACAAGACTT
TTTTCCGTCCGTTCCACTACAAATCATCATCCGCATACGCGGGGTCATGT
GTGAAAGGTTGGGACCCTAGTGCGATATTTCTTGTACGAGTAGGAGTAGG
GGGCAGGCAGGCACCACCATCGCCACAAGCGAATGCTGCGCCGCAAAACT
CCGAAGAATACAGACTGCTGCGACATCGCTCTACCCGCTGGGAAAAGGCG
CGCCGGCTATGTATCCACCCCCAAGCGTCCGGGCCGCAGCAGTAGCCGCT
CCCCGCCCCCTACGGAAGAGGATCAAGACCCACCGCCGTCTTCGCCATCA
CAAAAAACACTTCACCTCACCCAGATAAAAAACACAACAAGACTTTTTTC
CGTCCGTTCCACTACAAATCATCATCCGCATACGCGGGGTCATGTGTGAA
AGGTTGGGACCCTAGTGCGATATTTCTTGTACGAGTAGGAGTAGGGGGCA
GGCAGGCACCACCATCGCCACAAGCGAATGCTGCGCCGCAAAACTCCGAA
GAATACAGACTGCTGCGACATCGCTCTACCCGCTGGGAAAAGGCGCGCCG
GCTATGTATCCACCCCCAAGCGTCCGGGCCGCAGCAGTAG
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