mRNA_Ecto-sp9_F_contig10104.142.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10104.142.1
Unique NamemRNA_Ecto-sp9_F_contig10104.142.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10104.142.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10104contigEcto-sp9_F_contig10104:3311..3999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-03_004660.1
Exons3
Model size385
Cds size156
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10104.142.1prot_Ecto-sp9_F_contig10104.142.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10104 3311..3658 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928202.2193234-CDS-Ecto-sp9_F_contig10104:3310..34611622928202.2193234-CDS-Ecto-sp9_F_contig10104:3310..3461Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10104 3311..3461 -
1692277794.1057336-CDS-Ecto-sp9_F_contig10104:3310..34611692277794.1057336-CDS-Ecto-sp9_F_contig10104:3310..3461Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10104 3311..3461 -
1622928202.229112-CDS-Ecto-sp9_F_contig10104:3653..36581622928202.229112-CDS-Ecto-sp9_F_contig10104:3653..3658Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10104 3654..3658 -
1692277794.1131349-CDS-Ecto-sp9_F_contig10104:3653..36581692277794.1131349-CDS-Ecto-sp9_F_contig10104:3653..3658Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10104 3654..3658 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928202.2416008-UTR-Ecto-sp9_F_contig10104:3658..37171622928202.2416008-UTR-Ecto-sp9_F_contig10104:3658..3717Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10104 3659..3717 -
1692277794.1235256-UTR-Ecto-sp9_F_contig10104:3658..37171692277794.1235256-UTR-Ecto-sp9_F_contig10104:3658..3717Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10104 3659..3717 -
1622928202.2569673-UTR-Ecto-sp9_F_contig10104:3829..39991622928202.2569673-UTR-Ecto-sp9_F_contig10104:3829..3999Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10104 3830..3999 -
1692277794.1310318-UTR-Ecto-sp9_F_contig10104:3829..39991692277794.1310318-UTR-Ecto-sp9_F_contig10104:3829..3999Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10104 3830..3999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10104.142.1

>prot_Ecto-sp9_F_contig10104.142.1 ID=prot_Ecto-sp9_F_contig10104.142.1|Name=mRNA_Ecto-sp9_F_contig10104.142.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=52bp
MRLYNRDIPNVSSAGNRSTSRGTYVRERSIRCGKRLFSEHTHPNTTLKYR
M*
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mRNA from alignment at Ecto-sp9_F_contig10104:3311..3999-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10104.142.1 ID=mRNA_Ecto-sp9_F_contig10104.142.1|Name=mRNA_Ecto-sp9_F_contig10104.142.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=689bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10104:3311..3999- (Ectocarpus species9 EcSCA_722f female)
ATGCTATCGCTAATCAAGAAGCACAGGGAGCCTACAGCGGTGAGCAACTG
TCGTTCCTAATGGTTTGTGGGAGGTTTGTCCATGTGTGGAGTTACGGGGT
CGAGCGAACACTACCTGGGCTTCCGGGTTGACTGCTTCAAGAGCAGATTG
CGGTTCCCCAACGCTCGAAGGTGAGGTTGGGCCATCGGTCCCCCCGGTGT
GCTTTGCATACCCCCCCTCCCGCTGCTGCGTGCTGTGTGTAAGTCCACCA
CCACCGAATCCTCCTACTGCTTTATCGATGAGGTCCCGTGGTTCGTTTTG
CCGTTGGGGGCGTGGAAATTACATCGATCGAAGCTCCACCGATGAGGTAA
ACTCATTTACTCCACAGGTGGAGTAATAACATATCCACTTTCTACCGGGG
TAATTAGACTAGTCTACATACATTACATGTTGTGCCAAACGTGAATGTAT
GCATACCGAAACGGTAACTGTCGACCACCGGTAGCGGTTGTCAGCCCCTG
CTGTCAGCCCCTGCTGTTTCCTCTTTTTCGTCGAATAGGCTGTACAACAG
AGACATACCCAACGTTTCTTCCGCCGGAAATAGGTCGACCTCCCGTGGCA
CGTACGTACGCGAGCGATCGATCCGGTGTGGCAAGCGACTTTTCTCAGAA
CACACCCACCCAAACACTACGCTGAAGTACCGCATGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10104:3311..3999-

>mRNA_Ecto-sp9_F_contig10104.142.1 ID=mRNA_Ecto-sp9_F_contig10104.142.1|Name=mRNA_Ecto-sp9_F_contig10104.142.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10104:3311..3999- (Ectocarpus species9 EcSCA_722f female)
ATGAGATGAGGCTGTACAACAGAGACATACCCAACGTTTCTTCCGCCGGA
AATAGGTCGACCTCCCGTGGCACGTACGTACGCGAGCGATCGATCCGGTG
TGGCAAGCGACTTTTCTCAGAACACACCCACCCAAACACTACGCTGAAGT
ACCGCATGTGAGCTGTACAACAGAGACATACCCAACGTTTCTTCCGCCGG
AAATAGGTCGACCTCCCGTGGCACGTACGTACGCGAGCGATCGATCCGGT
GTGGCAAGCGACTTTTCTCAGAACACACCCACCCAAACACTACGCTGAAG
TACCGCATGTGA
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