mRNA_Ecto-sp9_F_contig101.134.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig101.134.1
Unique NamemRNA_Ecto-sp9_F_contig101.134.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig101.134.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF4_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 2.370e-40
Identity = 76/94 (80.85%), Postives = 80/94 (85.11%), Query Frame = -1 
Query:    1 RDLAASVSGPSSVHDHQFPAPRAAVGSHTSEENLAHARGDVLCTTQELTSAAAAAAAHASDHDTAAGRGFAVRRHSGEPVLPEGGQRGFDVDHH 282
            RDLAAS+ GPSSVHD QFPAP AA G HT EE+LAHARGDVL TT+EL SA AAA   ASDHD A+GRGFAVRRHSGEPVLPEGGQRGFD DHH
Sbjct:   58 RDLAASLFGPSSVHDPQFPAPPAAAGGHTREEDLAHARGDVLGTTEELKSAPAAA--RASDHDAASGRGFAVRRHSGEPVLPEGGQRGFDEDHH 149
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig101.134.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.370e-4080.85protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig101contigEcto-sp9_F_contig101:57696..58172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size479
Cds size477
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928201.6160498-CDS-Ecto-sp9_F_contig101:57695..581721622928201.6160498-CDS-Ecto-sp9_F_contig101:57695..58172Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig101 57696..58172 +
1692277793.789256-CDS-Ecto-sp9_F_contig101:57695..581721692277793.789256-CDS-Ecto-sp9_F_contig101:57695..58172Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig101 57696..58172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig101.134.1prot_Ecto-sp9_F_contig101.134.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig101 57696..58172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig101.134.1

>prot_Ecto-sp9_F_contig101.134.1 ID=prot_Ecto-sp9_F_contig101.134.1|Name=mRNA_Ecto-sp9_F_contig101.134.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=159bp
MMIYVEAPLPPFRQDGLAAMPAHGEAPSGGGVMVRGVGGGGGGGARQLLS
GAEDVPTGVSEVLLTCVAADGRARRRELVVVDARWPGDRRRQVTSAAICA
FSSVVRKAERSSAGGPAFMEANRPKTALRSPVASSTAVSWRRWSVESCPS
MLAPATAWW
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mRNA from alignment at Ecto-sp9_F_contig101:57696..58172+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig101.134.1 ID=mRNA_Ecto-sp9_F_contig101.134.1|Name=mRNA_Ecto-sp9_F_contig101.134.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=477bp|location=Sequence derived from alignment at Ecto-sp9_F_contig101:57696..58172+ (Ectocarpus species9 EcSCA_722f female)
ATGATGATCTACGTCGAAGCCCCGTTGCCCCCCTTCCGGCAAGACGGGCT
CGCCGCTATGCCGGCGCACGGCGAAGCCCCTTCCGGCGGCGGTGTCATGG
TCAGAGGCGTGGGCGGCGGCGGCGGCGGCGGCGCTCGTCAACTCCTGAGT
GGTGCAGAGGACGTCCCCACGGGCGTGAGCGAGGTTCTCCTCACTTGTGT
GGCTGCCGACGGCCGCGCGAGGCGCCGGGAACTGGTGGTCGTGGACGCTC
GATGGCCCGGAGACCGACGCCGCCAAGTCACGTCGGCCGCAATCTGCGCG
TTTTCTTCAGTAGTGCGGAAGGCCGAGCGCTCGTCCGCCGGAGGGCCCGC
GTTCATGGAAGCGAACAGGCCGAAGACGGCGTTGAGGTCACCCGTGGCGT
CGAGCACGGCGGTCAGTTGGCGCCGCTGGTCCGTGGAAAGCTGCCCAAGC
ATGCTGGCGCCGGCGACGGCGTGGTGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig101:57696..58172+

>mRNA_Ecto-sp9_F_contig101.134.1 ID=mRNA_Ecto-sp9_F_contig101.134.1|Name=mRNA_Ecto-sp9_F_contig101.134.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=954bp|location=Sequence derived from alignment at Ecto-sp9_F_contig101:57696..58172+ (Ectocarpus species9 EcSCA_722f female)
ATGATGATCTACGTCGAAGCCCCGTTGCCCCCCTTCCGGCAAGACGGGCT
CGCCGCTATGCCGGCGCACGGCGAAGCCCCTTCCGGCGGCGGTGTCATGG
TCAGAGGCGTGGGCGGCGGCGGCGGCGGCGGCGCTCGTCAACTCCTGAGT
GGTGCAGAGGACGTCCCCACGGGCGTGAGCGAGGTTCTCCTCACTTGTGT
GGCTGCCGACGGCCGCGCGAGGCGCCGGGAACTGGTGGTCGTGGACGCTC
GATGGCCCGGAGACCGACGCCGCCAAGTCACGTCGGCCGCAATCTGCGCG
TTTTCTTCAGTAGTGCGGAAGGCCGAGCGCTCGTCCGCCGGAGGGCCCGC
GTTCATGGAAGCGAACAGGCCGAAGACGGCGTTGAGGTCACCCGTGGCGT
CGAGCACGGCGGTCAGTTGGCGCCGCTGGTCCGTGGAAAGCTGCCCAAGC
ATGCTGGCGCCGGCGACGGCGTGGTGGATGATGATCTACGTCGAAGCCCC
GTTGCCCCCCTTCCGGCAAGACGGGCTCGCCGCTATGCCGGCGCACGGCG
AAGCCCCTTCCGGCGGCGGTGTCATGGTCAGAGGCGTGGGCGGCGGCGGC
GGCGGCGGCGCTCGTCAACTCCTGAGTGGTGCAGAGGACGTCCCCACGGG
CGTGAGCGAGGTTCTCCTCACTTGTGTGGCTGCCGACGGCCGCGCGAGGC
GCCGGGAACTGGTGGTCGTGGACGCTCGATGGCCCGGAGACCGACGCCGC
CAAGTCACGTCGGCCGCAATCTGCGCGTTTTCTTCAGTAGTGCGGAAGGC
CGAGCGCTCGTCCGCCGGAGGGCCCGCGTTCATGGAAGCGAACAGGCCGA
AGACGGCGTTGAGGTCACCCGTGGCGTCGAGCACGGCGGTCAGTTGGCGC
CGCTGGTCCGTGGAAAGCTGCCCAAGCATGCTGGCGCCGGCGACGGCGTG
GTGG
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