mRNA_Ecto-sp9_F_contig101.132.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig101.132.1
Unique NamemRNA_Ecto-sp9_F_contig101.132.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig101.132.1 vs.
Match: Protein (kish n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6V7_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 2.070e-42
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:    1 QSALFSMPDLLTVILLLICVCTYVRGYRKGIFDVEDGSHSGLRGLCWKAARVGERLSPYVSAALLVMAGRVLMDS 225
             SALFSMPDLLTVILLLICVCTYVRGYRKGIFDVEDGSHSGLRGLCWKAARVGERLSPYVSAALLVMAGRVLMDS
Sbjct:    1 MSALFSMPDLLTVILLLICVCTYVRGYRKGIFDVEDGSHSGLRGLCWKAARVGERLSPYVSAALLVMAGRVLMDS 75
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BLAST of mRNA_Ecto-sp9_F_contig101.132.1 vs.
Match: Protein (kish n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW34_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.340e-20
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:    1 QSALFSMPDLLTVILLLICVCTYVRGYRKGIFD--VEDGSHSGLRGLCWKAARVGERLSPYVSAALLVMAGRVL 216
             SA+F    L+TV+LLLIC CTY+RG+R GIFD   E   H+G +GLCWK +R+GER+SPYVS + L+MA  +L
Sbjct:    1 MSAIFDFSSLITVLLLLICTCTYLRGFRSGIFDNSAEPHRHTGFKGLCWKFSRIGERISPYVSVSCLLMAVHIL 74
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BLAST of mRNA_Ecto-sp9_F_contig101.132.1 vs.
Match: Protein (kish n=2 Tax=Albugo TaxID=65356 RepID=F0WK68_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.720e-18
Identity = 41/70 (58.57%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:    1 QSALFSMPDLLTVILLLICVCTYVRGYRKGIFD--VEDGSHSGLRGLCWKAARVGERLSPYVSAALLVMA 204
             SALFS+P L+TVILL IC C+Y+R     +FD   + G H GL GLCWKA+R+GER SPYV+ AL++MA
Sbjct:    1 MSALFSLPGLITVILLFICTCSYIRAKFPTVFDRNQQPGKHEGLSGLCWKASRIGERKSPYVAGALILMA 70
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BLAST of mRNA_Ecto-sp9_F_contig101.132.1 vs.
Match: Protein (kish n=4 Tax=Pythiaceae TaxID=4782 RepID=K3X7N3_GLOUD)

HSP 1 Score: 86.7 bits (213), Expect = 6.470e-18
Identity = 44/77 (57.14%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:    1 QSALFSMPDLLTVILLLICVCTYVRGYRKGIFD--VEDGSHSGLRGLCWKAARVGERLSPYVSAALLVMAGRVLMDS 225
             SALFS+  L+TVILL IC CTY+R     IFD   + G H GL GLCWKA+R+GER SPYV+  L+VMA   L+ S
Sbjct:    1 MSALFSLQGLITVILLFICTCTYIRMKFPTIFDRGQQPGKHEGLSGLCWKASRIGERKSPYVAGVLVVMAFHTLLFS 77
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BLAST of mRNA_Ecto-sp9_F_contig101.132.1 vs.
Match: Protein (kish n=18 Tax=Peronosporaceae TaxID=4777 RepID=D0NVB3_PHYIT)

HSP 1 Score: 81.6 bits (200), Expect = 4.710e-16
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:    1 QSALFSMPDLLTVILLLICVCTYVRGYRKGIFDVED--GSHSGLRGLCWKAARVGERLSPYVSAALLVMAGRVLMDS 225
             SALFS+  LLTVILL IC CTY++     +FD     G H GL GLCWKA+R+GER S YV++AL+VMA   L  S
Sbjct:    1 MSALFSLQGLLTVILLFICTCTYIKMKFPTLFDRGQLPGKHEGLGGLCWKASRIGERKSQYVASALVVMAVHTLFFS 77
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BLAST of mRNA_Ecto-sp9_F_contig101.132.1 vs.
Match: Protein (kish n=3 Tax=Peronosporaceae TaxID=4777 RepID=H3G7D7_PHYRM)

HSP 1 Score: 80.9 bits (198), Expect = 8.860e-16
Identity = 43/76 (56.58%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:    4 SALFSMPDLLTVILLLICVCTYVRGYRKGIFDVED--GSHSGLRGLCWKAARVGERLSPYVSAALLVMAGRVLMDS 225
            SALFS+  LLTVILL IC CTY++     +FD     G H GL GLCWKA+R+GER S YV+ AL+VMA   L  S
Sbjct:    1 SALFSLQGLLTVILLFICTCTYIKMKFPTLFDRGQLPGKHEGLGGLCWKASRIGERKSQYVAGALVVMAMHTLFFS 76
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BLAST of mRNA_Ecto-sp9_F_contig101.132.1 vs.
Match: Protein (kish n=2 Tax=Phytophthora TaxID=4783 RepID=A0A8J5IYH4_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.100e-15
Identity = 43/77 (55.84%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:    1 QSALFSMPDLLTVILLLICVCTYVRGYRKGIFDVED--GSHSGLRGLCWKAARVGERLSPYVSAALLVMAGRVLMDS 225
             SALFS+  LLTVILL IC CTY++     +FD     G H GL GLCWKA+R+GER S YV+ AL+VMA   L  S
Sbjct:   20 SSALFSLQGLLTVILLFICTCTYIKMKFPTLFDRGQLPGKHEGLGGLCWKASRIGERKSQYVAGALVVMAVHTLFFS 96
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BLAST of mRNA_Ecto-sp9_F_contig101.132.1 vs.
Match: Protein (kish n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3L9_AURAN)

HSP 1 Score: 80.1 bits (196), Expect = 2.230e-15
Identity = 39/85 (45.88%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:    1 QSALFSMPDLLTVILLLICVCTYVRGYRKGIFD------------VEDGSHSGLRGLCWKAARVGERLSPYVSAALLVMAGRVLM 219
             SA+F    L+TV+LL+IC CTYVR  R  +FD            +     SG+RG CWKA+R+GERLSPYVS  +  MA  +L+
Sbjct:    1 MSAIFDFSSLVTVLLLIICTCTYVRAMRPSVFDGGLSADDLASPHLSYKRRSGIRGACWKASRIGERLSPYVSVVVAAMAFHILL 85
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BLAST of mRNA_Ecto-sp9_F_contig101.132.1 vs.
Match: Protein (kish n=1 Tax=Auriculariopsis ampla TaxID=97359 RepID=A0A550C1V1_9AGAR)

HSP 1 Score: 77.0 bits (188), Expect = 2.050e-14
Identity = 40/74 (54.05%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 QSALFSMPDLLTVILLLICVCTYVRGYRKGIFDVEDGSHSGLRGLCWKAARVGERLSPYVSAALLVMAGRVLMD 222
             SALF+  DLL VILL+IC CTYVRG    I D       G  GL W +AR+GERLSPYV+ A + MA ++LM+
Sbjct:    1 MSALFNFQDLLLVILLVICTCTYVRGIMPRIIDRNK---EGFLGLFWMSARIGERLSPYVAIACVAMAVKILME 71
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BLAST of mRNA_Ecto-sp9_F_contig101.132.1 vs.
Match: Protein (kish n=1 Tax=Naganishia liquefaciens TaxID=104408 RepID=A0A8H3TSN4_9TREE)

HSP 1 Score: 76.3 bits (186), Expect = 3.940e-14
Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:    1 QSALFSMPDLLTVILLLICVCTYVRGYRKGIFDVEDGSHSGLRGLCWKAARVGERLSPYVSAALLVMAGRVLM 219
             SALF+   LL V+LLLIC CTYVRG    I D       G  GL WK AR+GERLSPYVS A + MA  +LM
Sbjct:    1 MSALFNFQSLLLVLLLLICTCTYVRGTMPSIVDRNK---EGFLGLFWKCARIGERLSPYVSLACVAMAVSILM 70
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig101.132.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Protein2.070e-4298.67kish n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6V7_EC... [more]
Protein2.340e-2056.76kish n=1 Tax=Tribonema minus TaxID=303371 RepID=A0... [more]
Protein1.720e-1858.57kish n=2 Tax=Albugo TaxID=65356 RepID=F0WK68_9STRA[more]
Protein6.470e-1857.14kish n=4 Tax=Pythiaceae TaxID=4782 RepID=K3X7N3_GL... [more]
Protein4.710e-1655.84kish n=18 Tax=Peronosporaceae TaxID=4777 RepID=D0N... [more]
Protein8.860e-1656.58kish n=3 Tax=Peronosporaceae TaxID=4777 RepID=H3G7... [more]
Protein1.100e-1555.84kish n=2 Tax=Phytophthora TaxID=4783 RepID=A0A8J5I... [more]
Protein2.230e-1545.88kish n=1 Tax=Aureococcus anophagefferens TaxID=440... [more]
Protein2.050e-1454.05kish n=1 Tax=Auriculariopsis ampla TaxID=97359 Rep... [more]
Protein3.940e-1456.16kish n=1 Tax=Naganishia liquefaciens TaxID=104408 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig101contigEcto-sp9_F_contig101:25077..26985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue5.7e-32
Seed eggNOG ortholog2880.D7G6V7
EggNOG free text desc.Protein of unknown function (DUF1242)
EggNOG OGs2E2NW@1,2S9VV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionProtein of unknown function DUF1242
Ec32 orthologEc-01_012070.1
Exons2
Model size980
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig101.132.1prot_Ecto-sp9_F_contig101.132.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig101 25829..26967 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928201.4178753-UTR-Ecto-sp9_F_contig101:25076..258281622928201.4178753-UTR-Ecto-sp9_F_contig101:25076..25828Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig101 25077..25828 -
1692277793.6003819-UTR-Ecto-sp9_F_contig101:25076..258281692277793.6003819-UTR-Ecto-sp9_F_contig101:25076..25828Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig101 25077..25828 -
1622928201.4502635-UTR-Ecto-sp9_F_contig101:26967..269851622928201.4502635-UTR-Ecto-sp9_F_contig101:26967..26985Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig101 26968..26985 -
1692277793.6278534-UTR-Ecto-sp9_F_contig101:26967..269851692277793.6278534-UTR-Ecto-sp9_F_contig101:26967..26985Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig101 26968..26985 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928201.428665-CDS-Ecto-sp9_F_contig101:25828..259261622928201.428665-CDS-Ecto-sp9_F_contig101:25828..25926Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig101 25829..25926 -
1692277793.6116781-CDS-Ecto-sp9_F_contig101:25828..259261692277793.6116781-CDS-Ecto-sp9_F_contig101:25828..25926Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig101 25829..25926 -
1622928201.4391358-CDS-Ecto-sp9_F_contig101:26855..269671622928201.4391358-CDS-Ecto-sp9_F_contig101:26855..26967Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig101 26856..26967 -
1692277793.6198378-CDS-Ecto-sp9_F_contig101:26855..269671692277793.6198378-CDS-Ecto-sp9_F_contig101:26855..26967Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig101 26856..26967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig101.132.1

>prot_Ecto-sp9_F_contig101.132.1 ID=prot_Ecto-sp9_F_contig101.132.1|Name=mRNA_Ecto-sp9_F_contig101.132.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=70bp
MPDLLTVILLLICVCTYVRGYRKGIFDVEDGSHSGLRGLCWKAARVGERL
SPYVSAALLVMAGRVLMDS*
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mRNA from alignment at Ecto-sp9_F_contig101:25077..26985-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig101.132.1 ID=mRNA_Ecto-sp9_F_contig101.132.1|Name=mRNA_Ecto-sp9_F_contig101.132.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1909bp|location=Sequence derived from alignment at Ecto-sp9_F_contig101:25077..26985- (Ectocarpus species9 EcSCA_722f female)
CAGTCGGCGCTCTTTAGCATGCCCGACCTCCTGACGGTCATTTTGCTGTT
GATATGCGTCTGCACGTACGTCAGGGGGTACCGAAAGGGAATATTTGATG
TCGAGGATGGTTCACACAGTGGCCTGCGAGGTGAGATGCTATTATACAAC
ACCAGTGTCCCCTTCCATGCGCACGACTAGCGTTATGTTGGACCAAAGCC
AATTCTCGCAGGCAACACACGGTGTGCTACACTGCTGCACAGTTCAGTGT
TGGCTTCCCCAGTACCATGCCTCCGGGACGTTGTGTTTCCGTTTTTGGTC
AGCAATAGCAATCCGCTGCAAGCGCCTGCTGCTGGTCAGGGCTGACACAG
GAGTTGGCCGTAAGAGGGCCTCTTTGTGCTCTGCCAAGAGGTTGTCAAAT
GCTTCATTCTTCCAGTCGTGGTCTTACCATCTTGATGCAGAAAATACGCT
GTGTATTTCATTTGTGCCAGACAAATGTTTGGCCACTGCTCTCGGGAACG
CACGACGTAACACATGCGTTCACGTGACATGCCACGACCTGGATCGGCCA
ACCCCTTGCCCTTCCCCATCAATTGTACCATATGTGGTGTACCGCTGCGT
TTTCTATTGCGGGGTTGATCTGATGGGACACGCGGGTGGTATTGAATGAG
GCGTCAAGAATCATGTCATGAAGTAGGTTCGTGTGGTTACTTGGGGCACC
GCCGCCGTATCGGTTGTTGGTATGAATACAGTACAGCACCACACGGCACG
ATGCTGGGGAACTAGCCGTGGCTTGTGCAGGAATTTTCCCAGCAGTGTCC
AGAAGTAGGTTCAGCATTTTACACGTGCCCAGCGAGACTAGAATTTCATG
CTTTGAAACAACCAACCTTACTATTAACACCGTCCGTTGATATGTCTCAC
GCTTCCATGAAACGGCTCTACAATAGGAGCTACGGCGAGGGGTGAAGCAC
AGTACTTAACGATATATTATGACTGTATTTGCGCGGTAAAGGTTTGCACC
GTAGGTTTGACCCTCTTTGGTTGTGCCGGTCGTCCTCCTTCTTGCTATGG
CGACCGCAGGGTTGTGCTGGAAAGCGGCCCGGGTGGGAGAGCGATTAAGC
CCTTATGTCAGCGCGGCGCTGCTGGTCATGGCCGGACGTGTCCTCATGGA
CAGCTGATGCTGCAACTCGACCGCAGCTGAAGAGAGAGGCTCGCTCGTCG
AGCAAGAAGATGTGTCGTCTGTTGTGTATGTGTCAGGCTCCAACAGCGCA
ATAAAATAGGACCGTTGTAAGTTTGATGTAAAGGTTTCCAGTGGCGCGAC
TTGTACCCGCGAGGCAGAGCGTGTGCAGCAGCAGAGCAGCTGTTAACGAG
GAGGAGGGCGAGAGAACAAGGAAACAAGCTGTGTGTGTGTGTCAAGTGCC
GAGTGTCGAGTGGTATCGAATAACTTGACGGCGGTCGCGTGGCTGTGCTT
TCATCACGGGGCTCTCCCGAAGAAATCGGGCAAGCAGCTCTTGCGTTGTC
TCTCTTTCGATATTGAATGCCGGGGATGGGCCATTTTCGTGTTGATTGCG
AGCTAGCTCCTCAAAGCGCTCGGGAGTAGAATCATTTATCCTTGACTCAA
GTTGCCAGACGCTCGTCTATCGGCGGACAGAGAGTTTTTTTTTTTGTAGT
CAAGACAAGTCAAGAAGTTTGTGCATGCTTTTGCGTCCTTCGGGATAGAT
TGCCACAACATTGTTGCCAACTATCGTTATTCCCCGACTATAATCGGTCG
AGGTGGAGAGGTTCCCCATACCCCGCTCGACCTTGGGCAAAGGGACGGCG
TTTGGGGTCGAGGTTTAGGCCGAAGGAAGGAAGGAAGGAAGGAAACCAAC
GCGGCATGCTTCCGCTGTCACTACAACAGCAGGGATGCACGAACGTGACG
GTGAAGGCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig101:25077..26985-

>mRNA_Ecto-sp9_F_contig101.132.1 ID=mRNA_Ecto-sp9_F_contig101.132.1|Name=mRNA_Ecto-sp9_F_contig101.132.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp9_F_contig101:25077..26985- (Ectocarpus species9 EcSCA_722f female)
ATGCCCGACCTCCTGACGGTCATTTTGCTGTTGATATGCGTCTGCACGTA
CGTCAGGGGGTACCGAAAGGGAATATTTGATGTCGAGGATGGTTCACACA
GTGGCCTGCGAGATGCCCGACCTCCTGACGGTCATTTTGCTGTTGATATG
CGTCTGCACGTACGTCAGGGGGTACCGAAAGGGAATATTTGATGTCGAGG
ATGGTTCACACAGTGGCCTGCGAGGGTTGTGCTGGAAAGCGGCCCGGGTG
GGAGAGCGATTAAGCCCTTATGTCAGCGCGGCGCTGCTGGTCATGGCCGG
ACGTGTCCTCATGGACAGCTGAGGTTGTGCTGGAAAGCGGCCCGGGTGGG
AGAGCGATTAAGCCCTTATGTCAGCGCGGCGCTGCTGGTCATGGCCGGAC
GTGTCCTCATGGACAGCTGA
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