mRNA_Ecto-sp9_F_contig10099.128.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10099.128.1
Unique NamemRNA_Ecto-sp9_F_contig10099.128.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10099.128.1 vs.
Match: N-acetyltransferase (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD73_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 5.640e-53
Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:    1 RRKGLAKRLVKHCEDACREWGYDEVLLLVEENNKRARRLYSKLGYKMLFRDTKAKKILPDSYQIRDVPCVNVCMRRDLNANIFSNLFAMIRQ 276
            RRKGLAKRLVK CED CREWGYDEVLLLVEENNKRARRLYSKLGYKMLFRDTKAKKILPDSYQIRDVPCVNVCMRRDLNANIFSNLFAMIRQ
Sbjct:  223 RRKGLAKRLVKQCEDVCREWGYDEVLLLVEENNKRARRLYSKLGYKMLFRDTKAKKILPDSYQIRDVPCVNVCMRRDLNANIFSNLFAMIRQ 314
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10099.128.1 vs.
Match: Acyl-CoA (N-acyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB41_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 8.130e-17
Identity = 45/88 (51.14%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:    1 RRKGLAKRLVKHCEDACREWGYDEVLLLVEENNKRARRLYSKLGYKMLFRDTKAKKILPDSYQIRDVPCVNVCMRRDLNANIFSNLFA 264
            RRKG+ ++LV+ CE   + WGY E+LLLV E N  ARRLYSKLGYK LF +T    +   S+QIR+ PC  VCMR  L      + FA
Sbjct:  194 RRKGIGQKLVRACEAKVKSWGYAELLLLVNETNSPARRLYSKLGYKDLFTNTSGTTVEVTSFQIRNSPCTTVCMRAGLAPRGLFSFFA 281
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10099.128.1 vs.
Match: Hypothetical (protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RU52_9CHLO)

HSP 1 Score: 78.6 bits (192), Expect = 2.870e-13
Identity = 35/86 (40.70%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:    1 RRKGLAKRLVKHCEDACREWGYDEVLLLVEENNKRARRLYSKLGYKMLFRDTKAKKILPDSYQIRDVPCVNVCMRRDLNANIFSNL 258
            RR+GLA +L++ CE+ C+EWGY+E+LL VE  N +AR+LYSKLGY+ +F   ++  +     +++D+    +CMR+ L   +   L
Sbjct:  208 RRRGLAVQLMRECEEQCKEWGYEEILLFVEATNPKARKLYSKLGYRRIFTKKESVAVKIVDGKLKDMSVDLICMRKSLKGGLLGLL 293
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10099.128.1 vs.
Match: Hypothetical (protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C0T8_CHRCT)

HSP 1 Score: 73.9 bits (180), Expect = 1.580e-11
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:    1 RRKGLAKRLVKHCEDACREWGYDEVLLLVEENNKRARRLYSKLGYKMLFRDTKAKKILPDSYQIRDVPCVNVCMRRDLNANIFSNLFA 264
            RRKG+AKRL K  E A   WG DE+LL VE +N+RA++LY KLGY+ +  DT+A K       +   P  N+ MR+DL A     L A
Sbjct:  191 RRKGIAKRLCKEAEKAAISWGCDEILLKVENSNRRAQKLYRKLGYRTVAVDTRADKPQAIGGTLTFKPTTNIVMRKDLRAPPIDVLLA 278
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10099.128.1 vs.
Match: Hypothetical (protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CH37_9CHLO)

HSP 1 Score: 71.6 bits (174), Expect = 1.010e-10
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:    1 RRKGLAKRLVKHCEDACREWGYDEVLLLVEENNKRARRLYSKLGYKMLFRDTKAKKILPDSYQI-----RDVPCVNVCMRRDL 234
            RR+G+AK+L+  CE  C EWGY E+ LLVE++N +ARRLY KLGYK      + ++   DSY++     R V   NV MR+ L
Sbjct:  190 RRRGIAKKLMSRCERVCAEWGYQEIWLLVEKDNPKARRLYRKLGYK------ERREEEDDSYKLVEGKLRQVDVTNVYMRKSL 266
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10099.128.1 vs.
Match: N-acetyltransferase (domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D5J2_EMIHU)

HSP 1 Score: 64.7 bits (156), Expect = 3.490e-10
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 RRKGLAKRLVKHCEDACREWGYDEVLLLVEENNKRARRLYSKLGYK 138
            RR+GLA+RL +  E   REWGYDEVLL VE +N+RAR+LY KLGY+
Sbjct:   13 RRRGLAQRLCREAEGLAREWGYDEVLLKVERDNRRARKLYRKLGYR 58
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10099.128.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0NCK5_9EUKA)

HSP 1 Score: 69.7 bits (169), Expect = 3.680e-10
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:    1 RRKGLAKRLVKHCEDACREWGYDEVLLLVEENNKRARRLYSKLGYKMLFRDTKAKKILPDSYQIRDVPCVNVCMRRDL 234
            RRKG+AKRL +  E + R WGY EVLL VE  NK+AR LY  LGY+++  D +A++    S  ++ V    V MR+DL
Sbjct:  141 RRKGIAKRLCRAAEQSARSWGYTEVLLKVEAENKKARNLYRSLGYRVVAIDREAERPETGSGGLKFVKTTQVAMRKDL 218
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10099.128.1 vs.
Match: Gcn5-related (n-acetyltransferase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z711_NANGC)

HSP 1 Score: 67.8 bits (164), Expect = 1.690e-9
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:    1 RRKGLAKRLVKHCEDACREWGYDEVLLLVEENNKRARRLYSKLGYKMLFRDTKAKKILPDSYQIRDVPCVNVCMRRDLNANIFSNLFAMI 270
            RR+G+ +RLV  CE+  R WGYDE++L VE++N++AR LY  +GY  L+ D   +K       I++V    V +R+ L  +   N FA +
Sbjct:  192 RRQGVGRRLVHACEEMVRTWGYDELILQVEDSNQQARNLYRDMGYIDLYTDATGRKYELSGMSIKNVRINKVTLRKALVPSAAKNPFAAL 281
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10099.128.1 vs.
Match: N-acetyltransferase (domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYN2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.660e-9
Identity = 35/90 (38.89%), Postives = 53/90 (58.89%), Query Frame = 1 
Query:    1 RRKGLAKRLVKHCEDACREWGYDEVLLLVEENNKRARRLYSKLGYKMLFRDTKAKKILPDSYQIRDVPCVNVCMRRDLNANIFSNLFAMI 270
            RR+G+ +RLV  CE+  R WGYDE++L VE++N+ AR LY  +GY  L+ D   +K       I++V    V +R+ L  +   N FA +
Sbjct:  437 RRQGVGRRLVHACEEMVRSWGYDELILQVEDSNQHARNLYRDMGYIDLYTDATGRKYELSGMSIKNVRINKVTLRKALVPSAAKNPFATL 526
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10099.128.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DA34_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.360e-9
Identity = 31/80 (38.75%), Postives = 50/80 (62.50%), Query Frame = 1 
Query:    1 RRKGLAKRLVKHCEDACREWGYDEVLLLVEENNKRARRLYSKLGYKMLFRDTKAKKILPDSYQIRDVPCVNVCMRRDLNA 240
            RR+G+   L++ CE+A + WG+ EV+L VEE+N+ AR LY  LGY+ LF D  A++     + +R+V      + + L+A
Sbjct:  143 RRRGIGSLLMQECENAAQRWGFTEVVLQVEEDNREARALYQALGYRELFTDRTARRYDTSGFFLRNVRTAKTTLSKPLDA 222
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10099.128.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
N-acetyltransferase5.640e-5397.83domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Acyl-CoA8.130e-1751.14N-acyltransferase n=1 Tax=Tribonema minus TaxID=30... [more]
Hypothetical2.870e-1340.70protein n=1 Tax=Pyramimonas obovata TaxID=1411642 ... [more]
Hypothetical1.580e-1146.59protein n=1 Tax=Chrysotila carterae TaxID=13221 Re... [more]
Hypothetical1.010e-1046.99protein n=1 Tax=Chloropicon roscoffensis TaxID=146... [more]
N-acetyltransferase3.490e-1065.22domain-containing protein (Fragment) n=1 Tax=Emili... [more]
Hypothetical3.680e-1047.44protein n=1 Tax=Phaeocystis antarctica TaxID=33657... [more]
Gcn5-related1.690e-938.89n-acetyltransferase n=2 Tax=Nannochloropsis gadita... [more]
N-acetyltransferase3.660e-938.89domain-containing protein n=1 Tax=Nannochloropsis ... [more]
Hypothetical5.360e-938.75protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10099contigEcto-sp9_F_contig10099:2406..4663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.4
Seed ortholog evalue6e-45
Seed eggNOG ortholog2880.D7FR70
EggNOG free text desc.Acetyltransferase (GNAT) family
EggNOG OGs2CZ1H@1,2S7TP@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size832
Cds size279
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10099.128.1prot_Ecto-sp9_F_contig10099.128.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10099 2959..4663 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928200.8126566-UTR-Ecto-sp9_F_contig10099:2405..29581622928200.8126566-UTR-Ecto-sp9_F_contig10099:2405..2958Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10099 2406..2958 -
1692277793.184919-UTR-Ecto-sp9_F_contig10099:2405..29581692277793.184919-UTR-Ecto-sp9_F_contig10099:2405..2958Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10099 2406..2958 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928200.8295627-CDS-Ecto-sp9_F_contig10099:2958..30991622928200.8295627-CDS-Ecto-sp9_F_contig10099:2958..3099Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10099 2959..3099 -
1692277793.1963303-CDS-Ecto-sp9_F_contig10099:2958..30991692277793.1963303-CDS-Ecto-sp9_F_contig10099:2958..3099Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10099 2959..3099 -
1622928200.8549626-CDS-Ecto-sp9_F_contig10099:4082..41661622928200.8549626-CDS-Ecto-sp9_F_contig10099:4082..4166Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10099 4083..4166 -
1692277793.2101572-CDS-Ecto-sp9_F_contig10099:4082..41661692277793.2101572-CDS-Ecto-sp9_F_contig10099:4082..4166Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10099 4083..4166 -
1622928200.8718572-CDS-Ecto-sp9_F_contig10099:4609..46631622928200.8718572-CDS-Ecto-sp9_F_contig10099:4609..4663Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10099 4610..4663 -
1692277793.22008-CDS-Ecto-sp9_F_contig10099:4609..46631692277793.22008-CDS-Ecto-sp9_F_contig10099:4609..4663Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10099 4610..4663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10099.128.1

>prot_Ecto-sp9_F_contig10099.128.1 ID=prot_Ecto-sp9_F_contig10099.128.1|Name=mRNA_Ecto-sp9_F_contig10099.128.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=93bp
RRKGLAKRLVKHCEDACREWGYDEVLLLVEENNKRARRLYSKLGYKMLFR
DTKAKKILPDSYQIRDVPCVNVCMRRDLNANIFSNLFAMIRQ*
back to top

mRNA from alignment at Ecto-sp9_F_contig10099:2406..4663-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10099.128.1 ID=mRNA_Ecto-sp9_F_contig10099.128.1|Name=mRNA_Ecto-sp9_F_contig10099.128.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2258bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10099:2406..4663- (Ectocarpus species9 EcSCA_722f female)
AGGAGAAAAGGGTTGGCCAAACGGCTGGTGAAGCATTGCGAAGATGCGTG
CAGGGTAAGCGCGCAAACGCGGCAGCGTACTTCTTTGGTGATACATAAGT
ATTACCATATGCCTTTCCGCTGACAGGCTAATGTAGTACCGCCAAAAGGA
GCAACGATATTGAATTATCGACAATGCAATGCAATGATGATGCTTCTTTC
TCTTGTTTTCTCGCGATACTACAACAGAGGAAGGCAATTCTGACCCTCTC
TTGCTCAGAACACCCGACTGAACAATTTTTCGCCAGAAGAACAGAATTTA
ATTCCATCTCCCCGAGAGCAGGCGCTTGAAGTAGTAGTGAGAAGGGCAGT
TTTTCCCAGGAGTCTGCTGCCCCCAGGCGCGCGAAGCCTTGCAGGGTCGG
CTTCGGTCTTCGGCTAGACGGCCAACGGGGAAACCGTTACAAACCGCGCT
GTGCGGTATGGGACCTCACGCACCAACCAATACTGACTGTTTCCCAGGAA
TGGGGATACGACGAAGTTCTGCTGCTAGTGGAAGAAAACAACAAGCGGGC
GAGAAGACTCTACTCGAAGCTGGGGTACAAGGTACGGAACGGATTTCGCC
GCCGCCGCCGCCGCCGTCGAAATGGGAGCCGCAAAGAAATCACTGCGGTG
ACTTCATTGCTACTATGATCCATCCAGGACTCTTTGTAGAGACGAATTGT
TGTGTTGTTGTAGGGAACATTAAATAAGAACGGGGCGACGAGGGTTATGT
ATACCGGTAGATAACGCCTCTCCTTCTCGGACGACCGCTGATGCTCACCC
TGTTTTGTAGGGTGGGGTATGCGGGGGGGGTTGCCGTTGGACACTGAGAT
ATTTCATCCCTAATTGGACTCAACTTCCGTTTGGACTGCTGCCGTACACT
AAGCCAACACATTATCCGTACACCGATCGCCCCCCCTCCTCCTCATAAGC
TTTTAGATGTTCGGAATGGGCCCGTAACTTAAAAAGTAACGTCAAATTCG
GGTTGATGCTCTAATTCTTCTCTTTGTCGCCACCCCCGAGATCAGGTTGT
TATCTGCAAGAGTTTTGTGTAGGATCCACTGCCGGGTTTTGTTTTCTTGC
TACATCTACGTTCCTTTCTTGTTTTTCGCGAAAGTCTGATCCTGTTATTG
TCAACGGGATATATTTTGATTGCGGGCCCCTTCTGTAGTCCCGTGTGTCA
CCCCAAAGCGATGCTTGAGCATGTGTTGTTGGGTCACCGCTGTAGGGGGG
AGGGGGAGAGTTGGGGTATGTATTCAAAGTGAAGCGTATCTTTACCAGAT
TCCTCTCCACCACACGTCTCTCTCCGTCGAGCGAGTTGGTGACGAGGCTT
CTGCAAGAGAACGAAAAATACAAAACCTCGCTCCCAACCCAAATCCATTC
CCAACCAATCCGGCAGGGCTTTGCACCGTCAGCGCTGTTGCCGCTGCTCA
CTACACCGCTGTTTCCTCTGCCGCTGCTGCTTTCATTGTGGCCTTGATTA
AACGTGTGACGTAAATAATCGTAAGAGTGTCCGTCGTCGATGTGCGTTTT
TTTTCCTCCGGCAGATGCTGTTCAGGGACACGAAGGCCAAGAAGATTCTG
CCGGACTCTTACCAGATCAGGGACGTCCCGTGCGTGAACGTGTGCATGCG
GAGAGATCTCAACGCCAACATCTTCTCCAACCTGTTCGCGATGATCCGCC
AATAGCCCTGCGAAATAGTCGTCGACTGCCATGGGTGCTCCGTACGCTGC
TGATTTGGCTCGTGGGGTCTTTGTTTTGTCTCTCTCGGTTGGCATCGTTA
GTGGCCAATAGCCCGGTGACTTCAATAGGCGCTCCGCAGCTGCTGATGAT
TTGGTGCGTCGGAAATATGTAGGTCTCTCGGTTGGTATGGTATCTAAAGT
TAGCTTGGTATAAAAGTGGCAGCTGACACTCTCGCACAACACTATTGGAA
GCTGGTTTCGGATTCCACAGAGTGCAATAGAAGAGGTGTCGTTCGTTGGT
GGCGTAGCTAAACTACAATAGAACGCAGCCTGTGCTACCCAAAGAGTCTC
AGTTGATTTCGTACGGAGTGGTACGCGTTACAGGCAAGCTTTTTGGCTTG
CTGGGGCTGCTCTCGTACGAATGTACCTGGTGGTAGTGTAGTTTTCTCGT
CCAGTCCTACTGGAGAGCGCAAAACAAGAAGAAAAAAAAATGATCGTGAA
AAATGTATATTCGTTCGTAGTTTACCAACGGGAAGGAAGAGGTTTCTTTG
TGCACGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10099:2406..4663-

>mRNA_Ecto-sp9_F_contig10099.128.1 ID=mRNA_Ecto-sp9_F_contig10099.128.1|Name=mRNA_Ecto-sp9_F_contig10099.128.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10099:2406..4663- (Ectocarpus species9 EcSCA_722f female)
AGGAGAAAAGGGTTGGCCAAACGGCTGGTGAAGCATTGCGAAGATGCGTG
CAGGAGGAGAAAAGGGTTGGCCAAACGGCTGGTGAAGCATTGCGAAGATG
CGTGCAGGGAATGGGGATACGACGAAGTTCTGCTGCTAGTGGAAGAAAAC
AACAAGCGGGCGAGAAGACTCTACTCGAAGCTGGGGTACAAGGAATGGGG
ATACGACGAAGTTCTGCTGCTAGTGGAAGAAAACAACAAGCGGGCGAGAA
GACTCTACTCGAAGCTGGGGTACAAGATGCTGTTCAGGGACACGAAGGCC
AAGAAGATTCTGCCGGACTCTTACCAGATCAGGGACGTCCCGTGCGTGAA
CGTGTGCATGCGGAGAGATCTCAACGCCAACATCTTCTCCAACCTGTTCG
CGATGATCCGCCAATAGATGCTGTTCAGGGACACGAAGGCCAAGAAGATT
CTGCCGGACTCTTACCAGATCAGGGACGTCCCGTGCGTGAACGTGTGCAT
GCGGAGAGATCTCAACGCCAACATCTTCTCCAACCTGTTCGCGATGATCC
GCCAATAG
back to top