mRNA_Ecto-sp9_F_contig10095.127.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10095.127.1
Unique NamemRNA_Ecto-sp9_F_contig10095.127.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10095.127.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCE1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.270e-11
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = -2 
Query:  255 RLFIFMSVSISLGLVPLVLSGAPTTPASRTTLGPSALIVVCSD 383
            RLFI MSVSI+LGLVPLVLS APTTPAS+TTLGPSALIV  SD
Sbjct:   34 RLFILMSVSIALGLVPLVLSVAPTTPASKTTLGPSALIVDWSD 76
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10095.127.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.270e-1186.05protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10095contigEcto-sp9_F_contig10095:4373..4756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928200.6484897-CDS-Ecto-sp9_F_contig10095:4372..47561622928200.6484897-CDS-Ecto-sp9_F_contig10095:4372..4756Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10095 4373..4756 +
1692277793.1398754-CDS-Ecto-sp9_F_contig10095:4372..47561692277793.1398754-CDS-Ecto-sp9_F_contig10095:4372..4756Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10095 4373..4756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10095.127.1prot_Ecto-sp9_F_contig10095.127.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10095 4373..4756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10095.127.1

>prot_Ecto-sp9_F_contig10095.127.1 ID=prot_Ecto-sp9_F_contig10095.127.1|Name=mRNA_Ecto-sp9_F_contig10095.127.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=128bp
PGFYGAAKKLPQIPAEHNNIRSNQSPPTYCSGPRFAVSAQETPCTAVATS
SSTGKRNAFSFHPVKPKGETLDPYMKRTSVSFQLRSLHTTINALGPSVVL
LAGVVGAPLRTRGTSPREMLTLMKMNKR
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mRNA from alignment at Ecto-sp9_F_contig10095:4373..4756+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10095.127.1 ID=mRNA_Ecto-sp9_F_contig10095.127.1|Name=mRNA_Ecto-sp9_F_contig10095.127.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=384bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10095:4373..4756+ (Ectocarpus species9 EcSCA_722f female)
CCCGGGTTCTATGGTGCCGCCAAAAAACTACCACAAATTCCCGCTGAACA
TAACAATATTCGGTCGAACCAGTCTCCTCCCACTTACTGCTCAGGTCCGC
GTTTCGCTGTGTCCGCCCAAGAAACGCCATGCACTGCTGTCGCAACCTCC
AGTTCAACAGGCAAGCGAAACGCCTTTTCCTTCCACCCCGTCAAACCTAA
GGGTGAGACTCTTGATCCGTACATGAAACGAACGAGTGTTTCGTTTCAGC
TGAGATCGCTACATACCACAATCAATGCGCTCGGTCCGAGCGTGGTTCTA
CTCGCCGGAGTCGTGGGGGCCCCGCTGAGAACAAGAGGGACGAGCCCGAG
GGAAATGCTGACGCTCATGAAGATGAACAAGCGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10095:4373..4756+

>mRNA_Ecto-sp9_F_contig10095.127.1 ID=mRNA_Ecto-sp9_F_contig10095.127.1|Name=mRNA_Ecto-sp9_F_contig10095.127.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=768bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10095:4373..4756+ (Ectocarpus species9 EcSCA_722f female)
CCCGGGTTCTATGGTGCCGCCAAAAAACTACCACAAATTCCCGCTGAACA
TAACAATATTCGGTCGAACCAGTCTCCTCCCACTTACTGCTCAGGTCCGC
GTTTCGCTGTGTCCGCCCAAGAAACGCCATGCACTGCTGTCGCAACCTCC
AGTTCAACAGGCAAGCGAAACGCCTTTTCCTTCCACCCCGTCAAACCTAA
GGGTGAGACTCTTGATCCGTACATGAAACGAACGAGTGTTTCGTTTCAGC
TGAGATCGCTACATACCACAATCAATGCGCTCGGTCCGAGCGTGGTTCTA
CTCGCCGGAGTCGTGGGGGCCCCGCTGAGAACAAGAGGGACGAGCCCGAG
GGAAATGCTGACGCTCATGAAGATGAACAAGCGGCCCGGGTTCTATGGTG
CCGCCAAAAAACTACCACAAATTCCCGCTGAACATAACAATATTCGGTCG
AACCAGTCTCCTCCCACTTACTGCTCAGGTCCGCGTTTCGCTGTGTCCGC
CCAAGAAACGCCATGCACTGCTGTCGCAACCTCCAGTTCAACAGGCAAGC
GAAACGCCTTTTCCTTCCACCCCGTCAAACCTAAGGGTGAGACTCTTGAT
CCGTACATGAAACGAACGAGTGTTTCGTTTCAGCTGAGATCGCTACATAC
CACAATCAATGCGCTCGGTCCGAGCGTGGTTCTACTCGCCGGAGTCGTGG
GGGCCCCGCTGAGAACAAGAGGGACGAGCCCGAGGGAAATGCTGACGCTC
ATGAAGATGAACAAGCGG
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