mRNA_Ecto-sp9_F_contig10091.123.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10091.123.1
Unique NamemRNA_Ecto-sp9_F_contig10091.123.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10091.123.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10091contigEcto-sp9_F_contig10091:847..1352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size507
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928200.4477162-CDS-Ecto-sp9_F_contig10091:846..11971622928200.4477162-CDS-Ecto-sp9_F_contig10091:846..1197Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10091 847..1197 +
1692277793.0849319-CDS-Ecto-sp9_F_contig10091:846..11971692277793.0849319-CDS-Ecto-sp9_F_contig10091:846..1197Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10091 847..1197 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928200.4647682-UTR-Ecto-sp9_F_contig10091:1197..13521622928200.4647682-UTR-Ecto-sp9_F_contig10091:1197..1352Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10091 1198..1352 +
1692277793.092294-UTR-Ecto-sp9_F_contig10091:1197..13521692277793.092294-UTR-Ecto-sp9_F_contig10091:1197..1352Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10091 1198..1352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10091.123.1prot_Ecto-sp9_F_contig10091.123.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10091 847..1197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10091.123.1

>prot_Ecto-sp9_F_contig10091.123.1 ID=prot_Ecto-sp9_F_contig10091.123.1|Name=mRNA_Ecto-sp9_F_contig10091.123.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=117bp
LTGVVDGQQSCNLIKEGKQGSTTRRNSSHRLKTQRRAKTPDIHGNRPPPP
PRRYTSKYHNRKSAGRGSEQRLKASRSLNARNDMEELHHQRGEWQQTQLN
RPFPITLEGQKAQKSM*
back to top

mRNA from alignment at Ecto-sp9_F_contig10091:847..1352+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10091.123.1 ID=mRNA_Ecto-sp9_F_contig10091.123.1|Name=mRNA_Ecto-sp9_F_contig10091.123.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=506bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10091:847..1352+ (Ectocarpus species9 EcSCA_722f female)
TTGACTGGCGTGGTCGACGGGCAGCAGTCTTGCAACTTAATTAAAGAAGG
GAAACAGGGTAGCACGACTCGGAGAAATTCATCACACCGACTAAAAACAC
AACGACGTGCGAAAACGCCAGATATCCACGGGAACAGACCACCACCACCA
CCACGCCGCTACACCTCGAAATACCATAACCGAAAGAGCGCAGGGCGTGG
AAGCGAGCAGCGTTTAAAAGCCAGTCGCAGTCTTAACGCAAGGAATGACA
TGGAAGAACTCCATCACCAAAGGGGTGAATGGCAACAGACTCAACTCAAT
AGGCCTTTCCCCATTACGCTCGAGGGCCAAAAAGCACAAAAAAGCATGTA
GAAATTTTGGGCATTAGTCGAGCATATTTGACCGAATTGAGAGCATAATT
GGCAGAAAAACGAGCACAAATGGCAGTTTGGGCATTTTTTCGAGCATCAT
CGGCCCAAAAAAAGAACACACATGCTTTTGCCTAAAACGGGGAGCCTTAC
TTTTTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10091:847..1352+

>mRNA_Ecto-sp9_F_contig10091.123.1 ID=mRNA_Ecto-sp9_F_contig10091.123.1|Name=mRNA_Ecto-sp9_F_contig10091.123.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=702bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10091:847..1352+ (Ectocarpus species9 EcSCA_722f female)
TTGACTGGCGTGGTCGACGGGCAGCAGTCTTGCAACTTAATTAAAGAAGG
GAAACAGGGTAGCACGACTCGGAGAAATTCATCACACCGACTAAAAACAC
AACGACGTGCGAAAACGCCAGATATCCACGGGAACAGACCACCACCACCA
CCACGCCGCTACACCTCGAAATACCATAACCGAAAGAGCGCAGGGCGTGG
AAGCGAGCAGCGTTTAAAAGCCAGTCGCAGTCTTAACGCAAGGAATGACA
TGGAAGAACTCCATCACCAAAGGGGTGAATGGCAACAGACTCAACTCAAT
AGGCCTTTCCCCATTACGCTCGAGGGCCAAAAAGCACAAAAAAGCATGTA
GTTGACTGGCGTGGTCGACGGGCAGCAGTCTTGCAACTTAATTAAAGAAG
GGAAACAGGGTAGCACGACTCGGAGAAATTCATCACACCGACTAAAAACA
CAACGACGTGCGAAAACGCCAGATATCCACGGGAACAGACCACCACCACC
ACCACGCCGCTACACCTCGAAATACCATAACCGAAAGAGCGCAGGGCGTG
GAAGCGAGCAGCGTTTAAAAGCCAGTCGCAGTCTTAACGCAAGGAATGAC
ATGGAAGAACTCCATCACCAAAGGGGTGAATGGCAACAGACTCAACTCAA
TAGGCCTTTCCCCATTACGCTCGAGGGCCAAAAAGCACAAAAAAGCATGT
AG
back to top