mRNA_Ecto-sp9_F_contig10072.113.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10072.113.1
Unique NamemRNA_Ecto-sp9_F_contig10072.113.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10072.113.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10072contigEcto-sp9_F_contig10072:3947..4622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size678
Cds size675
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928199.3973737-CDS-Ecto-sp9_F_contig10072:3946..46211622928199.3973737-CDS-Ecto-sp9_F_contig10072:3946..4621Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10072 3947..4621 +
1692277792.4580815-CDS-Ecto-sp9_F_contig10072:3946..46211692277792.4580815-CDS-Ecto-sp9_F_contig10072:3946..4621Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10072 3947..4621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10072.113.1prot_Ecto-sp9_F_contig10072.113.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10072 3947..4621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10072.113.1

>prot_Ecto-sp9_F_contig10072.113.1 ID=prot_Ecto-sp9_F_contig10072.113.1|Name=mRNA_Ecto-sp9_F_contig10072.113.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=225bp
VEDTIPRAVPSHKAACGSRTSCALKPSPSPERNHGVSERRSGTKFMARFI
YLPDEKEGTTCCGDKTLCMRWKCRVLLSREPPFRIHHSNASTVAPRQLQQ
TNAAAIIDVYSSREQQRKNTASRQDRGRSSGVATPLTRPWSLLYALEMYH
GLKNNVTSILEPHPVLSSEGRPPIPSYDNVPFSRRIYHVARVVISVSLAN
TKTPQQAKRENNARRAIELTRGRTI
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mRNA from alignment at Ecto-sp9_F_contig10072:3947..4622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10072.113.1 ID=mRNA_Ecto-sp9_F_contig10072.113.1|Name=mRNA_Ecto-sp9_F_contig10072.113.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=676bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10072:3947..4622+ (Ectocarpus species9 EcSCA_722f female)
GTAGAAGATACGATTCCCAGGGCTGTACCATCACACAAAGCAGCCTGTGG
TAGCCGAACATCATGCGCGTTGAAACCTAGCCCATCTCCGGAAAGAAACC
ACGGGGTCTCTGAACGACGATCAGGGACCAAATTCATGGCTCGTTTTATC
TACTTGCCGGACGAAAAAGAAGGCACCACCTGCTGCGGGGATAAAACCCT
CTGCATGCGGTGGAAATGCCGCGTTCTTCTCTCTCGGGAGCCGCCGTTTC
GCATTCATCACAGCAACGCATCCACTGTCGCGCCGCGGCAGCTGCAACAA
ACTAACGCTGCTGCTATTATAGATGTCTATTCTTCGAGAGAACAACAGCG
AAAAAACACGGCATCAAGGCAGGACCGCGGACGTTCCAGTGGTGTCGCGA
CTCCTTTGACACGGCCCTGGAGCTTGCTATACGCCCTGGAAATGTACCAC
GGACTAAAAAACAACGTCACGTCGATTCTAGAACCCCACCCTGTTCTCTC
CAGCGAAGGACGACCACCTATTCCGTCGTACGACAACGTTCCGTTTTCCC
GAAGGATTTACCATGTCGCTCGCGTCGTCATCTCTGTCTCTCTCGCAAAT
ACGAAAACACCTCAACAGGCAAAACGCGAAAACAACGCAAGAAGAGCAAT
CGAACTAACGCGAGGTAGGACCATAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10072:3947..4622+

>mRNA_Ecto-sp9_F_contig10072.113.1 ID=mRNA_Ecto-sp9_F_contig10072.113.1|Name=mRNA_Ecto-sp9_F_contig10072.113.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1350bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10072:3947..4622+ (Ectocarpus species9 EcSCA_722f female)
GTAGAAGATACGATTCCCAGGGCTGTACCATCACACAAAGCAGCCTGTGG
TAGCCGAACATCATGCGCGTTGAAACCTAGCCCATCTCCGGAAAGAAACC
ACGGGGTCTCTGAACGACGATCAGGGACCAAATTCATGGCTCGTTTTATC
TACTTGCCGGACGAAAAAGAAGGCACCACCTGCTGCGGGGATAAAACCCT
CTGCATGCGGTGGAAATGCCGCGTTCTTCTCTCTCGGGAGCCGCCGTTTC
GCATTCATCACAGCAACGCATCCACTGTCGCGCCGCGGCAGCTGCAACAA
ACTAACGCTGCTGCTATTATAGATGTCTATTCTTCGAGAGAACAACAGCG
AAAAAACACGGCATCAAGGCAGGACCGCGGACGTTCCAGTGGTGTCGCGA
CTCCTTTGACACGGCCCTGGAGCTTGCTATACGCCCTGGAAATGTACCAC
GGACTAAAAAACAACGTCACGTCGATTCTAGAACCCCACCCTGTTCTCTC
CAGCGAAGGACGACCACCTATTCCGTCGTACGACAACGTTCCGTTTTCCC
GAAGGATTTACCATGTCGCTCGCGTCGTCATCTCTGTCTCTCTCGCAAAT
ACGAAAACACCTCAACAGGCAAAACGCGAAAACAACGCAAGAAGAGCAAT
CGAACTAACGCGAGGTAGGACCATAGTAGAAGATACGATTCCCAGGGCTG
TACCATCACACAAAGCAGCCTGTGGTAGCCGAACATCATGCGCGTTGAAA
CCTAGCCCATCTCCGGAAAGAAACCACGGGGTCTCTGAACGACGATCAGG
GACCAAATTCATGGCTCGTTTTATCTACTTGCCGGACGAAAAAGAAGGCA
CCACCTGCTGCGGGGATAAAACCCTCTGCATGCGGTGGAAATGCCGCGTT
CTTCTCTCTCGGGAGCCGCCGTTTCGCATTCATCACAGCAACGCATCCAC
TGTCGCGCCGCGGCAGCTGCAACAAACTAACGCTGCTGCTATTATAGATG
TCTATTCTTCGAGAGAACAACAGCGAAAAAACACGGCATCAAGGCAGGAC
CGCGGACGTTCCAGTGGTGTCGCGACTCCTTTGACACGGCCCTGGAGCTT
GCTATACGCCCTGGAAATGTACCACGGACTAAAAAACAACGTCACGTCGA
TTCTAGAACCCCACCCTGTTCTCTCCAGCGAAGGACGACCACCTATTCCG
TCGTACGACAACGTTCCGTTTTCCCGAAGGATTTACCATGTCGCTCGCGT
CGTCATCTCTGTCTCTCTCGCAAATACGAAAACACCTCAACAGGCAAAAC
GCGAAAACAACGCAAGAAGAGCAATCGAACTAACGCGAGGTAGGACCATA
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