mRNA_Ecto-sp9_F_contig10060.104.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10060.104.1 vs.
Match: Polymorphic (Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI) HSP 1 Score: 384 bits (985), Expect = 9.440e-122 Identity = 198/203 (97.54%), Postives = 199/203 (98.03%), Query Frame = 1
Query: 1 FVSSAGTGFAFPTTSFVSNSAQIGGAVATFGSGGSKGVEDIQPPNPITFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAENINFSGNGFDCPTGMFLAYNESDDLFETVCDGCQTXXXXXAFAEPLLVPMCTDLLEHSTSPDGKLTLEALSIQRGY 609
FVSSAGTG AFPTTSFVSNSAQIGGAVATFGSGGSKGVEDI+PPNP TFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAE INFSGNGFDCPTGMFLAYNESDDLFETVCDGCQTXXXXXAFAEPLLVPMC DLLEHSTSPDGKLTLEALSIQRGY
Sbjct: 768 FVSSAGTGLAFPTTSFVSNSAQIGGAVATFGSGGSKGVEDIEPPNPTTFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAEKINFSGNGFDCPTGMFLAYNESDDLFETVCDGCQTXXXXXAFAEPLLVPMCRDLLEHSTSPDGKLTLEALSIQRGY 970
BLAST of mRNA_Ecto-sp9_F_contig10060.104.1 vs.
Match: Polymorphic (Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 310 bits (793), Expect = 4.340e-94 Identity = 156/203 (76.85%), Postives = 171/203 (84.24%), Query Frame = 1
Query: 1 FVSSAGTGFAFPTTSFVSNSAQIGGAVATFGSGGSKGVEDIQPPNPITFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAENINFSGNGFDCPTGMFLAYNESDDLFETVCDGCQTXXXXXAFAEPLLVPMCTDLLEHSTSPDGKLTLEALSIQRGY 609
FVS AG G AF T+F SNSAQ+GGAVA FGSG SKGV DI+PPNP TF+RC FVGNRATATGGAID+AAG+D+FVDTTFEDNAAGTGGALRLAGTASI +CSFVEN+S+D GGAAVSNIG V S ENI+FS NGFDCP+G FL YN S DLFE VC+GCQT AFA+PLLVP CTDLLEHSTS DG+ TLE LSIQ GY
Sbjct: 959 FVSGAGAGPAFANTTFTSNSAQVGGAVAVFGSGNSKGVADIEPPNPTTFERCWFVGNRATATGGAIDSAAGHDYFVDTTFEDNAAGTGGALRLAGTASINSCSFVENFSDDEGGAAVSNIGTVESTENISFSANGFDCPSGTFLGYNASADLFEAVCNGCQTACVGCAFADPLLVPTCTDLLEHSTSSDGRDTLETLSIQAGY 1161
BLAST of mRNA_Ecto-sp9_F_contig10060.104.1 vs.
Match: Polymorphic (Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI) HSP 1 Score: 235 bits (599), Expect = 5.280e-68 Identity = 122/203 (60.10%), Postives = 144/203 (70.94%), Query Frame = 1
Query: 1 FVSSAGTGFAFPTTSFVSNSAQIGGAVATFGSGGSKGVEDIQPPNPITFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAENINFSGNGFDCPTGMFLAYNESDDLFETVCDGCQTXXXXXAFAEPLLVPMCTDLLEHSTSPDGKLTLEALSIQRGY 609
FVS G G F F+SNSAQ+GGAV+T GSG K DI PPNP TFD C F+ NRATATGGAID+AAG D FV++TF+ N AGTGG LRLAGTAS+ CSFV+N S+D GGAAVSNIG + S ENI FSGN FDC GM+L YN S + +E C GC+T F EP + P CTD++EH TS G +TLE L ++RGY
Sbjct: 605 FVSGTGFGPIFTGARFISNSAQVGGAVSTVGSGNLKENADISPPNPTTFDHCHFIDNRATATGGAIDSAAGQDAFVNSTFQGNRAGTGGGLRLAGTASLDTCSFVDNISDDQGGAAVSNIGSLLSVENITFSGNVFDCDPGMYLDYNASGNPYEAACGGCETACDG-CFFEPPVPPTCTDVMEHITSAGGTVTLEDLPVERGY 806
BLAST of mRNA_Ecto-sp9_F_contig10060.104.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI) HSP 1 Score: 228 bits (581), Expect = 7.570e-66 Identity = 120/203 (59.11%), Postives = 140/203 (68.97%), Query Frame = 1
Query: 1 FVSSAGTGFAFPTTSFVSNSAQIGGAVATFGSGGSKGVEDIQPPNPITFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAENINFSGNGFDCPTGMFLAYNESDDLFETVCDGCQTXXXXXAFAEPLLVPMCTDLLEHSTSPDGKLTLEALSIQRGY 609
FVS G F S VSNSAQ+GGA++ GSG S ED P P TF++CRF NRA ATGGA+DTAAG D FV++ FE N AGTGGALRLAGTA + NCSFVEN S+DGGGAAVSNIG VSS N++FS N + C GMFL ES L+E +CDGC +F EP LVP C+D LEHS S G +TL+AL I+ GY
Sbjct: 326 FVSGTAVGPTFVNISLVSNSAQVGGAISLIGSGTSFNPEDYTPA-PTTFEQCRFTSNRAIATGGAVDTAAGQDKFVNSVFEGNTAGTGGALRLAGTAEVNNCSFVENVSDDGGGAAVSNIGFVSSVSNLSFSRNVYGCQEGMFLECEESGTLYEAICDGCPVECEGCSFEEPQLVPKCSDALEHSNSSGGTVTLDALVIEPGY 527
BLAST of mRNA_Ecto-sp9_F_contig10060.104.1 vs.
Match: Polymorphic (outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI) HSP 1 Score: 205 bits (521), Expect = 1.840e-57 Identity = 110/204 (53.92%), Postives = 138/204 (67.65%), Query Frame = 1
Query: 1 FVSSAGTGFAFPTTSFVSNSAQIGGAVATFGSGGSKGVEDIQPPNPITFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAENINFSGNGFDCPTGMFLAY-NESDDLFETVCDGCQTXXXXXAFAEPLLVPMCTDLLEHSTSPDGKLTLEALSIQRGY 609
F+S TG F +F SN A+IGGAV+ FG G +E NP TFDRCRFV N+ +TGGAI++AAG D F + FE N+AGTGGALRLAG A NCSFV N +++G GAAVSNIG +S+ E+ FSGN FDC + M+L + +SDD FE +C GC+ F E LLVP CT+++EH+TS G +TLEALSI GY
Sbjct: 972 FLSGVDTGPIFTEVNFTSNVAEIGGAVSLFGCG----IEPSGGDNPTTFDRCRFVDNQGASTGGAIESAAGKDAFNGSIFEGNSAGTGGALRLAGAAYFFNCSFVGNTADEGEGAAVSNIGYISAVESNFFSGNRFDCRSSMYLDFIQQSDDPFEVMCSGCEVTCEGCVFDEGLLVPACTEVMEHATSDGGNITLEALSIDSGY 1171
BLAST of mRNA_Ecto-sp9_F_contig10060.104.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI) HSP 1 Score: 204 bits (518), Expect = 4.470e-57 Identity = 107/203 (52.71%), Postives = 131/203 (64.53%), Query Frame = 1
Query: 1 FVSSAGTGFAFPTTSFVSNSAQIGGAVATFGSGGSKGVEDIQPPNPITFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAENINFSGNGFDCPTGMFLAYNESDDLFETVCDGCQTXXXXXAFAEPLLVPMCTDLLEHSTSPDGKLTLEALSIQRGY 609
FVS AG GF F AV+ GSG KG D++ P+P TFDRC FVGN+A+ATGGA ++AAG D FV F N AGTGGALR+AGTAS+ NCSFV+N S+DG GAA+SNIG +S +I FS N FDCP+G FL N S D FE VC GC F + L+ P C++++ HSTS G TL+ +SI RGY
Sbjct: 575 FVSGAGVGFVFXXXXXXXXXXXXXXAVSIVGSGNLKGFFDLEWPSPTTFDRCSFVGNQASATGGAFESAAGQDAFVGNVFVGNKAGTGGALRMAGTASVENCSFVDNVSDDGEGAALSNIGFISKMAHIYFSDNVFDCPSGTFLDLNASGDPFEAVCAGCDIVCDGCVFEQGLVGPACSEVMAHSTSTGGNTTLQEVSIDRGY 777
BLAST of mRNA_Ecto-sp9_F_contig10060.104.1 vs.
Match: Polymorphic (Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 203 bits (516), Expect = 8.840e-57 Identity = 109/204 (53.43%), Postives = 129/204 (63.24%), Query Frame = 1
Query: 1 FVSSAGTGFAFPTTSFVSNSAQIGGAVATFGSGGSKGVEDIQPPNPITFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAENINFSGNGFDCPTGMFLAYNESDDLFETVCDGCQTXXXXXA-FAEPLLVPMCTDLLEHSTSPDGKLTLEALSIQRGY 609
FVS A G F +N AQ+GGAV+T GSG K + PPNP F RCRFV N+A ATGGA++TAAG D FVD F GTGGALRLAGTA++ NCSFVEN S DGGGAAVSNIG +S +NI++ GN F C GMFL +N S D E CDGCQT F EP LVP+C +EH+ S G + L + G+
Sbjct: 1414 FVSGADVGPVLSDVLFEANVAQVGGAVSTVGSGNLKEYAGLAPPNPTIFTRCRFVNNQAAATGGAVETAAGQDVFVDCLFXXXXXGTGGALRLAGTATLENCSFVENVSEDGGGAAVSNIGSISKMDNISYRGNVFSCALGMFLDFNASGDPNEAACDGCQTPCDDDGCFEEPPLVPICALAMEHTGSAGGTNNITLLRVDDGF 1617
BLAST of mRNA_Ecto-sp9_F_contig10060.104.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 199 bits (507), Expect = 1.110e-55 Identity = 111/203 (54.68%), Postives = 133/203 (65.52%), Query Frame = 1
Query: 1 FVSSAGTGFAFPTTSFVSNSAQIGGAVATFGSGGSKGVEDIQPPNPITFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAENINFSGNGFDCPTGMFLAYNESDDLFETVCDGCQTXXXXXAFAEPLLVPMCTDLLEHSTSPDGKLTLEALSIQRGY 609
+VS G F F SNSAQ+GGAV++ GSG KG E+ Q P TF RCRF NRATATGGA+D+A+G D F DT F N A TGGALRLAG AS++NCSFVEN S+DG GAAVSN+G++S N FSGN F+C FL Y D L E C GCQT +P +VP+C+D++ HS S G +TLE LSI GY
Sbjct: 369 YVSDTAIGPTFSDVIFDSNSAQVGGAVSSLGSGNVKGGENDQLL-PTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENLSDDGEGAAVSNVGVISEISNTTFSGNVFNCAPDTFLNYTSGDALDEA-CSGCQTTCDGCV--QPPVVPLCSDVIPHSRSDGGLVTLETLSIDPGY 567
BLAST of mRNA_Ecto-sp9_F_contig10060.104.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE) HSP 1 Score: 188 bits (478), Expect = 1.090e-51 Identity = 106/208 (50.96%), Postives = 135/208 (64.90%), Query Frame = 1
Query: 1 FVSSAGTGFAFPTTSFVSNSAQIGGAVATFGSGGSKGVEDIQPPNPITFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAENINFSGNGFDCPTGMFLAYNE-----SDDLFETVCDGCQTXXXXXAFAEPLLVPMCTDLLEHSTSPDGKLTLEALSIQRGY 609
F+S TG F +F SN A+IGGAV++F G +E NP TFDRCRFV N+ +TGGAI++AAG D F + FE N+AGTGGALRLAG+ NC+FV N ++DG GAAVSNIG +S EN FSGN FDC + M+L + + SD FE +C GC+ + LLVP CT+++EH+TS G +TLEALSI GY
Sbjct: 698 FLSGVDTGPIFTEVNFTSNVAEIGGAVSSFRCG----IEPSGVDNPTTFDRCRFVDNQGASTGGAIESAAGKDAFNGSIFEGNSAGTGGALRLAGSEYFFNCTFVGNTADDGEGAAVSNIGYISEMENTFFSGNRFDCRSRMYLDFIQVRTFASDYPFEVMCSGCEVTCKGCV-NDGLLVPACTEVMEHATSDGGNITLEALSIDSGY 900
BLAST of mRNA_Ecto-sp9_F_contig10060.104.1 vs.
Match: Adhesin-like (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI) HSP 1 Score: 187 bits (475), Expect = 2.760e-51 Identity = 101/204 (49.51%), Postives = 130/204 (63.73%), Query Frame = 1
Query: 1 FVSSAGTGFAFPTTSFVSNSAQIGGAVATFGSGGSKGVEDIQPPNPITFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAENINFSGNGFDCPTGMFLAYNESDD-LFETVCDGCQTXXXXXAFAEPLLVPMCTDLLEHSTSPDGKLTLEALSIQRGY 609
FVS AG G F SF+SN AQ+GGA + FGSG +G+ + P P FDRCRF+ N AT +GGA+D+AAG D V++ F+ N+A GGALRLAG S GAAVSNIG+VS+ N +F+GNGF C +FL Y+ +D+ FE VCDGC+ +F EP VP C+D+++H TS GK+TLE LSI GY
Sbjct: 776 FVSGAGIGPTFSDVSFISNFAQVGGAASVFGSGNDRGM--LSPIIPTKFDRCRFIDNVATTSGGAVDSAAGQDIVVNSVFKGNSAEVGGALRLAGXXXXXXXXXXXXVSGRQEGAAVSNIGLVSTMANSSFTGNGFTCGPDLFLEYDATDNGTFEAVCDGCRVACDGCSFDEPPAVPTCSDVMDHGTSTGGKVTLETLSIDPGY 977 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10060.104.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10060.104.1 >prot_Ecto-sp9_F_contig10060.104.1 ID=prot_Ecto-sp9_F_contig10060.104.1|Name=mRNA_Ecto-sp9_F_contig10060.104.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=203bp FVSSAGTGFAFPTTSFVSNSAQIGGAVATFGSGGSKGVEDIQPPNPITFDback to top mRNA from alignment at Ecto-sp9_F_contig10060:3115..4210+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10060.104.1 ID=mRNA_Ecto-sp9_F_contig10060.104.1|Name=mRNA_Ecto-sp9_F_contig10060.104.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1096bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10060:3115..4210+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10060:3115..4210+ >mRNA_Ecto-sp9_F_contig10060.104.1 ID=mRNA_Ecto-sp9_F_contig10060.104.1|Name=mRNA_Ecto-sp9_F_contig10060.104.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1218bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10060:3115..4210+ (Ectocarpus species9 EcSCA_722f female)back to top |