mRNA_Ecto-sp9_F_contig10059.96.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10059.96.1
Unique NamemRNA_Ecto-sp9_F_contig10059.96.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10059.96.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIP8_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 9.160e-58
Identity = 102/107 (95.33%), Postives = 103/107 (96.26%), Query Frame = 1 
Query:    4 VFTDFFVQKVVRGRPIPHVGTALFLKDFPSGFPEFVSCVGQMKPAKFKETSGPDVPHGFYEYARDAASRNAKMMMAKRSQRKSKPRIGPADSGKRVPSGGGEGGEGP 324
            VFTDFFVQKVVRGRPIPHVGTALFLKDFPSGFPEFVSCVGQMKPAKFKETSG DVPHGFYEYARDAASRNAK+MMAKRSQRKSKPR GP DSGKRV SGGGEGGEGP
Sbjct:  170 VFTDFFVQKVVRGRPIPHVGTALFLKDFPSGFPEFVSCVGQMKPAKFKETSGLDVPHGFYEYARDAASRNAKLMMAKRSQRKSKPRSGPTDSGKRVTSGGGEGGEGP 276
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BLAST of mRNA_Ecto-sp9_F_contig10059.96.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFP9_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 7.440e-42
Identity = 76/81 (93.83%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:    4 VFTDFFVQKVVRGRPIPHVGTALFLKDFPSGFPEFVSCVGQMKPAKFKETSGPDVPHGFYEYARDAASRNAKMMMAKRSQR 246
            VFTDFFVQKVVRGRPIPHVGTALFLKDFPSGFPEFVSCVGQMK AKFKETSGPDVPHGFYEYARDAASRNAK+MMAK + R
Sbjct:   14 VFTDFFVQKVVRGRPIPHVGTALFLKDFPSGFPEFVSCVGQMKLAKFKETSGPDVPHGFYEYARDAASRNAKIMMAKPAAR 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10059.96.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized9.160e-5895.33protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.440e-4293.83protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10059contigEcto-sp9_F_contig10059:1368..3253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.9
Seed ortholog evalue1.9e-50
Seed eggNOG ortholog2880.D7FIP8
KEGG koko:K04460
KEGG Pathwayko04010,map04010
GOsGO:0000166,GO:0003008,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006082,GO:0007588,GO:0008150,GO:0008152,GO:0008465,GO:0009987,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0016618,GO:0019752,GO:0022607,GO:0030267,GO:0031406,GO:0032501,GO:0032787,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043177,GO:0043436,GO:0043648,GO:0043933,GO:0044085,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046487,GO:0046983,GO:0048037,GO:0050661,GO:0050662,GO:0051259,GO:0051287,GO:0055114,GO:0065003,GO:0070402,GO:0071704,GO:0071840,GO:0097159,GO:1901265,GO:1901363
EggNOG free text desc.response to arachidonic acid
EggNOG OGsCOG0639@1,KOG0376@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Exons4
Model size326
Cds size324
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10059.96.1prot_Ecto-sp9_F_contig10059.96.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10059 1368..3252 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928198.073396-CDS-Ecto-sp9_F_contig10059:1367..13971622928198.073396-CDS-Ecto-sp9_F_contig10059:1367..1397Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10059 1368..1397 +
1692277791.4664714-CDS-Ecto-sp9_F_contig10059:1367..13971692277791.4664714-CDS-Ecto-sp9_F_contig10059:1367..1397Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10059 1368..1397 +
1622928198.085001-CDS-Ecto-sp9_F_contig10059:1952..20791622928198.085001-CDS-Ecto-sp9_F_contig10059:1952..2079Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10059 1953..2079 +
1692277791.479321-CDS-Ecto-sp9_F_contig10059:1952..20791692277791.479321-CDS-Ecto-sp9_F_contig10059:1952..2079Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10059 1953..2079 +
1622928198.0957-CDS-Ecto-sp9_F_contig10059:2534..26111622928198.0957-CDS-Ecto-sp9_F_contig10059:2534..2611Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10059 2535..2611 +
1692277791.4891155-CDS-Ecto-sp9_F_contig10059:2534..26111692277791.4891155-CDS-Ecto-sp9_F_contig10059:2534..2611Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10059 2535..2611 +
1622928198.105872-CDS-Ecto-sp9_F_contig10059:3162..32521622928198.105872-CDS-Ecto-sp9_F_contig10059:3162..3252Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10059 3163..3252 +
1692277791.5019124-CDS-Ecto-sp9_F_contig10059:3162..32521692277791.5019124-CDS-Ecto-sp9_F_contig10059:3162..3252Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10059 3163..3252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10059.96.1

>prot_Ecto-sp9_F_contig10059.96.1 ID=prot_Ecto-sp9_F_contig10059.96.1|Name=mRNA_Ecto-sp9_F_contig10059.96.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=108bp
TVFTDFFVQKVVRGRPIPHVGTALFLKDFPSGFPEFVSCVGQMKPAKFKE
TSGPDVPHGFYEYARDAASRNAKMMMAKRSQRKSKPRIGPADSGKRVPSG
GGEGGEGP
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mRNA from alignment at Ecto-sp9_F_contig10059:1368..3253+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10059.96.1 ID=mRNA_Ecto-sp9_F_contig10059.96.1|Name=mRNA_Ecto-sp9_F_contig10059.96.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1886bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10059:1368..3253+ (Ectocarpus species9 EcSCA_722f female)
ACTGTCTTCACCGACTTCTTCGTGCAGAAGGTCGGTTGCTGTTGGCGTTG
TCAGGTGCCTCTCTCTCCTCTCTCCGACGTACCGGTGCTCTAGCGAGCAA
GGAGGGTGTGGAGGTCGCGCCTTTGTTCGGCGATGGGGGCGTCTGGTTGT
CGTCAACGTAAAGTCTGGCTTGCGTATGATAGTACATGACAGGCCCCAAC
GTCAGAACCTAGAAAGGAGGTACCATTTCGGCCTGCGTTCCTCTTCAAAT
TCAGAAGAGATTCCACTCAACCCTGCCATCCCCGACCCTTGGTGATGTGA
GAGCTTGGTCCGGTGAGAACCCGGCGTGCTCCGTCCCGGATTTTTAGGGA
TGCGAGGTCAACGGTCTAACGACTATTGTACGGCATGCACGACTATGAGT
ACACCGCCAGACCCACGTTGTGGCTGTCGTTTGCCCCGAACAGAGAAAAA
TGTACTAAATTGACGTTTCTCGCCTGTTGGCCAATCCTGTGGTTGGCGGC
GGTGGAAGGCGGAAGGCACCAAACGAGAATCGCGGAGTACGGACCACTTA
CGACCGTTTCTCGTGCCTTTCGAACCGGTGTCTAGGTGGTGAGGGGGAGG
CCGATCCCTCACGTGGGCACGGCGTTGTTCCTGAAGGACTTCCCGAGCGG
CTTTCCGGAGTTCGTGAGCTGCGTTGGCCAGATGAAGCCGGCCAAGTTCA
AGGAAACCTCGGGTAAGCCGCCACCGCCACCGCCGCCGCCGCCGCTGATG
CTGCTGCTGTGGCACGGTTGCTAGCCTTGCCGCCGCTGATGCCATTCACG
TTGTTTCACTTCTTCTTGTGTTCTGGGTCTGCTACTGCAGGGTAGGGGGC
GTTTCTGGTTTTGGTATAGTTGCTGCGACTTTCTGCTCACCGCTGTTGTC
TCGGCTGATGTCGCAGCTGTTTGGAACGCCTGCTGTTGCGCACGGCTACG
GCCTTGGCTTCGGAGGCGCCGCTGTTGTTACTACTGTATCATGCTGCTGT
CGCTGCCGTCGCTGTCTTCCTACGATCTGGAAATCCCCATTCGTTTGCTT
CGGCCTTGAGGGGGGGGGGGGGGGCTGCCTGTTTGCCGCATCGTGCGTGA
TGGTGAGCCCGACAAAACAAAACGAACTTGAGCAACAATAACGACAACAA
CAATAATACAACGACAGGACCTGATGTCCCGCACGGATTCTACGAGTACG
CCCGGGACGCGGCTAGCCGTAACGCGAAGATGATGATGGCGAAGGTGAGA
AGAGAGAGGGCGGGGGGGAGACAGATATGTATAGGGTTGTCTTTTGCGCG
AGTAGCGGTGCTTGAGAATGGACGGGAGGATCGGTCGGTGTGTAGTGGTG
GGAGGTGACTTTGCAGCTGTGTGCCCCCCTCCGCGTAAAGATAGTTCTGT
GGTGAGCCTTTCGTTTGTGGCAAGATGAGATATTATAGTTGTGTTGGAAG
TGGGCGATGACTTGCGGGGCTTGGTTCGGTGGTAGACAGTGCCATTTTGG
CCTGATATGCACGGTCTTACGTGTCCGATAGTCTACGCACTGCTGTGTTG
CCAGAGCTTGGTGCCCGTGGTTACAGAGTAGGCGTGTGTACTTCATACAC
GGTGCCCGTCTGTGTTGCTGTCTTTTCGCGGTTTTGCGAGCCGGGGATCT
GGGGTACATGTCCACGAGCAGTGGCGAACCATGTCCTAATCGACATCGAT
GCCACAACCACCGCCCTGCGACGGCACGCTCCGACAACTCAGGAAACACC
GCTACTATTGCCTTCTTGTGACTGTCCCCTCTCCCCCGCCACCAGAGAAG
CCAGCGGAAGTCCAAGCCCCGGATCGGCCCCGCAGACAGCGGCAAGAGGG
TTCCCAGCGGCGGCGGAGAAGGCGGAGAAGGCCCAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10059:1368..3253+

>mRNA_Ecto-sp9_F_contig10059.96.1 ID=mRNA_Ecto-sp9_F_contig10059.96.1|Name=mRNA_Ecto-sp9_F_contig10059.96.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10059:1368..3253+ (Ectocarpus species9 EcSCA_722f female)
ACTGTCTTCACCGACTTCTTCGTGCAGAAGACTGTCTTCACCGACTTCTT
CGTGCAGAAGGTGGTGAGGGGGAGGCCGATCCCTCACGTGGGCACGGCGT
TGTTCCTGAAGGACTTCCCGAGCGGCTTTCCGGAGTTCGTGAGCTGCGTT
GGCCAGATGAAGCCGGCCAAGTTCAAGGAAACCTCGGGTGGTGAGGGGGA
GGCCGATCCCTCACGTGGGCACGGCGTTGTTCCTGAAGGACTTCCCGAGC
GGCTTTCCGGAGTTCGTGAGCTGCGTTGGCCAGATGAAGCCGGCCAAGTT
CAAGGAAACCTCGGGACCTGATGTCCCGCACGGATTCTACGAGTACGCCC
GGGACGCGGCTAGCCGTAACGCGAAGATGATGATGGCGAAGGACCTGATG
TCCCGCACGGATTCTACGAGTACGCCCGGGACGCGGCTAGCCGTAACGCG
AAGATGATGATGGCGAAGAGAAGCCAGCGGAAGTCCAAGCCCCGGATCGG
CCCCGCAGACAGCGGCAAGAGGGTTCCCAGCGGCGGCGGAGAAGGCGGAG
AAGGCCCAAGAAGCCAGCGGAAGTCCAAGCCCCGGATCGGCCCCGCAGAC
AGCGGCAAGAGGGTTCCCAGCGGCGGCGGAGAAGGCGGAGAAGGCCCA
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