mRNA_Ecto-sp9_F_contig10057.94.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10057.94.1
Unique NamemRNA_Ecto-sp9_F_contig10057.94.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10057.94.1 vs.
Match: CRM1_C (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK2_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.160e-31
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 VFMKSHLGMLETPETQPVLLAGMEYLVAISEVPDDEVFKICLEFYHHFSSDLYQASATRH 180
            VFMKSHLGMLETPETQPVLLAGMEYLVAISEVPDDEVFKICLEFYHHFSSDLYQASATRH
Sbjct:  170 VFMKSHLGMLETPETQPVLLAGMEYLVAISEVPDDEVFKICLEFYHHFSSDLYQASATRH 229
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BLAST of mRNA_Ecto-sp9_F_contig10057.94.1 vs.
Match: CRM1_C (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS67_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 4.520e-27
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 VFMKSHLGMLETPETQPVLLAGMEYLVAISEVPDDEVFKICLEFYHHFSSDLYQ 162
            VFMKSHLGMLETPETQPVLLAGMEYLV+ISEVPDDEVFKICLEFYHHFSSDLYQ
Sbjct:  159 VFMKSHLGMLETPETQPVLLAGMEYLVSISEVPDDEVFKICLEFYHHFSSDLYQ 212
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BLAST of mRNA_Ecto-sp9_F_contig10057.94.1 vs.
Match: Exportin1 (n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ33_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.230e-14
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    4 FMKSHLGMLETPETQPVLLAGMEYLVAISEVPDDEVFKICLEFYHHFSSDLYQASA 171
            F++ HL  LE PE    LL G+ Y+V ISEVPDDEVFKICLE+YH  S DLYQ+ +
Sbjct:  300 FLRPHLSTLEVPEGMAALLEGLSYVVRISEVPDDEVFKICLEYYHALSQDLYQSDS 355
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BLAST of mRNA_Ecto-sp9_F_contig10057.94.1 vs.
Match: Hypothetical (protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AWL8_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.540e-13
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    4 FMKSHLGMLETPETQPVLLAGMEYLVAISEVPDDEVFKICLEFYHHFSSDLYQASATR 177
            F ++HL +LETPE    L+ GM YL+ ISEVPD+EVFKICLE++H FSS+LY AS T+
Sbjct:  327 FFRTHLSLLETPEQTGSLMQGMLYLIGISEVPDNEVFKICLEYWHVFSSELY-ASETQ 383
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BLAST of mRNA_Ecto-sp9_F_contig10057.94.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZGK4_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 5.340e-13
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    4 FMKSHLGMLETPETQPVLLAGMEYLVAISEVPDDEVFKICLEFYHHFSSDLYQA 165
            F K+HL  LET E+Q  LL GM YLV +SEVPD E+F+ICLE +H  + DLYQA
Sbjct:   89 FFKAHLRTLETNESQQALLTGMFYLVRVSEVPDVEIFRICLEAWHMLAQDLYQA 142
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BLAST of mRNA_Ecto-sp9_F_contig10057.94.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YZM0_TRICV)

HSP 1 Score: 70.5 bits (171), Expect = 9.980e-13
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    4 FMKSHLGMLETPETQPVLLAGMEYLVAISEVPDDEVFKICLEFYHHFSSDLYQASATRH 180
            F K+HL +LET E+Q  LL GM YLV +SEVPD E+F+ICLE +H  + DLYQA    H
Sbjct:  339 FFKAHLRILETQESQQALLTGMFYLVRVSEVPDVEIFRICLEAWHMLAQDLYQAENKLH 397
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BLAST of mRNA_Ecto-sp9_F_contig10057.94.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YZH3_TRICV)

HSP 1 Score: 70.5 bits (171), Expect = 1.000e-12
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    4 FMKSHLGMLETPETQPVLLAGMEYLVAISEVPDDEVFKICLEFYHHFSSDLYQASATRH 180
            F K+HL +LET E+Q  LL GM YLV +SEVPD E+F+ICLE +H  + DLYQA    H
Sbjct:  339 FFKAHLRILETQESQQALLTGMFYLVRVSEVPDVEIFRICLEAWHMLAQDLYQAENKLH 397
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BLAST of mRNA_Ecto-sp9_F_contig10057.94.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X2G4_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.500e-12
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    4 FMKSHLGMLETPETQPVLLAGMEYLVAISEVPDDEVFKICLEFYHHFSSDLYQASATR 177
            F K+HL ++ET E  P+LL G+ YLV IS VPD+EVF+ICL+F+H F+ DLY     R
Sbjct:  328 FFKAHLRLVETREQGPLLLDGLNYLVRISAVPDNEVFQICLDFWHAFAQDLYATETGR 385
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BLAST of mRNA_Ecto-sp9_F_contig10057.94.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1W3N7_HETAK)

HSP 1 Score: 67.8 bits (164), Expect = 7.940e-12
Identity = 31/45 (68.89%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    4 FMKSHLGMLETPETQPVLLAGMEYLVAISEVPDDEVFKICLEFYH 138
            F K+HL +LET E Q  LL G+ YLV ISE PDDEVFKICLE+YH
Sbjct:  325 FFKAHLSLLETAERQQALLQGLYYLVCISEAPDDEVFKICLEYYH 369
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BLAST of mRNA_Ecto-sp9_F_contig10057.94.1 vs.
Match: Exportin (n=8 Tax=Chlamydomonadales TaxID=3042 RepID=A8J2W2_CHLRE)

HSP 1 Score: 67.8 bits (164), Expect = 8.920e-12
Identity = 31/57 (54.39%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    4 FMKSHLGMLETPETQPVLLAGMEYLVAISEVPDDEVFKICLEFYHHFSSDLYQASAT 174
            F K+H+G+LETPETQ  LLAG++YLV IS V + EVFK CL++++ F  D+Y +S +
Sbjct:  320 FFKAHIGILETPETQQQLLAGLDYLVNISYVDNTEVFKTCLDYWNFFVPDIYTSSCS 376
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10057.94.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
CRM1_C2.160e-31100.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
CRM1_C4.520e-2798.15domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Exportin13.230e-1460.71n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Y... [more]
Hypothetical1.540e-1362.07protein n=2 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Hypothetical5.340e-1361.11protein (Fragment) n=1 Tax=Pseudictyota dubia TaxI... [more]
Hypothetical9.980e-1357.63protein n=1 Tax=Trieres chinensis TaxID=1514140 Re... [more]
Hypothetical1.000e-1257.63protein n=1 Tax=Trieres chinensis TaxID=1514140 Re... [more]
Hypothetical3.500e-1255.17protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Hypothetical7.940e-1268.89protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Exportin8.920e-1254.39n=8 Tax=Chlamydomonadales TaxID=3042 RepID=A8J2W2_... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10057contigEcto-sp9_F_contig10057:3312..4134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.7
Seed ortholog evalue3.7e-21
Seed eggNOG ortholog2880.D8LS67
Preferred nameXPO1
KEGG koko:K03939,ko:K14290
KEGG TC1.I.1,3.D.1.6
KEGG Pathwayko00190,ko01100,ko03008,ko03013,ko04013,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,ko05164,ko05166,ko05169,map00190,map01100,map03008,map03013,map04013,map04714,map04723,map04932,map05010,map05012,map05016,map05164,map05166,map05169
KEGG ModuleM00143
GOsGO:0000003,GO:0000054,GO:0000055,GO:0000056,GO:0000122,GO:0000775,GO:0000776,GO:0000902,GO:0000904,GO:0003006,GO:0003674,GO:0005049,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0005911,GO:0006355,GO:0006357,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0007275,GO:0008104,GO:0008150,GO:0008565,GO:0009266,GO:0009408,GO:0009506,GO:0009553,GO:0009555,GO:0009628,GO:0009653,GO:0009826,GO:0009846,GO:0009856,GO:0009860,GO:0009889,GO:0009890,GO:0009892,GO:0009932,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016049,GO:0019219,GO:0019222,GO:0019904,GO:0022414,GO:0022613,GO:0030054,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031503,GO:0032386,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032989,GO:0032991,GO:0033036,GO:0033157,GO:0033750,GO:0034613,GO:0040007,GO:0042221,GO:0042254,GO:0042493,GO:0042886,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0044706,GO:0045184,GO:0045892,GO:0045934,GO:0046822,GO:0046825,GO:0046907,GO:0048229,GO:0048468,GO:0048519,GO:0048523,GO:0048588,GO:0048589,GO:0048856,GO:0048868,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051252,GO:0051253,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0055044,GO:0060255,GO:0060341,GO:0060560,GO:0065007,GO:0070201,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0080090,GO:0090087,GO:0098687,GO:0140104,GO:0140142,GO:1902679,GO:1903506,GO:1903507,GO:1903827,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.nuclear export signal receptor activity
EggNOG OGsCOG5101@1,KOG2020@2759
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-12_004630.2
COG Functional cat.UY
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03009,ko03016,ko03019,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size182
Cds size174
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10057.94.1prot_Ecto-sp9_F_contig10057.94.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10057 3312..4128 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928197.9696257-CDS-Ecto-sp9_F_contig10057:3311..34131622928197.9696257-CDS-Ecto-sp9_F_contig10057:3311..3413Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10057 3312..3413 -
1692277791.296559-CDS-Ecto-sp9_F_contig10057:3311..34131692277791.296559-CDS-Ecto-sp9_F_contig10057:3311..3413Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10057 3312..3413 -
1622928197.9812672-CDS-Ecto-sp9_F_contig10057:4056..41281622928197.9812672-CDS-Ecto-sp9_F_contig10057:4056..4128Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10057 4057..4128 -
1692277791.3874547-CDS-Ecto-sp9_F_contig10057:4056..41281692277791.3874547-CDS-Ecto-sp9_F_contig10057:4056..4128Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10057 4057..4128 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928197.9932365-UTR-Ecto-sp9_F_contig10057:4128..41341622928197.9932365-UTR-Ecto-sp9_F_contig10057:4128..4134Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10057 4129..4134 -
1692277791.3986654-UTR-Ecto-sp9_F_contig10057:4128..41341692277791.3986654-UTR-Ecto-sp9_F_contig10057:4128..4134Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10057 4129..4134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10057.94.1

>prot_Ecto-sp9_F_contig10057.94.1 ID=prot_Ecto-sp9_F_contig10057.94.1|Name=mRNA_Ecto-sp9_F_contig10057.94.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=58bp
MKSHLGMLETPETQPVLLAGMEYLVAISEVPDDEVFKICLEFYHHFSSDL
YQASATRH
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mRNA from alignment at Ecto-sp9_F_contig10057:3312..4134-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10057.94.1 ID=mRNA_Ecto-sp9_F_contig10057.94.1|Name=mRNA_Ecto-sp9_F_contig10057.94.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=823bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10057:3312..4134- (Ectocarpus species9 EcSCA_722f female)
GTGTTTATGAAGTCGCACCTGGGGATGCTCGAGACCCCGGAGACGCAGCC
GGTGCTGTTGGCGGGGATGGAATATTTGGTGAGATATGCATACCATGTGC
AAGTTCTATAATACTTGTAGTGCTATTCCAACCAGTAGCCGTTCACAGTT
TTTTTTTTTGTTAGTCAAATATGTTGAATAAAGCGTGCAATCGGGGGAGT
TGGGTTAGGGTTAGGGATACGGTCTGCGTACCCCCTCCCTTCCATTCCTC
AAGAACTCAATTTCTCGCACCGGCGGTACATTCTAACATAACACTACTAG
CGGCGAATTGTTCCTAGTATTGTGACGGCGAAAGCAGTCGTACGAGATTG
GTCATTGTTAATGGCGACACACGGAGATGGGAGCGGTTCATTGTCATTTC
CCTGGTCGATTCATTTTTGGTTTTGTATGTGTTTGTTTCTTGTGTCACCG
TGGTTCTTGTCGCCTTGCACGTTTTTTCATTTATCACGCGCGTATCGGAG
TTTTTGGTTGTTTGAAGTCGCAATTAATGTGGTAAATGGGTAAGATCAGC
TCGATGTCGGACATTTTTTTTTTCTAGTTCTTCGTGTGTGATTCTCGGGC
GAAAAATGACGGGTTATCCACGTTAATAATTTTGCCGTTGTTGGTGTGAG
ATGGTAAGGAGTATCGTTGGAAGTTTGCCGCTGATGATGTGGTGGCGGCT
GTGCATGTTTTTTCAACGCAGGTGGCTATCTCGGAGGTCCCCGACGACGA
GGTGTTCAAGATTTGTCTCGAGTTCTACCACCACTTTAGCTCGGACCTTT
ACCAGGCAAGCGCAACCAGACAT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10057:3312..4134-

>mRNA_Ecto-sp9_F_contig10057.94.1 ID=mRNA_Ecto-sp9_F_contig10057.94.1|Name=mRNA_Ecto-sp9_F_contig10057.94.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10057:3312..4134- (Ectocarpus species9 EcSCA_722f female)
ATGAAGTCGCACCTGGGGATGCTCGAGACCCCGGAGACGCAGCCGGTGCT
GTTGGCGGGGATGGAATATTTGATGAAGTCGCACCTGGGGATGCTCGAGA
CCCCGGAGACGCAGCCGGTGCTGTTGGCGGGGATGGAATATTTGGTGGCT
ATCTCGGAGGTCCCCGACGACGAGGTGTTCAAGATTTGTCTCGAGTTCTA
CCACCACTTTAGCTCGGACCTTTACCAGGCAAGCGCAACCAGACATGTGG
CTATCTCGGAGGTCCCCGACGACGAGGTGTTCAAGATTTGTCTCGAGTTC
TACCACCACTTTAGCTCGGACCTTTACCAGGCAAGCGCAACCAGACAT
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