mRNA_Ecto-sp9_F_contig10054.92.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10054.92.1
Unique NamemRNA_Ecto-sp9_F_contig10054.92.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10054.92.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP96_9PHAE)

HSP 1 Score: 395 bits (1016), Expect = 2.880e-126
Identity = 194/196 (98.98%), Postives = 195/196 (99.49%), Query Frame = 1 
Query:   43 QRAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFGDVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLGHHLLAGNELHPIMDNFGKFESNGYNAAAAM 630
            +RAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFGDVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPL HHLLAGNELHPIMDNFGKFESNGYNAAAAM
Sbjct:  450 ERAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFGDVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLEHHLLAGNELHPIMDNFGKFESNGYNAAAAM 645
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BLAST of mRNA_Ecto-sp9_F_contig10054.92.1 vs.
Match: DEAD (box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJL2_ECTSI)

HSP 1 Score: 393 bits (1009), Expect = 2.900e-123
Identity = 193/196 (98.47%), Postives = 195/196 (99.49%), Query Frame = 1 
Query:   43 QRAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFGDVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLGHHLLAGNELHPIMDNFGKFESNGYNAAAAM 630
            +RAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFGDVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPL H+LLAGNELHPIMDNFGKFESNGYNAAAAM
Sbjct:  605 ERAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFGDVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLEHNLLAGNELHPIMDNFGKFESNGYNAAAAM 800
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BLAST of mRNA_Ecto-sp9_F_contig10054.92.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZN6_9STRA)

HSP 1 Score: 318 bits (814), Expect = 3.220e-107
Identity = 154/179 (86.03%), Postives = 166/179 (92.74%), Query Frame = 1 
Query:   43 QRAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFGD-VGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLGHHLLAGNELHPI 576
            +R ECVFV+AHTSAGKTVVAEYAIA+A  HMTRAIYTSPIKALSNQKYRDFK RFGD VGLITGDVSINPEASCLIMTTEILRSMLYRGAD++RDIEWVIFDEVHY+ND+ERGVVWEEVIIMLPEHA MIFLSATTPNT+EF DWIGRTK+KPVHVITT YRPVPL H + AG E+H +
Sbjct:   54 ERRECVFVAAHTSAGKTVVAEYAIALAAAHMTRAIYTSPIKALSNQKYRDFKKRFGDDVGLITGDVSINPEASCLIMTTEILRSMLYRGADIVRDIEWVIFDEVHYINDTERGVVWEEVIIMLPEHAGMIFLSATTPNTIEFSDWIGRTKKKPVHVITTDYRPVPLQHFIYAGGEMHKV 232
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BLAST of mRNA_Ecto-sp9_F_contig10054.92.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WTP8_9STRA)

HSP 1 Score: 323 bits (827), Expect = 8.280e-99
Identity = 154/197 (78.17%), Postives = 177/197 (89.85%), Query Frame = 1 
Query:   37 HCQRAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFG--DVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLGHHLLAGNELHPIMDNFGKFESNGYNAA 621
            H +  ECVF++AHTSAGKTVVAEYAIAM+Q+HMTR +YTSPIKALSNQKYRDF+T+FG  +VGLITGDVSINPEASCL+MTTEILRSMLYRGAD+IRDIEWVIFDE+HY+NDSERGVVWEEVIIMLPEH +M+FLSATTPNT EF DWIGRTK+K +HVI+TT RPVPLGHHL AG E+ PI+DN  +F +N +  A
Sbjct:  399 HLENHECVFIAAHTSAGKTVVAEYAIAMSQKHMTRTVYTSPIKALSNQKYRDFRTKFGVDNVGLITGDVSINPEASCLVMTTEILRSMLYRGADVIRDIEWVIFDEIHYLNDSERGVVWEEVIIMLPEHVSMVFLSATTPNTFEFSDWIGRTKQKKIHVISTTKRPVPLGHHLYAGGEIIPIVDNSNQFLTNNHAKA 595
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BLAST of mRNA_Ecto-sp9_F_contig10054.92.1 vs.
Match: DEAD/DEAH (box RNA helicase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZLM2_9STRA)

HSP 1 Score: 318 bits (815), Expect = 4.590e-97
Identity = 152/197 (77.16%), Postives = 176/197 (89.34%), Query Frame = 1 
Query:   37 HCQRAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFG--DVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLGHHLLAGNELHPIMDNFGKFESNGYNAA 621
            H +  +CVF++AHTSAGKTVVAEYAIAM+Q+HMTR IYTSPIKALSNQKYRDF+T+FG  +VGLITGDVSINP+ASCL+MTTEILRSMLYRGAD+IRDIEWVIFDE+HY+NDSERGVVWEEVIIMLPEH +M+FLSATTPNT EF DWIGRTK+K +HVI+T  RP+PL HHL AG E+ P+MD  G+F S  Y+AA
Sbjct:  408 HLENHDCVFIAAHTSAGKTVVAEYAIAMSQKHMTRTIYTSPIKALSNQKYRDFRTKFGVDNVGLITGDVSINPQASCLVMTTEILRSMLYRGADVIRDIEWVIFDEIHYLNDSERGVVWEEVIIMLPEHVSMVFLSATTPNTFEFSDWIGRTKQKKIHVISTHKRPIPLSHHLYAGGEVLPVMDPQGQFLSANYSAA 604
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BLAST of mRNA_Ecto-sp9_F_contig10054.92.1 vs.
Match: Uncharacterized (protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T8M6_9STRA)

HSP 1 Score: 317 bits (813), Expect = 9.190e-97
Identity = 152/194 (78.35%), Postives = 174/194 (89.69%), Query Frame = 1 
Query:   37 HCQRAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFG--DVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLGHHLLAGNELHPIMDNFGKFESNGY 612
            H +  ECVF++AHTSAGKTVVAEYAIAM+Q+HMTR IYTSPIKALSNQKYRDF+T+FG  +VGLITGDVSINPEASCL+MTTEILRSMLYRGAD+IRDIEWV+FDE+HY+NDSERGVVWEEVIIMLPEH +M+FLSATTPNT EF DWIGRTK+K +HVI+T  RPVPLGHHL AG E+ PI+D   +F SN +
Sbjct:  407 HLENHECVFIAAHTSAGKTVVAEYAIAMSQKHMTRTIYTSPIKALSNQKYRDFRTKFGQDNVGLITGDVSINPEASCLVMTTEILRSMLYRGADVIRDIEWVVFDEIHYLNDSERGVVWEEVIIMLPEHVSMVFLSATTPNTFEFSDWIGRTKQKKIHVISTFKRPVPLGHHLYAGGEIIPIVDANNQFLSNSH 600
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BLAST of mRNA_Ecto-sp9_F_contig10054.92.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TLR1_THAOC)

HSP 1 Score: 317 bits (812), Expect = 2.440e-96
Identity = 153/195 (78.46%), Postives = 174/195 (89.23%), Query Frame = 1 
Query:   43 QRAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFGD-VGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLGHHLLAGNELHPIMDNFGKFESNGYNAAA 624
            +R+ECVF++AHTSAGKTV AEYAIA+A +H TRAIYTSPIKALSNQKYRDFK++FGD VGLITGD+ I  + SCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHY+NDSERGVVWEEVIIMLPE+ N+IFLSATTPNT+EF +WIGRTKRKPVHVI T YRPVPL H+L AG +LH I++  G F++ GY AAA
Sbjct:  424 ERSECVFLAAHTSAGKTVSAEYAIALAMKHCTRAIYTSPIKALSNQKYRDFKSKFGDDVGLITGDMQIGADGSCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYINDSERGVVWEEVIIMLPEYVNLIFLSATTPNTIEFSEWIGRTKRKPVHVIRTNYRPVPLSHNLWAGGKLHKILEGKGAFDTKGYTAAA 618
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BLAST of mRNA_Ecto-sp9_F_contig10054.92.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JTK5_9STRA)

HSP 1 Score: 312 bits (799), Expect = 4.610e-96
Identity = 151/194 (77.84%), Postives = 169/194 (87.11%), Query Frame = 1 
Query:   43 QRAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFGD-VGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLGHHLLAGNELHPIMDNFGKFESNGYNAA 621
            +R ECVFV+AHTSAGKTV AEYAIA+A++H TRAIYTSPIKALSNQKYRDF+ +FGD VGLITGD+ I  ++SCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHY+NDSERGVVWEEVIIMLP++ N+IFLSATTPNT+EF DWIGRTKRKPVHVI T YRPVPL HHL AG +LH +M+    F   GY  A
Sbjct:   41 ERGECVFVAAHTSAGKTVCAEYAIALARKHCTRAIYTSPIKALSNQKYRDFRDKFGDDVGLITGDLQIGADSSCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYINDSERGVVWEEVIIMLPDYVNLIFLSATTPNTIEFSDWIGRTKRKPVHVIRTDYRPVPLSHHLYAGQKLHKVMEGKSGFLEKGYKDA 234
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BLAST of mRNA_Ecto-sp9_F_contig10054.92.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KL30_9STRA)

HSP 1 Score: 315 bits (806), Expect = 2.030e-95
Identity = 150/195 (76.92%), Postives = 175/195 (89.74%), Query Frame = 1 
Query:   43 QRAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFG-DVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLGHHLLAGNELHPIMDNFGKFESNGYNAAA 624
            ++ +CVF++AHTSAGKTV AEYA+A+A++H TRAIYTSPIKALSNQKYRDF+++FG DVGLITGD+ I  + SCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHY+NDSERGVVWEEVIIMLPE+ NMIFLSATTPNT+EF +WIGRTKRKPVHVI T YRPVPL HHL AG+++H IM+    F+S GY+AA+
Sbjct:  462 EKRQCVFLAAHTSAGKTVCAEYAVALAKRHCTRAIYTSPIKALSNQKYRDFRSKFGEDVGLITGDMQIGADGSCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYINDSERGVVWEEVIIMLPEYVNMIFLSATTPNTIEFSEWIGRTKRKPVHVIRTNYRPVPLSHHLWAGHKMHKIMEGKQGFDSKGYSAAS 656
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10054.92.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BS27_THAPS)

HSP 1 Score: 308 bits (788), Expect = 2.930e-95
Identity = 149/195 (76.41%), Postives = 170/195 (87.18%), Query Frame = 1 
Query:   43 QRAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFGD-VGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLGHHLLAGNELHPIMDNFGKFESNGYNAAA 624
            +R+ECVF++AHTSAGKTV AEYAIA+A +H TRAIYTSPIKALSNQKYRDF+ +FGD VGLITGD+ I  + SCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHY+NDSERGVVWEEVIIMLP++ N+IFLSATTPNT+EF +WIGRTKRKPVHVI T YRPVPL H+L AG +LH +M+    F   GY+ AA
Sbjct:   29 ERSECVFLAAHTSAGKTVCAEYAIALAMKHCTRAIYTSPIKALSNQKYRDFRNKFGDDVGLITGDMQIGADGSCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYINDSERGVVWEEVIIMLPDYVNLIFLSATTPNTIEFSEWIGRTKRKPVHVIRTNYRPVPLSHNLWAGMKLHKLMEGREGFNPKGYSEAA 223
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10054.92.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.880e-12698.98protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
DEAD2.900e-12398.47box helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
P-loop3.220e-10786.03containing nucleoside triphosphate hydrolase prote... [more]
Uncharacterized8.280e-9978.17protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
DEAD/DEAH4.590e-9777.16box RNA helicase n=1 Tax=Achlya hypogyna TaxID=120... [more]
Uncharacterized9.190e-9778.35protein n=3 Tax=Aphanomyces invadans TaxID=157072 ... [more]
Uncharacterized2.440e-9678.46protein n=1 Tax=Thalassiosira oceanica TaxID=15974... [more]
Hypothetical4.610e-9677.84protein n=1 Tax=Odontella aurita TaxID=265563 RepI... [more]
Hypothetical2.030e-9576.92protein n=1 Tax=Skeletonema marinoi TaxID=267567 R... [more]
Uncharacterized2.930e-9576.41protein (Fragment) n=1 Tax=Thalassiosira pseudonan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10054contigEcto-sp9_F_contig10054:730..3192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score392.1
Seed ortholog evalue1.9e-106
Seed eggNOG ortholog2880.D7FJL2
Preferred nameSKIV2L
KEGG koko:K12599
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0015672,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019439,GO:0023052,GO:0030001,GO:0030968,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034427,GO:0034620,GO:0034641,GO:0034655,GO:0034976,GO:0035864,GO:0035966,GO:0035967,GO:0040029,GO:0042221,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055087,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0070478,GO:0070481,GO:0070887,GO:0071310,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay
EggNOG OGsCOG4581@1,KOG0947@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Hectar predicted targeting categoryother localisation
Exons5
Model size729
Cds size729
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10054.92.1prot_Ecto-sp9_F_contig10054.92.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10054 730..3192 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928197.8243706-CDS-Ecto-sp9_F_contig10054:729..9271622928197.8243706-CDS-Ecto-sp9_F_contig10054:729..927Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10054 730..927 +
1692277791.1976922-CDS-Ecto-sp9_F_contig10054:729..9271692277791.1976922-CDS-Ecto-sp9_F_contig10054:729..927Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10054 730..927 +
1622928197.8406465-CDS-Ecto-sp9_F_contig10054:1430..15801622928197.8406465-CDS-Ecto-sp9_F_contig10054:1430..1580Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10054 1431..1580 +
1692277791.2071977-CDS-Ecto-sp9_F_contig10054:1430..15801692277791.2071977-CDS-Ecto-sp9_F_contig10054:1430..1580Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10054 1431..1580 +
1622928197.8524766-CDS-Ecto-sp9_F_contig10054:2017..21671622928197.8524766-CDS-Ecto-sp9_F_contig10054:2017..2167Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10054 2018..2167 +
1692277791.221548-CDS-Ecto-sp9_F_contig10054:2017..21671692277791.221548-CDS-Ecto-sp9_F_contig10054:2017..2167Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10054 2018..2167 +
1622928197.8649533-CDS-Ecto-sp9_F_contig10054:2433..25081622928197.8649533-CDS-Ecto-sp9_F_contig10054:2433..2508Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10054 2434..2508 +
1692277791.229334-CDS-Ecto-sp9_F_contig10054:2433..25081692277791.229334-CDS-Ecto-sp9_F_contig10054:2433..2508Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10054 2434..2508 +
1622928197.875397-CDS-Ecto-sp9_F_contig10054:3036..31921622928197.875397-CDS-Ecto-sp9_F_contig10054:3036..3192Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10054 3037..3192 +
1692277791.2456563-CDS-Ecto-sp9_F_contig10054:3036..31921692277791.2456563-CDS-Ecto-sp9_F_contig10054:3036..3192Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10054 3037..3192 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10054.92.1

>prot_Ecto-sp9_F_contig10054.92.1 ID=prot_Ecto-sp9_F_contig10054.92.1|Name=mRNA_Ecto-sp9_F_contig10054.92.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=243bp
FAAVPIASNYRYHCQRAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIY
TSPIKALSNQKYRDFKTRFGDVGLITGDVSINPEASCLIMTTEILRSMLY
RGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTP
NTVEFCDWIGRTKRKPVHVITTTYRPVPLGHHLLAGNELHPIMDNFGKFE
SNGYNAAAAMLMSKEDKKAAAGRGGQRGGGGRGGRGGGRGGGG
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mRNA from alignment at Ecto-sp9_F_contig10054:730..3192+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10054.92.1 ID=mRNA_Ecto-sp9_F_contig10054.92.1|Name=mRNA_Ecto-sp9_F_contig10054.92.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2463bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10054:730..3192+ (Ectocarpus species9 EcSCA_722f female)
TTTGCGGCCGTGCCGATTGCATCCAATTATCGTTATCACTGCCAGCGAGC
GGAGTGCGTGTTTGTGTCGGCCCACACCTCGGCGGGAAAGACGGTCGTGG
CGGAGTACGCCATTGCCATGGCGCAGCAGCACATGACCCGAGCCATCTAC
ACCAGCCCAATCAAGGCCCTCTCCAACCAGAAGTACAGAGACTTCAAGGT
TGGTGGCTCTTTTGTTTGAGGCTTGGGTGAAGGGCGGGGGGGAGGGTGAC
CGACCGACGTCCTCGCTCACGAACTAACCAACGAAGACCTTGACACTCAC
GGTGTCTTGTTCGTTCTCGGGGGCCCTAGTGCGGTGGTGCAACTAAGCGG
GGAAGGATGGACGCGGTGTTTTTTCTGTACAGCGTTTGGTTTTTGTGCAC
GGGGAGCTTGTAGCTTTGCGGGTGTAGGGTTGGTTGAACGAGACGTGAGC
GATTCGTCCATCGGTATTCGTGTGCGGTACCAAACGGGCTGCTGTTTGGT
AGGACCGTTTTGGTACGGTAGGGTCGTACCGTCCTTTCGTCCTATTTAAA
TTGTTTCTCAACCAGCTTCCTCTTAGGCATGTTAGCCCCGGTTCGGGGTT
TTGTTCGCTTCTCGCAAGACTTACTTCCCTTTTGCTTGAGAATATCTTTT
ATCGTATTATCTTTAATTGTGTGTTTTATTCCCTTGGACTGGACTGTCAA
GACTCGGTTCGGAGACGTGGGTCTCATCACGGGAGACGTGTCGATCAACC
CAGAGGCTTCCTGCCTCATCATGACGACCGAGATTCTCCGGTCGATGCTC
TACAGGGGGGCCGACCTCATTCGGGATATCGAGTGGGTTATCTTCGACGA
GGTACAGCAGTACGCGCTGGCTGGCTGGTTGTTGGTTAAATAAGCACTCT
GCACCACAGCCTGTGGTTGTAGGAACGGAGCGCACGTCGTGCGTTTGTTT
TGTTAACTCGTTCCGCCACCAACGGCCGGTAGGTTGTGTGCCATCGTAGC
AGCTTGTGTGTGTACACACACACAGTCAGTCGTTATTCTGGACCTTGTTA
CCTTCCTATTTGGCGGTTCTGGTCTGGTCTGGTGTACTGGATGGTGAGAT
TGGTATCTGCCTTCTCCACGATAGTACTGCTGTGTGTGTTGGAGGTTGTT
ACGATCTTCGGAGGAATCTTGTTCGCCCAAATGGTGGTCTCCATTGTCGC
TGGTCATACGGCCGTGTCACGTACCACCTCACTCTGTGCAGCTGCTGCTG
TGCTGTGTCGTCGATGATGTCGTGTAACCTACCCGAAGGTGCACTACGTT
AACGACTCGGAGAGAGGCGTGGTGTGGGAGGAGGTGATCATCATGCTGCC
GGAGCACGCCAACATGATCTTCCTCTCGGCTACGACTCCCAACACCGTGG
AATTCTGCGACTGGATAGGCCGCACCAAGCGCAAGCCGGTGAGAACCTTG
GAACGTGATGCATGACATACCCGTCGAACTCCAGCTTGCAGCAAGAGCAA
ATTTTATTTATGAGCGGTGCGTGGACCGAGTGCAGGCTACACACCTATCG
TAGCAGGTGTTCGCTGGCCTCTTACAACTTATTGTTACATAGTCGGCGAC
GCTGATTGGTTCTGCGTGCCCGCCTGTGTCGGAATGCGTCATGACTCAGC
TATGTAACACGTGCGTGTCTGTGTGTGTTTGTGCTTGGTTATCCAACGCT
GTAGGTCCACGTGATCACGACAACGTATCGACCAGTTCCGCTGGGGCACC
ACCTCTTGGCGGGGAACGAGCTGCACCCGGTGAGAGCAACCTTGACGTTG
CCACCCCCCACCCACCACTAAGGGTTGTTTTTCCCACCGCAAGGGTGCTG
TATCCAATAGGTGGCCGTCAAGGCATTCCGGTAGGAGCCAAACCTTTGTT
GGTCCACTGGAATGTCTGCTGCGCTTGCACCACGTAATTCACAACGTTGG
ACCTTCGGGCGGGCAGAGCTGCCCAGCTAGCTAGGTTTCGATAAGTGTGT
AGTGTGACTTGCGTATTTTCGGCGAGTGGGAGGAAAGGGTGGATTATATT
GCGCTGGCGGTTCGCGAAGGGCTTCTTTGTCTGGTTGGATCGATGTGCTC
ACTGCGTGGGTCTGGCGGCTTCCCCTGCCTATATTTTGCTGCGACAGTAA
CGAACAATGATAATGCTGTTTCGACAACAGTCACGTTGTGTTGCGCAGCT
TGTCGGTCTGCCTGAAAGCGCGTGCTTTAACAATTAAAGGATAAGGATTG
TCTAAGTGTGTTTACCGGGTGCCACCACCCCCCGTCACTCATACACCCTC
CTCTTAGATCATGGACAACTTTGGCAAGTTCGAGTCGAACGGGTACAACG
CAGCCGCCGCGATGCTAATGAGCAAAGAGGACAAGAAGGCGGCAGCGGGA
CGGGGAGGCCAACGGGGAGGGGGGGGGCGGGGGGGGAGGGGCGGAGGCAG
GGGCGGAGGGGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10054:730..3192+

>mRNA_Ecto-sp9_F_contig10054.92.1 ID=mRNA_Ecto-sp9_F_contig10054.92.1|Name=mRNA_Ecto-sp9_F_contig10054.92.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1458bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10054:730..3192+ (Ectocarpus species9 EcSCA_722f female)
TTTGCGGCCGTGCCGATTGCATCCAATTATCGTTATCACTGCCAGCGAGC
GGAGTGCGTGTTTGTGTCGGCCCACACCTCGGCGGGAAAGACGGTCGTGG
CGGAGTACGCCATTGCCATGGCGCAGCAGCACATGACCCGAGCCATCTAC
ACCAGCCCAATCAAGGCCCTCTCCAACCAGAAGTACAGAGACTTCAAGTT
TGCGGCCGTGCCGATTGCATCCAATTATCGTTATCACTGCCAGCGAGCGG
AGTGCGTGTTTGTGTCGGCCCACACCTCGGCGGGAAAGACGGTCGTGGCG
GAGTACGCCATTGCCATGGCGCAGCAGCACATGACCCGAGCCATCTACAC
CAGCCCAATCAAGGCCCTCTCCAACCAGAAGTACAGAGACTTCAAGACTC
GGTTCGGAGACGTGGGTCTCATCACGGGAGACGTGTCGATCAACCCAGAG
GCTTCCTGCCTCATCATGACGACCGAGATTCTCCGGTCGATGCTCTACAG
GGGGGCCGACCTCATTCGGGATATCGAGTGGGTTATCTTCGACGAGACTC
GGTTCGGAGACGTGGGTCTCATCACGGGAGACGTGTCGATCAACCCAGAG
GCTTCCTGCCTCATCATGACGACCGAGATTCTCCGGTCGATGCTCTACAG
GGGGGCCGACCTCATTCGGGATATCGAGTGGGTTATCTTCGACGAGGTGC
ACTACGTTAACGACTCGGAGAGAGGCGTGGTGTGGGAGGAGGTGATCATC
ATGCTGCCGGAGCACGCCAACATGATCTTCCTCTCGGCTACGACTCCCAA
CACCGTGGAATTCTGCGACTGGATAGGCCGCACCAAGCGCAAGCCGGTGC
ACTACGTTAACGACTCGGAGAGAGGCGTGGTGTGGGAGGAGGTGATCATC
ATGCTGCCGGAGCACGCCAACATGATCTTCCTCTCGGCTACGACTCCCAA
CACCGTGGAATTCTGCGACTGGATAGGCCGCACCAAGCGCAAGCCGGTCC
ACGTGATCACGACAACGTATCGACCAGTTCCGCTGGGGCACCACCTCTTG
GCGGGGAACGAGCTGCACCCGGTCCACGTGATCACGACAACGTATCGACC
AGTTCCGCTGGGGCACCACCTCTTGGCGGGGAACGAGCTGCACCCGATCA
TGGACAACTTTGGCAAGTTCGAGTCGAACGGGTACAACGCAGCCGCCGCG
ATGCTAATGAGCAAAGAGGACAAGAAGGCGGCAGCGGGACGGGGAGGCCA
ACGGGGAGGGGGGGGGCGGGGGGGGAGGGGCGGAGGCAGGGGCGGAGGGG
GCATCATGGACAACTTTGGCAAGTTCGAGTCGAACGGGTACAACGCAGCC
GCCGCGATGCTAATGAGCAAAGAGGACAAGAAGGCGGCAGCGGGACGGGG
AGGCCAACGGGGAGGGGGGGGGCGGGGGGGGAGGGGCGGAGGCAGGGGCG
GAGGGGGC
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