mRNA_Ecto-sp9_F_contig10053.91.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10053.91.1
Unique NamemRNA_Ecto-sp9_F_contig10053.91.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10053.91.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10053contigEcto-sp9_F_contig10053:4..390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size389
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928197.781771-CDS-Ecto-sp9_F_contig10053:3..3901622928197.781771-CDS-Ecto-sp9_F_contig10053:3..390Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10053 4..390 +
1692277791.182865-CDS-Ecto-sp9_F_contig10053:3..3901692277791.182865-CDS-Ecto-sp9_F_contig10053:3..390Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10053 4..390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10053.91.1prot_Ecto-sp9_F_contig10053.91.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10053 4..390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10053.91.1

>prot_Ecto-sp9_F_contig10053.91.1 ID=prot_Ecto-sp9_F_contig10053.91.1|Name=mRNA_Ecto-sp9_F_contig10053.91.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=129bp
SSRWWPIWPTSTLARPSRGWWRRWLTPWQTSRWCQAPSSRRNRTRHLRCS
GAFQGLDVAVHVKRSCGNIQMLLEPGENWEAGVSRIAGGWLAQAWPETAV
VPEGGSVHDQLRAKASAGLQYSRNMVNEA
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mRNA from alignment at Ecto-sp9_F_contig10053:4..390+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10053.91.1 ID=mRNA_Ecto-sp9_F_contig10053.91.1|Name=mRNA_Ecto-sp9_F_contig10053.91.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=387bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10053:4..390+ (Ectocarpus species9 EcSCA_722f female)
TCCAGTCGCTGGTGGCCGATATGGCCAACCTCAACCTTAGCACGGCCCAG
CAGGGGGTGGTGGCGGCGCTGGTTGACGCCGTGGCAAACCTCAAGGTGGT
GTCAGGCGCCGAGCTCGAGGCGCAACAGGACAAGGCACTTACGTTGCTCC
GGAGCATTTCAGGGCCTGGACGTGGCAGTACACGTGAAAAGAAGCTGTGG
AAACATCCAGATGCTCTTGGAGCCTGGGGAAAATTGGGAGGCAGGAGTAA
GCCGAATCGCGGGCGGGTGGCTCGCACAAGCCTGGCCGGAGACGGCGGTA
GTCCCCGAAGGGGGATCTGTACATGACCAGTTGCGGGCGAAGGCTTCGGC
CGGGCTTCAGTATTCCCGCAACATGGTGAACGAGGCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10053:4..390+

>mRNA_Ecto-sp9_F_contig10053.91.1 ID=mRNA_Ecto-sp9_F_contig10053.91.1|Name=mRNA_Ecto-sp9_F_contig10053.91.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=774bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10053:4..390+ (Ectocarpus species9 EcSCA_722f female)
TCCAGTCGCTGGTGGCCGATATGGCCAACCTCAACCTTAGCACGGCCCAG
CAGGGGGTGGTGGCGGCGCTGGTTGACGCCGTGGCAAACCTCAAGGTGGT
GTCAGGCGCCGAGCTCGAGGCGCAACAGGACAAGGCACTTACGTTGCTCC
GGAGCATTTCAGGGCCTGGACGTGGCAGTACACGTGAAAAGAAGCTGTGG
AAACATCCAGATGCTCTTGGAGCCTGGGGAAAATTGGGAGGCAGGAGTAA
GCCGAATCGCGGGCGGGTGGCTCGCACAAGCCTGGCCGGAGACGGCGGTA
GTCCCCGAAGGGGGATCTGTACATGACCAGTTGCGGGCGAAGGCTTCGGC
CGGGCTTCAGTATTCCCGCAACATGGTGAACGAGGCGTCCAGTCGCTGGT
GGCCGATATGGCCAACCTCAACCTTAGCACGGCCCAGCAGGGGGTGGTGG
CGGCGCTGGTTGACGCCGTGGCAAACCTCAAGGTGGTGTCAGGCGCCGAG
CTCGAGGCGCAACAGGACAAGGCACTTACGTTGCTCCGGAGCATTTCAGG
GCCTGGACGTGGCAGTACACGTGAAAAGAAGCTGTGGAAACATCCAGATG
CTCTTGGAGCCTGGGGAAAATTGGGAGGCAGGAGTAAGCCGAATCGCGGG
CGGGTGGCTCGCACAAGCCTGGCCGGAGACGGCGGTAGTCCCCGAAGGGG
GATCTGTACATGACCAGTTGCGGGCGAAGGCTTCGGCCGGGCTTCAGTAT
TCCCGCAACATGGTGAACGAGGCG
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