mRNA_Ecto-sp9_F_contig100.59.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig100.59.1
Unique NamemRNA_Ecto-sp9_F_contig100.59.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig100.59.1 vs.
Match: FYVE-type (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEA9_ECTSI)

HSP 1 Score: 1007 bits (2604), Expect = 0.000e+0
Identity = 527/554 (95.13%), Postives = 532/554 (96.03%), Query Frame = 3
Query:   60 MMTAAFGDESASSMSLLPPTEGSGGDTGEDVDGYPREAARLLEEENPHHQPSHNGQLREQQDVPGRQLMEDRWPSGQYSSLTTVPPGGASGGSGGNPNVAWQDPNTTTSGSDGDSDGMVTPTPGQGQAGLAPLDEQPPPDPFAMERPPIVNGXXXX--AVGGEIRAKPPVVPRPARREWNLTTTKPSPKLSPTAVGATGAANGHISSEGKGVGVAGVGGGSVAGGGGVGLKPPKWLPDEDTASCSGCGRDFDWARRRHHCRLCGGIFCYACSQFRALLPRSFGSRDPQRLCQPCNARVAPLQEMLAAESVSNAVKENDVERGTVASYLNRPIVFTLGAEVRKAAYTIHNFSKEGMIQDQSIPQELLSRAKGLAFLTVIKGGFIVAGRVGTGLVISKTDEGVWSAPSAIATLGMGWGALIGGEITDFVLVLNTDAALEAFSGRGQVSIGAELSVAVGPVGRTGAGNVSVAAEGVAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVRELLSGSVAPPPAARPLYEALDNRGPAADQQRLLSQGFRVG 1715
            MMTAAFGDESASSMSLLPP EGSGGDTGEDVDG PREAARLLEEENPHHQPS+NGQ  EQQDVPGRQLMEDRWPSGQYSSLTTVPPGGASGGS   PNVAWQDPNTTTS  +GDSDGMVTP  GQGQAGLAPLDEQPPPDPFAMERPPI NG      AVGGEIRAKPPV PRPARREWNLTTTKPSPKLS TAVGATGAANGHISS+GKGVGVAGVGGGSVAGGGGVGLKPPKWLPDEDT+SCSGCGRDFDWARRRHHCRLCGGIFCYACSQFRALLPRSFGSRDPQRLCQPCNARVAPLQEMLA ESVSNAVKENDVERGTVASYLNRPIVFTLGAEVRKAAYTIHNFSKEGMIQDQSIPQELLSRAKGLAFLTVIKGGFIVAGRVGTGLVISKTDEGVWSAPSAIATLGMGWGALIGGEITDFVLVLNTDAALEAFSGRGQVSIGAELSVAVGPVGRTGAGNVSVAAEGVAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVR+LLSGSVAPPPAARPLYEALDNRGP ADQQRLLSQGFRVG
Sbjct:    1 MMTAAFGDESASSMSLLPPIEGSGGDTGEDVDGNPREAARLLEEENPHHQPSYNGQRHEQQDVPGRQLMEDRWPSGQYSSLTTVPPGGASGGS---PNVAWQDPNTTTSAGEGDSDGMVTP--GQGQAGLAPLDEQPPPDPFAMERPPIANGGRGGGGAVGGEIRAKPPVAPRPARREWNLTTTKPSPKLSSTAVGATGAANGHISSDGKGVGVAGVGGGSVAGGGGVGLKPPKWLPDEDTSSCSGCGRDFDWARRRHHCRLCGGIFCYACSQFRALLPRSFGSRDPQRLCQPCNARVAPLQEMLA-ESVSNAVKENDVERGTVASYLNRPIVFTLGAEVRKAAYTIHNFSKEGMIQDQSIPQELLSRAKGLAFLTVIKGGFIVAGRVGTGLVISKTDEGVWSAPSAIATLGMGWGALIGGEITDFVLVLNTDAALEAFSGRGQVSIGAELSVAVGPVGRTGAGNVSVAAEGVAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVRDLLSGSVAPPPAARPLYEALDNRGPGADQQRLLSQGFRVG 548          
BLAST of mRNA_Ecto-sp9_F_contig100.59.1 vs.
Match: FYVE-type (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z286_9STRA)

HSP 1 Score: 358 bits (918), Expect = 4.720e-109
Identity = 190/355 (53.52%), Postives = 238/355 (67.04%), Query Frame = 3
Query:  741 LKPPKWLPDEDTASCSGCGRDFDWARRRHHCRLCGGIFCYACSQFRALLPRSFGSRDPQRLCQPCNARVAPLQEMLAAESVSNAVKENDV---ERGTVASYLNRPIVFTLGAEVRKAAYTIHNFSKEGMIQDQSIPQELLSRAKGLAFLTVIKGGFIVAGRVGTGLVISKT----------------DEGV------------------------------WSAPSAIATLGMGWGALIGGEITDFVLVLNTDAALEAFSGRGQVSIGAELSVAVGPVGRTGAGNVSVAAEG-VAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVRELLSGSVAPPPAARPLYEAL 1655
            + PP+W+PDED  +C  C + FDWARR+HHCR CGGIFC +CS++++LLPRSFG+RDPQR+C+ CNA +A LQE L A ++SNAVK N V   E+  ++ YLN+P+ FTLGAEVRKAAY++ NF + G++QD SIP ELL+RAKGLAF+TV+K G    G  GTGLVIS+                 D                                 WSAPSAI T+GMGWGA IG  +TD VLVL T+AA+EAF     VS+GA + VA GP+GR+GAG V+++ E  VA   SYSHSRGLFAG+SLEG VI +RPDVNR FYGR +  ++LL+G   PPPAA PLYEAL
Sbjct:   83 ITPPRWIPDEDVLACVKCNKAFDWARRKHHCRCCGGIFCASCSKYQSLLPRSFGTRDPQRVCKACNASLAHLQEHLQA-TLSNAVKANQVSKSEKPGLSPYLNKPLSFTLGAEVRKAAYSVLNFMRTGVVQDNSIPTELLARAKGLAFMTVLKAGCFWTGSFGTGLVISRLPAERCCHPSAASLSDGDSAAAPEQXXPLSVAAAAYGSSAQLMRRPPRRLEWSAPSAIGTVGMGWGAAIGANVTDVVLVLTTNAAVEAFCAT-NVSLGAGIGVAAGPIGRSGAGAVTISTESDVAPVLSYSHSRGLFAGISLEGAVIAARPDVNRAFYGRDIGAKQLLAGEAPPPPAAAPLYEAL 435          
BLAST of mRNA_Ecto-sp9_F_contig100.59.1 vs.
Match: FYVE-type (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJX3_9STRA)

HSP 1 Score: 349 bits (895), Expect = 1.740e-107
Identity = 179/311 (57.56%), Postives = 219/311 (70.42%), Query Frame = 3
Query:  735 VGLKPPKWLPDEDTASCSGCGRDFDWARRRHHCRLCGGIFCYACSQFRALLPRSFGSRDPQRLCQPCNARVAPLQEMLAAESVSNAVKENDVERGT---VASYLNRPIVFTLGAEVRKAAYTIHNFSKEGMIQDQSIPQELLSRAKGLAFLTVIKGGFIVAGRVGTGLVISKTDEGVWSAPSAIATLGMGWGALIGGEITDFVLVLNTDAALEAFSGRGQVSIGAELSVAVGPVGRTGAGNVSVAAEG-VAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVRELLSGSVAPPPAARPLYEAL 1655
             GL PP+W PD    +C  CGR FDWARR+HH               +ALLPRSFG+RDPQR+C  C   + PLQ  L   + SNAV+ N+V  G    ++ YLN+P+ FTLGAEVRKAAY++ NF + G++QD SIP ELL+ AKGLAF+TV+K G +  G  GTGLV        WSAPSAI T+GMGWGA IG  ITD VLVLNT AA+EAF G GQ+S+GA + +A GP+GR+GAG V++  +G VA   SYSHSRGLFAG+SLEG VI +RPDVNR FYG+ V+ ++LLSG V PPPAA PLYEAL
Sbjct:    4 AGLAPPRWTPDAQAVNCHNCGRLFDWARRKHHXXXXXXXXXXXXXXXQALLPRSFGTRDPQRVCDECKTTLEPLQADLI-NTFSNAVRANEVANGAKRGLSPYLNKPLSFTLGAEVRKAAYSVFNFMRAGVVQDSSIPTELLTCAKGLAFITVLKAGVVWVGNFGTGLVQCHLLSTEWSAPSAIGTIGMGWGACIGANITDVVLVLNTAAAVEAFCGAGQMSLGAGIGMAAGPIGRSGAGGVTIGTDGDVAPVLSYSHSRGLFAGISLEGAVIAARPDVNRAFYGKDVTAKQLLSGEVDPPPAAAPLYEAL 313          
BLAST of mRNA_Ecto-sp9_F_contig100.59.1 vs.
Match: Aste57867_8862 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KLR6_9STRA)

HSP 1 Score: 343 bits (881), Expect = 3.670e-104
Identity = 167/314 (53.18%), Postives = 222/314 (70.70%), Query Frame = 3
Query:  753 KWLPDEDTASCSGCGRDFDWARRRHHCRLCGGIFCYACSQFRALLPR------------SFGSRDPQRLCQPCNARVAPLQEMLAAESVSNAVKENDVERGTVASYLNRPIVFTLGAEVRKAAYTIHNFSKEGMIQDQSIPQELLSRAKGLAFLTVIKGGFIVAGRVGTGLVISKTDEGVWSAPSAIATLGMGWGALIGGEITDFVLVLNTDAALEAFSGRGQVSIGAELSVAVGPVGRTGAGNVSVAAEGVAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVRELLSGSVAPPPAARPLYEALD 1658
            +W+PDE+ + C  CG  FDW RR+HHCR CG +FC  C+  R+++              S  +  PQR+C+PC+  + P Q +L  E+ SNAV+ N +       +LN P  FTL  EVRKAAY++ NF  +G+I+DQSIP  LL+ A+G+AFLTV+K GF+V GR+GTGLV+SK  +G WSAPSAI T G+GWGA +GGE+TDFV++LNT AA++ F  +GQV++GAEL VA GP+GR  AG++     G+A  YSYSHS+GLF G+SLEG VIV+RPDVNR+FYGR ++  ELLSG   PP AA PLY+AL+
Sbjct:   35 RWIPDEEVSLCKSCGLLFDWVRRKHHCRYCGQVFCDLCTTHRSMIREDKILTAPTKRYLSVSAYSPQRVCEPCHNVLMPDQAILR-ETASNAVQPNSINEAGSKRFLNSPYSFTLREEVRKAAYSVKNFMLDGLIKDQSIPLPLLTNAQGIAFLTVLKVGFVVTGRLGTGLVLSKLADGSWSAPSAIGTAGIGWGAQVGGEVTDFVIILNTRAAVDTFCAQGQVNLGAELGVAAGPLGRVAAGSMEAGPGGIAPCYSYSHSKGLFIGISLEGSVIVARPDVNREFYGRDITAAELLSGQERPPVAAMPLYDALE 347          
BLAST of mRNA_Ecto-sp9_F_contig100.59.1 vs.
Match: FYVE-type (domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CDH3_SAPPC)

HSP 1 Score: 337 bits (863), Expect = 4.450e-102
Identity = 165/313 (52.72%), Postives = 222/313 (70.93%), Query Frame = 3
Query:  753 KWLPDEDTASCSGCGRDFDWARRRHHCRLCGGIFCYACSQFRALL--------PR----SFGSRDPQRLCQPCNARVAPLQEMLAAESVSNAVKENDVERGTVASYLNRPIVFTLGAEVRKAAYTIHNFSKEGMIQDQSIPQELLSRAKGLAFLTVIKGGFIVAGRVGTGLVISKTDEGVWSAPSAIATLGMGWGALIGGEITDFVLVLNTDAALEAFSGRGQVSIGAELSVAVGPVGRTGAGNVSVAAEGVAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVRELLSGSVAPPPAARPLYEAL 1655
            +W+PD + + C  CG  FDW RR+HHCR CG +FC  C+ FR+L+        P     S  + +PQR+C+PC   + P Q +L A + SNAV+ N +       +LN P  FTL  E+RKAAY++ NF  +G+I+DQSIP  LL+ AKG+AFLTV+K GF+V GRVGTGLVI+K  +G WSAPSAIAT G+GWGA IGG +TDFV++LNT +A++ F  +GQV++GAEL VA GP+GR  AG +     G+A  YSYSHS+GLF G+S+EG V+++RPDVN +FYG++V+  +LLSG   PP AA+PLY+AL
Sbjct:   23 RWIPDAEVSLCKACGLLFDWVRRKHHCRYCGHVFCDLCTTFRSLIRDDKILTSPEKRYLSVNAYNPQRVCEPCYTLLLPDQSLLCA-TASNAVQPNSISEAGSKRFLNSPYSFTLREEIRKAAYSVKNFMYDGVIKDQSIPLPLLTNAKGIAFLTVLKVGFVVTGRVGTGLVIAKLPDGSWSAPSAIATAGIGWGAQIGGGVTDFVIILNTRSAVDTFCAQGQVNMGAELGVAAGPLGRVAAGAMEAGPGGIAPCYSYSHSKGLFIGISVEGSVVLARPDVNLEFYGKEVTAADLLSGRERPPVAAQPLYDAL 334          
BLAST of mRNA_Ecto-sp9_F_contig100.59.1 vs.
Match: FYVE-type (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5S5_9STRA)

HSP 1 Score: 336 bits (861), Expect = 5.640e-102
Identity = 170/314 (54.14%), Postives = 219/314 (69.75%), Query Frame = 3
Query:  753 KWLPDEDTASCSGCGRDFDWARRRHHCRLCGGIFCYACSQFRALLPR------------SFGSRDPQRLCQPCNARVAPLQEMLAAESVSNAVKENDVERGTVASYLNRPIVFTLGAEVRKAAYTIHNFSKEGMIQDQSIPQELLSRAKGLAFLTVIKGGFIVAGRVGTGLVISKTDEGVWSAPSAIATLGMGWGALIGGEITDFVLVLNTDAALEAFSGRGQVSIGAELSVAVGPVGRTGAGNVSVAAE-GVAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVRELLSGSVAPPPAARPLYEAL 1655
            +W+PD + + C GC   FDW RR+HHCR CG +FC  C+  R+L+P             S  + +PQR+C  C   + P Q  L   ++SNAV+EN+++      +LN P  FTL  E+RKAAY++ NF  +G+I+DQSIP  LL+ AKG+AFLTVIK GF+  GRVGTGLVI++  +G WSAPSAIAT G+GWGA IGGEITDFV+VLNT  A++AF  +GQV++GAEL V+ GPVGR  AG V  +A+  VA  YSYSHS+GLF GLSLEG +I++RPD+NR FYGR V V ELL G   PP  A PLY+A+
Sbjct:   16 RWIPDAEVSLCFGCQLLFDWVRRKHHCRFCGHVFCDLCTPRRSLIPADQILANPERQYLSVNAHNPQRVCDDCFNALLPAQAELRG-TMSNAVQENELDEAGAKRFLNSPYSFTLREEIRKAAYSVKNFMYQGVIKDQSIPLPLLTHAKGIAFLTVIKVGFVFTGRVGTGLVIARLPDGRWSAPSAIATAGVGWGAQIGGEITDFVIVLNTKRAVDAFCSKGQVNLGAELGVSAGPVGRVAAGAVEASADLAVAPCYSYSHSKGLFVGLSLEGSMILARPDINRAFYGRDVQVAELLGGMEPPPVGATPLYDAI 328          
BLAST of mRNA_Ecto-sp9_F_contig100.59.1 vs.
Match: FYVE-type (domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z795_9STRA)

HSP 1 Score: 336 bits (862), Expect = 6.610e-102
Identity = 163/313 (52.08%), Postives = 220/313 (70.29%), Query Frame = 3
Query:  753 KWLPDEDTASCSGCGRDFDWARRRHHCRLCGGIFCYACSQFRALLPR------------SFGSRDPQRLCQPCNARVAPLQEMLAAESVSNAVKENDVERGTVASYLNRPIVFTLGAEVRKAAYTIHNFSKEGMIQDQSIPQELLSRAKGLAFLTVIKGGFIVAGRVGTGLVISKTDEGVWSAPSAIATLGMGWGALIGGEITDFVLVLNTDAALEAFSGRGQVSIGAELSVAVGPVGRTGAGNVSVAAEGVAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVRELLSGSVAPPPAARPLYEAL 1655
            +W+PD + + C  CG  FDW RR+HHCR CG +FC  C+ FR+L+              S  + +PQR+C+PC   + P Q +L  E+ SNAV+ N +       +LN P  FTL  E+RKAAY++ NF  +G+I+DQSIP  LL+ AKG+AFLTV+K GF+V GRVGTGLVI+K  +G WSAPSAIAT G+GWGA IGG +TDFV++LNT +A++ F  +GQV++GAEL VA GP+GR  AG +     G+A  YSYSHS+GLF G+S+EG ++V+RPDVN +FYG++V+  +LLSG    P AA+PLY+AL
Sbjct:   21 RWIPDAEVSLCKACGLLFDWVRRKHHCRYCGHVFCDLCTNFRSLIREDKILTSPEKRYLSVNAYNPQRVCEPCYTILLPDQSLLC-ETSSNAVQPNSITEAGSKRFLNSPYSFTLREEIRKAAYSVKNFMYDGLIKDQSIPLPLLTNAKGIAFLTVLKVGFVVTGRVGTGLVIAKLPDGTWSAPSAIATAGIGWGAQIGGGVTDFVIILNTRSAVDTFCAQGQVNMGAELGVAAGPLGRVAAGAMEAGPGGIAPCYSYSHSKGLFIGISIEGSIVVARPDVNMEFYGKEVTAAQLLSGQERRPVAAQPLYDAL 332          
BLAST of mRNA_Ecto-sp9_F_contig100.59.1 vs.
Match: Hypothetical (protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1LWE2_HETAK)

HSP 1 Score: 338 bits (868), Expect = 1.150e-101
Identity = 175/338 (51.78%), Postives = 240/338 (71.01%), Query Frame = 3
Query:  732 GVGLKPPKWLPDEDTASCSGCGRDFDWARRRHHCRLCGGIFCYACSQFRALLPRSFGSRDPQRLCQPCNARVAPLQEMLAAESVSNAVKENDVE-RGTVASYLNRPIVFTLGAEVRKAAYTIHNFSKE---------GMIQDQSIPQELLSRAKGLAFLTVIKGGFIVAGRVGTGLVISKTDEGVWSAPSAIATLGMGWGALIGGEITDFVLVLNTDAALEAFSGRGQVSIGAELSVAVGPVGRTGAGNVSVAAEGVAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVRELLSGSVAPPPAARPLYEALDNRGPAADQQRLLSQGFRVG 1715
            GVG  P +W+PDE+   C+ C   FDWA R+HHCR CG IFC +CS+ +ALLP+ F  RDP+R+C PC   + PLQ+ L A ++SN+++EN ++    +  +++ P   TLGA VRKAA+TI N +           G+++DQSIP E L RA+GLAFLTV K GF++AG+ GTGLV+++  +G W+APSAIAT+G+ WG LIGGEITD+V++LNT  A+EAFSGRGQV++GAEL  A+GPVGR   GN+++   GVA  Y+YSHS+GLF G+SLEG VI +R D+N+KFYG+ V    LL+G V  P AA+PLY+AL+    A   +  +++  RVG
Sbjct:  120 GVGALP-RWVPDEEVTHCTQCQVMFDWAVRKHHCRACGRIFCQSCSENKALLPKEFCDRDPKRVCDPCFRALQPLQDELVA-TMSNSIRENHIDPNSALERHVHNPFSTTLGACVRKAAHTILNMTDTHTTDHINGMGVVKDQSIPIEYLRRARGLAFLTVAKMGFVLAGKAGTGLVVARRPDGGWTAPSAIATVGVNWGLLIGGEITDYVILLNTQKAVEAFSGRGQVTLGAELGAALGPVGRNAGGNLALGDGGVAPTYTYSHSKGLFVGVSLEGTVIAARADMNQKFYGQPVLASNLLNGVVPNPRAAQPLYDALETACAAQAPRNAITE--RVG 453          
BLAST of mRNA_Ecto-sp9_F_contig100.59.1 vs.
Match: FYVE-type (domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UDI5_9STRA)

HSP 1 Score: 337 bits (863), Expect = 1.290e-101
Identity = 168/314 (53.50%), Postives = 219/314 (69.75%), Query Frame = 3
Query:  753 KWLPDEDTASCSGCGRDFDWARRRHHCRLCGGIFCYACSQFRALLPR------------SFGSRDPQRLCQPCNARVAPLQEMLAAESVSNAVKENDVERGTVASYLNRPIVFTLGAEVRKAAYTIHNFSKEGMIQDQSIPQELLSRAKGLAFLTVIKGGFIVAGRVGTGLVISKTDEGVWSAPSAIATLGMGWGALIGGEITDFVLVLNTDAALEAFSGRGQVSIGAELSVAVGPVGRTGAGNVSVAAEGVAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVRELLSGSVAPPPAARPLYEALD 1658
            +W+ D + + C  CG  FDW RR+HHCR CG +FC  C+  R+L+              S  +  PQR+C+PC+  + P Q +L  E+ SNAV+ N +       + N P  FTL  EVRKAAY+I NF  EG+I+DQSIP  LL+ A+G+AFLTV+K GF+V GR+GTGLV+SK  +G WSAPSAIAT G+GWGA +GGE+TDFV++LNT AA++ F  +GQV++GAEL VA GPVGR  AG V     G+A  YSYSHS+GLF G+SLEG VI++RPDVNR+FYG+ V+  ELL G   PP AA+PLY+AL+
Sbjct:   36 RWISDAEVSLCKSCGLLFDWVRRKHHCRYCGQVFCDDCTPHRSLIHEDKILISPNKRYLSVNAFSPQRVCKPCHHILLPDQAILR-ETASNAVQPNSINETGSKRFFNSPYSFTLREEVRKAAYSIKNFMLEGVIKDQSIPLPLLTNAQGIAFLTVLKVGFVVTGRLGTGLVLSKLPDGSWSAPSAIATAGIGWGAQVGGEVTDFVMILNTRAAVDTFCAQGQVNLGAELGVAAGPVGRVAAGAVEAGPGGIAPCYSYSHSKGLFIGISLEGSVIMARPDVNREFYGKDVTAAELLGGRERPPVAAQPLYDALE 348          
BLAST of mRNA_Ecto-sp9_F_contig100.59.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C966_PYTOL)

HSP 1 Score: 336 bits (861), Expect = 2.750e-101
Identity = 174/314 (55.41%), Postives = 220/314 (70.06%), Query Frame = 3
Query:  753 KWLPDEDTASCSGCGRDFDWARRRHHCRLCGGIFCYACSQFRALL---------PRSF---GSRDPQRLCQPCNARVAPLQEMLAAESVSNAVKENDVERGTVASYLNRPIVFTLGAEVRKAAYTIHNFSKEGMIQDQSIPQELLSRAKGLAFLTVIKGGFIVAGRVGTGLVISKTDEGVWSAPSAIATLGMGWGALIGGEITDFVLVLNTDAALEAFSGRGQVSIGAELSVAVGPVGRTGAGNVSVAAE-GVAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVRELLSGSVAPPPAARPLYEAL 1655
            +W+ D + + C GC   FDW RR+HHCR CG IFC  C+  R L+          R F    + +PQR+C  C   + P Q  L  ES SNAV  N +       +LN P  FTL  E+RKAAY++ NF  +G+I+DQSIP  LL++AKG+AFLTVIK GF++ GRVGTGLVISK  +G WSAPSAI T G+GWGA IGGE+TDFV++LNT  A++AF+ +GQV++GAEL VA GP+GRT AG+V  +A+  +A  YSYSHS+GLFAG+SLEG VI++RPD+NR FYGR+V   ELL G  APP AA PLYEAL
Sbjct:   37 RWVMDAEVSVCYGCQLLFDWVRRKHHCRYCGRIFCEPCTSKRCLIREEQILQSPDRQFLAVNAHNPQRVCDECYVTLQPEQPTLR-ESTSNAVMANALNDNGPQRFLNSPYSFTLREEIRKAAYSVKNFMYDGVIKDQSIPLPLLAKAKGIAFLTVIKVGFVLTGRVGTGLVISKLPDGRWSAPSAIGTAGIGWGAQIGGELTDFVIILNTKRAVDAFTSKGQVNLGAELGVAAGPLGRTAAGSVEASADLDIAPCYSYSHSKGLFAGISLEGSVILTRPDINRAFYGREVQATELLGGMEAPPNAATPLYEAL 349          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig100.59.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
FYVE-type0.000e+095.13domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
FYVE-type4.720e-10953.52domain-containing protein n=1 Tax=Tribonema minus ... [more]
FYVE-type1.740e-10757.56domain-containing protein n=1 Tax=Tribonema minus ... [more]
Aste57867_88623.670e-10453.18protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
FYVE-type4.450e-10252.72domain-containing protein n=2 Tax=Saprolegnia TaxI... [more]
FYVE-type5.640e-10254.14domain-containing protein n=1 Tax=Pythium brassicu... [more]
FYVE-type6.610e-10252.08domain-containing protein n=1 Tax=Achlya hypogyna ... [more]
Hypothetical1.150e-10151.78protein n=3 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
FYVE-type1.290e-10153.50domain-containing protein n=3 Tax=Aphanomyces TaxI... [more]
Uncharacterized2.750e-10155.41protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig100contigEcto-sp9_F_contig100:32095..40614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score1016.1
Seed ortholog evalue6e-294
Seed eggNOG ortholog2880.D8LEA9
KEGG koko:K20523
EggNOG free text desc.regulation of ruffle assembly
EggNOG OGsCOG2930@1,KOG1843@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFYVE zinc finger
Ec32 orthologEc-00_001550.1
Exons11
Model size3440
Cds size1659
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928193.2223146-UTR-Ecto-sp9_F_contig100:32094..338161622928193.2223146-UTR-Ecto-sp9_F_contig100:32094..33816Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig100 32095..33816 -
1692277788.1814961-UTR-Ecto-sp9_F_contig100:32094..338161692277788.1814961-UTR-Ecto-sp9_F_contig100:32094..33816Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig100 32095..33816 -
1622928193.4066398-UTR-Ecto-sp9_F_contig100:40555..406141622928193.4066398-UTR-Ecto-sp9_F_contig100:40555..40614Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig100 40556..40614 -
1692277788.3240514-UTR-Ecto-sp9_F_contig100:40555..406141692277788.3240514-UTR-Ecto-sp9_F_contig100:40555..40614Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig100 40556..40614 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928193.2341502-CDS-Ecto-sp9_F_contig100:33816..339401622928193.2341502-CDS-Ecto-sp9_F_contig100:33816..33940Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 33817..33940 -
1692277788.1915731-CDS-Ecto-sp9_F_contig100:33816..339401692277788.1915731-CDS-Ecto-sp9_F_contig100:33816..33940Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 33817..33940 -
1622928193.2513182-CDS-Ecto-sp9_F_contig100:34325..344311622928193.2513182-CDS-Ecto-sp9_F_contig100:34325..34431Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 34326..34431 -
1692277788.2008922-CDS-Ecto-sp9_F_contig100:34325..344311692277788.2008922-CDS-Ecto-sp9_F_contig100:34325..34431Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 34326..34431 -
1622928193.2655332-CDS-Ecto-sp9_F_contig100:34944..350581622928193.2655332-CDS-Ecto-sp9_F_contig100:34944..35058Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 34945..35058 -
1692277788.2133255-CDS-Ecto-sp9_F_contig100:34944..350581692277788.2133255-CDS-Ecto-sp9_F_contig100:34944..35058Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 34945..35058 -
1622928193.2766016-CDS-Ecto-sp9_F_contig100:35278..354601622928193.2766016-CDS-Ecto-sp9_F_contig100:35278..35460Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 35279..35460 -
1692277788.2259426-CDS-Ecto-sp9_F_contig100:35278..354601692277788.2259426-CDS-Ecto-sp9_F_contig100:35278..35460Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 35279..35460 -
1622928193.2870493-CDS-Ecto-sp9_F_contig100:35765..358461622928193.2870493-CDS-Ecto-sp9_F_contig100:35765..35846Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 35766..35846 -
1692277788.236687-CDS-Ecto-sp9_F_contig100:35765..358461692277788.236687-CDS-Ecto-sp9_F_contig100:35765..35846Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 35766..35846 -
1622928193.3011117-CDS-Ecto-sp9_F_contig100:36369..365081622928193.3011117-CDS-Ecto-sp9_F_contig100:36369..36508Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 36370..36508 -
1692277788.246824-CDS-Ecto-sp9_F_contig100:36369..365081692277788.246824-CDS-Ecto-sp9_F_contig100:36369..36508Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 36370..36508 -
1622928193.3226035-CDS-Ecto-sp9_F_contig100:37164..373121622928193.3226035-CDS-Ecto-sp9_F_contig100:37164..37312Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 37165..37312 -
1692277788.2568967-CDS-Ecto-sp9_F_contig100:37164..373121692277788.2568967-CDS-Ecto-sp9_F_contig100:37164..37312Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 37165..37312 -
1622928193.3458402-CDS-Ecto-sp9_F_contig100:37805..380491622928193.3458402-CDS-Ecto-sp9_F_contig100:37805..38049Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 37806..38049 -
1692277788.272216-CDS-Ecto-sp9_F_contig100:37805..380491692277788.272216-CDS-Ecto-sp9_F_contig100:37805..38049Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 37806..38049 -
1622928193.3607836-CDS-Ecto-sp9_F_contig100:38613..389841622928193.3607836-CDS-Ecto-sp9_F_contig100:38613..38984Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 38614..38984 -
1692277788.2789712-CDS-Ecto-sp9_F_contig100:38613..389841692277788.2789712-CDS-Ecto-sp9_F_contig100:38613..38984Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 38614..38984 -
1622928193.3752506-CDS-Ecto-sp9_F_contig100:39298..393851622928193.3752506-CDS-Ecto-sp9_F_contig100:39298..39385Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 39299..39385 -
1692277788.2859366-CDS-Ecto-sp9_F_contig100:39298..393851692277788.2859366-CDS-Ecto-sp9_F_contig100:39298..39385Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 39299..39385 -
1622928193.390992-CDS-Ecto-sp9_F_contig100:40492..405551622928193.390992-CDS-Ecto-sp9_F_contig100:40492..40555Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 40493..40555 -
1692277788.3052497-CDS-Ecto-sp9_F_contig100:40492..405551692277788.3052497-CDS-Ecto-sp9_F_contig100:40492..40555Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 40493..40555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig100.59.1prot_Ecto-sp9_F_contig100.59.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig100 33817..40555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig100.59.1

>prot_Ecto-sp9_F_contig100.59.1 ID=prot_Ecto-sp9_F_contig100.59.1|Name=mRNA_Ecto-sp9_F_contig100.59.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=553bp
MMTAAFGDESASSMSLLPPTEGSGGDTGEDVDGYPREAARLLEEENPHHQ
PSHNGQLREQQDVPGRQLMEDRWPSGQYSSLTTVPPGGASGGSGGNPNVA
WQDPNTTTSGSDGDSDGMVTPTPGQGQAGLAPLDEQPPPDPFAMERPPIV
NGGGGGAVGGEIRAKPPVVPRPARREWNLTTTKPSPKLSPTAVGATGAAN
GHISSEGKGVGVAGVGGGSVAGGGGVGLKPPKWLPDEDTASCSGCGRDFD
WARRRHHCRLCGGIFCYACSQFRALLPRSFGSRDPQRLCQPCNARVAPLQ
EMLAAESVSNAVKENDVERGTVASYLNRPIVFTLGAEVRKAAYTIHNFSK
EGMIQDQSIPQELLSRAKGLAFLTVIKGGFIVAGRVGTGLVISKTDEGVW
SAPSAIATLGMGWGALIGGEITDFVLVLNTDAALEAFSGRGQVSIGAELS
VAVGPVGRTGAGNVSVAAEGVAHAYSYSHSRGLFAGLSLEGGVIVSRPDV
NRKFYGRQVSVRELLSGSVAPPPAARPLYEALDNRGPAADQQRLLSQGFR
VG*
back to top

mRNA from alignment at Ecto-sp9_F_contig100:32095..40614-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig100.59.1 ID=mRNA_Ecto-sp9_F_contig100.59.1|Name=mRNA_Ecto-sp9_F_contig100.59.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=8520bp|location=Sequence derived from alignment at Ecto-sp9_F_contig100:32095..40614- (Ectocarpus species9 EcSCA_722f female)
CGGAGCACAGACAGAGAGGGGCACAGCTGGAGGCTTTCGCACTAACAAGG GCAGGGGAAATGATGACGGCTGCCTTCGGCGATGAATCGGCTAGCTCCAT GAGCCTTCTTCCGCCAACTGAGGTACGTGCTGCTCTGGGTACCGTGCTGT ACACGTCAACTTCAATTTCCTCCGCCGACCTCCATCGTTCGCGATGAGTA GGGTTCGCCATCCAGACTACCTGCCGTACTTACCGTGCCTCACCCAAGCG CCCACCACCCTGTCTGAGCATCATGCATAAGCTCTCTCATTTGAGGAGTA TTAATTTCGCAATGCTAGAAGTACCGCGGGTGTCGCTGTAGTACAAGGTC TTTGTTTACTGCTTGACATAATGCAGCCCAGTGCTGCGGAATCCATGTGT GCCGTTGTGTGCGAAGCCTACAAGTAACGGCGGTGCCGTGAACGCGCGAA GTTCTGGTGGCACAGGCTACACTTGTTCCTGCGTCGTATGGTGTGTCGCC GGTGCCCTCAGTATACATTTTTGACGCCTGCTTGTGTCGACGCAGTGGGA AAGCCGCCATCCCACAATCCCTATTCGAACTTCGGACCTCACCAGATACA ATAGCACGGGCGGTGTGTACGATGGTTGTAATATGCGTATGTACCAGCTG GGGGGGGAGGCGCCCATATATGACACATTTTGAAGCTGGCCAATGGAACG AGGGGGGCATGTCGCACTCAACTCAAGAGTCGCACTCTACTACTGCTTGT ACACTTTTTTCGGGTCCCGTTATTTGGTTACGTTTCTAGAAGTACATAAC ATTCTCGAGGCAGGTGTCAAATTCTCATTTCGACTCTAATGCGCATGTAT GTATGTGAAGCAACAGGAGGCCAACCACCGCGCAAAACTCGAAAGACTAC AAGTAGTTATCGCCGTACAAGCTTATCCCACTTTGTGCGAGAAGTTCGTT TTTGCAACCTAGTTCTTCTTCCATAGTATGCATACCGCTGAGAAAAGGCG ACAATTACGCTTCCCTCCCACTTTCTCGAGTCGACCGTGGTCGTCGCGGT TCTTTGAACTGCTGTGAGGTTATGTTTACTTTCTAATTATGCTGCCAGCC ACGGGAAGGCATACTAGTTCTACGTAGATTTTATTTTGTTTCAATCGTCG TGTGTGCCTCTACTTAATTTCTGACCGTATGCGGGCGGGCCGCTACGTTT GTTACGTATGTTTTGTATTACATGTACAGGGCTCTGGCGGCGATACCGGG GAGGATGTAGATGGATACCCACGAGAGGCGGCGCGATTACTGGAGGAGGA AAACCCCCATCATCAGGTGCGATGGAACTCTGCTTCTCTTTTTTAACTGC CGTGTAGACGCAAAGAACTATAGTGGTGCATGTTTTTTTTTCTTGTGAGG TTTGCGCTTATTTTTCTGCCGCTGAGTGGCGTTCCTTGACGGGGAGAGGG GGGGCGGCAGGAAATGTTTTTGAAGGTCACACGATACCTTCTGCATAATG TCGGACGGCTCAGAGCTCCAGCCTCCTTTCTCAGAATCGCTTGCTACTAC CTCTTGGAAAGTTATCTTGCGTCCATCCTCAAACACGCCTCCTTCCTCTT GCTGTCCTATCCACCCCGTCGCCGCCCCAGCCGTCCCACAACGGCCAACT CCGCGAGCAGCAAGACGTGCCAGGCCGGCAGCTCATGGAAGACAGGTGGC CCAGCGGACAATACTCCTCTTTGACAACGGTACCACCAGGTGGTGCTAGT GGTGGCAGTGGTGGCAACCCCAACGTAGCTTGGCAAGATCCAAACACCAC GACAAGTGGTAGCGACGGCGACAGCGACGGCATGGTTACTCCCACTCCCG GACAGGGCCAGGCCGGACTAGCCCCGCTTGACGAGCAACCTCCCCCGGAT CCGTTTGCGATGGAGAGGCCGCCGATCGTCAACGGCGGGGGGGGGGGCGC CGTGGGAGGGGAAATTCGCGCGAAGCCCCCAGTCGTGCCACGGCCGGCAA GGTATAGTAGCGGCGTGGCTGTTGCTCTGGTAGTGCTACATGTAAGATTA GCTTTGCCAGACTCCTGGTGGTCTGGCTGGATGGATGACCGTCAAGCGTT GAAATGAAGCGTTTTAATTGTACACGATTAAGGGCCGACGTCCAAAGTAT CATGAAAGGGTGGTTTCCGACGATTTTTAAGTTCTCCAGGATTGACCTCT TCGCTTGTACCGGCCGAAGCTGGTGGGCCTGGAGTCAGATCCGGCTTGTG TTGACATCGAAAAACTGGGCACGTGAGGCATAGCGCCGCCGCTCATCTGC TTGCGACGCAGCAGTGCCAGCCACTGCGGTAGCGCAGCAGTAACACATGC GCTGGCGGGATACTAACGCCAACACGCTCCAACACGCCGTCGTGCCTTGG TCTCCAATGCAGCGCGTACCCAAAGCCCCATCAAGACTTTGCCGCATTCG TTGCAAAGAAGGAGTGGGTATGACGGAACCGATCATTGCGAAAGGTGGGC TCTACAGGCTTATGACCCCCGCCCCCGTATGTATTCTTCATGTTAATCTT CCGCCGTTCGCGCAGGAGGGAATGGAACCTGACCACGACCAAGCCGTCTC CGAAGCTCTCGCCCACCGCGGTTGGCGCCACCGGCGCCGCGAACGGCCAC ATTTCCAGCGAGGGCAAGGGCGTCGGTGTGGCGGGAGTAGGAGGTGGGAG CGTGGCAGGCGGTGGGGGTGTGGGCCTGAAGCCCCCCAAGTGGTTGCCCG ACGAGGACACTGCGTCGTGCTCGGGATGCGGGCGAGATTTTGATTGGGCG AGACGAAGGGTGAGGGTATGCCCGTTGTGCGGGGAGAGGGGGGAGGGTCA CGCTCACAGAGGAGAAGCTCCCAAGACTGGTGTTCCACGCGTGGTTCGGG GCAATGGATTATTCGGATGTATTCACCTGCTACATCTGCGCCTGTGCGTA GCGGATATGTTATTCTCTGCTGGCAGCGCCGTAATTTTGTCAACTAAATA GTCCGATAGAGATACAGAGACGTCTTTGGCGGGTTTGTCGTGTTTGATCG GTATGTTGAACGTGGTCGTGGTCATAACTGCCGCCCCCTTGTAGGTCGTG GGTCTGTTTCAGGCCGTCGTTTCCCCCCCCCCCCCCCCACGCCCCGCCGG ACATGTCTTTCAATGCACAGATCCCCAACGCCGTGGCCTTGCCTCTTCCC ACACCTTATTTTCGCAAATGGCGCCCCTTTTTCCGGCAACTCCTCCTTTG TTGTGCTGTACCACGGTTGTTATTGTGTGTCTGGCTCCTGTGGCATCGTC AGCACCACTGTCGCCTCTGCGGCGGCATCTTCTGCTATGCGTGCAGCCAG TTCCGCGCGTTGTTGCCGCGATCGTTCGGGTCCCGAGACCCTCAGCGCCT TTGCCAGCCCTGCAATGCTAGGGTTGCGCCGCTGCAGGAGATGCTGGCCG GTGGGTGCTCTTGGTGTAAACTTTTGCGCGCTAGTGGCGGTGTGAGCAAG CAAAAACTGGGTTCGCAGCGGCGTGTGTGGTCGCATGATTCGCTACCACA TTTGTGTGTATCGTTGGTGAGGGAGGGCAAAGGGAACAGGTGGTGTGTAG CCTAGGATTACCTCTTTGGAAATTTAACGCTGTGAAACCTTTGCCTGCAG CGATTTGTAGAAAATGATTTTTTTACCATCACAGAAAGACTACTCGTTTG ACATATAACTTCGCACGCTGTGTTATCCGAAACTGCAAGTATCGCGAAGA TTCCGCAGGCCCTTATGATGTTGTACATGGTAGATTGCTCGGGCTGTTAG ATTGTGGGACCGAGTCTTTGTAGTGTGGGCAATGCGGTGAAGGGAGGCAA CGTGTGTCAATGGCGGGGAAAGTGTGTCTAGAAGTCTAAGGTCATAAACA GCATACCATTTGGTTCGGCAGACGGGTTGTACGGTTGTACCCGTCTTCGC CATGGCTGAAGCGTGCCACCACAATGCACAATTAGCGAAATCCCTAGACG GCGTCGAAATCTCCCGCGGATTCATGCACCAGTTGCTGCATGCATGCTTA CACGAAACACTTGGAATATGCCCCCACTGCTGCTGGTCGCACCCCTTCCT GCGGAGCAGAGAGCGTTAGCAACGCCGTCAAGGAGAACGATGTGGAGCGA GGAACCGTGGCCTCTTACCTCAACCGCCCGATCGTCTTCACGCTGGGAGC CGAGGTTCGAAAAGCCGCGTACACCATCCACAACTTCTCCAAAGAGTGAG TGAAGTGAAACGCGGACGCGGAGTGCAGCCTATGCCAGGGTGTTCTATCG CGTCTGGTCTTGGTCGGTGGCGATGTCGGTGGCTGGGTTGCCCGTGGAAG TCGCTGTCTGTTTTGTTGCGCTCTTGGGTTGGAGGCACGGTGCAATGGTG TTTCTGCCGTCGCAGCCATCCCGTTCTGTGTTCACCATGTGTTCGTCGTG GTTGCCGTTGCTATCGCTTTTGCTCTCGGTGTTGCTGCTGGTGCTGTCTC TGCTGCTGATGCTGCTGCTGTCATCGTCGCGGTGTTGAAAGTGCTGTTGT TGTCGCTGCTGGCGTTGGTTTCCGCGTGGCATGTACTGCTACGCTGGGGC TCCTCGTAAGCGCTTGGCGTTTGGGTGGTGGGCGGTGATGTCGACGCCGT CGTTATCCTCTTCGCGCGTGCTCTTGGCACTACACACGCTCGTCTTCATC CTGAAACGATTTCCCTGTCGTCTGTCGACGTTGATTTGCTTCGGCCCTCT CGATCGCGTCGCGAAAAGGGGCATGATTCAAGACCAGTCCATACCGCAGG AGCTCCTTAGCCGCGCCAAAGGACTCGCGTTCCTGACGGTCATCAAAGGG TAAGTCATGATCGATGCACAAGAGAACACACCCCAGTGATAACTTCTAAA ACAAGTATCAACGGGTGTGGCATTGGGTTGGGGCGTGTGATGTCGTTTGT CGTCCTAGTGCTTGATCCGAGGGTATTTTTATGTTTTGGGCTCATGTTGA CACGCCCATGATCTTGAGATTGAGGTCAGCACGACTGTTTGACGCAACGA CGAAACGTCACCACCACTACTTCCAACAACATGCAATAGCAATAGTCATT CCTCGTCTCTTTTGTTCCTCTGCATGCATGATGGCAACCGCAAATCGATC GCAGGGGGTTTATCGTTGCCGGCCGTGTGGGCACTGGCCTGGTCATCTCC AAGACGGACGAGGGAGTGTGGTCCGCGCCCTCCGCCATAGCGACGCTGGG CATGGGCTGGGGCGCGCTCATCGGGGGCGAGATCACCGACTTCGTGCTGG TGCTCAACACGGATGCAGCCCTGGAGGCCTTCTCAGGTGCGTAAACGGGG GCTGGGAGTCATGAACACGTTCTAGTCTTTTCCATGAACAGCTTGGTCAC ACATGATGGATTGTTTTCATTACCGTCGCAGTATCCACGAAAATATTGCG CACAGCCTTTGTCCCTTCTGTCTCACCAAAACATGGGAGTTATTGATACA CGCGTTGCTGACGTGCATCCTATCCTCGCCTGCCTTGCATCGCATCGTGT TTGTAGGAAGAGGTCAGGTGTCCATCGGCGCAGAGCTTAGCGTGGCGGTC GGTCCCGTGGGGCGCACAGGGGCTGGCAACGTCAGCGTCGCGGCGGAGGG CGTCGCTCACGCTTATTCTTGTGAGTCAGTCACTCAGTCACTCGGCATTA CAAGACATCCTCGGCCTCGTTTACCTCTCATGCGGTAAAAGACGGTTTCG ATGCTAAGGAGCGTGGCAGAGGAGCCTCGTGGGCATCAAAACCGAACTCT CAAGAAGAAGCTAGGGAGGAATTGTTTTATCATTTTGGAACGGGTGTTTG TGTGCGAAGTAGTGTTGGTCGATGGCATACCTACCTGTGCGGGGCTAGAA ATCGGACATTCAGTTCTCCTCTTGTATCCTTTTAATATGTATTCCCATTC TTTTTGTTGTCCCACAGTTGCCTTACCACGAATGAAGGTCACCATGAAAA GGACACGACTGCGTGATGCGGTATGTGTGTGCCGTGAGATACCGCAGGTT GAATTGATACCAATGCGAGCGATATTCTCCTCATACCGTTTCTATAGTGA ACCCTACTCGCCTCCCGGCGCTGTTCCGATTGCCCTGTTTGTCGGGGTCC CAACACGACGGCTGGTACTCTACGGTGCCGCAGACAGTCACAGCAGAGGC CTGTTTGCAGGTCTGAGCCTAGAGGGGGGAGTGATCGTGTCCAGACCGGA CGTGAACAGAAAATTTTATGGCCGACAAGTTTCCGTGAGGTGAGAAAGGC GGGGTAACAAGAAGAGGGGTTTGATTTTGTGTGAGGAAGAGTCCATTGGT GGCCGACAACGTCATACCAGTTTTCGGCAAGCTCTCGCCGTAGCGTCGCT TTTCGCGTCCACCACTGACAGCCCCGTACTCGATGCAGCGCCTGCACATG TCTTGTCCATGTGCATAATTAGCCAGGTAAATCGATCGTATCACCGAATA CAGGGAAACATGGGTACCTAGACAGCCCAGCTTCCCTCCCCAAAATGATC ATGTATCGAGCTCTTCGTCGACACTGTACGGTACTGCCACAAGCTTGCTC TTGTTATTGCTGTTGTTGTACAGTTGTTCTAACGGTTGCTGTTCCTACCG ATTTGTTTTGGTGCTGCGGTCCAGGGAACTCCTTTCTGGAAGCGTAGCGC CTCCACCAGCGGCCCGGCCTCTATACGAAGCTCTAGATAACAGGGGGCCA GCCGCCGACCAACAGCGGCTCCTTTCGCAAGGATTTCGGGTAGGCTAGAA ATGCGAGGGGGAGATCAACAGCAGGGCGTAAGCTGGTCCTTAAGGATTCG GGTGGGCTGCATGCACGGGAGAAAACGTTTCATGTCAGAGGGCGGGTTCG GTCGAATGAATCGTAGCGGTTCCGGTGTAAATCGGGCGGGTTACCGTTAC CTGGGGTTGTTCGGTGTTGAGCTTGTGGCCTTTGCGTAGATCGGAAAGGA ATTCAAACCATCTCCGAAGAAAGTTGCTCAACAGTCACGCCCGCGTGAGA TGTGGCGCATTTATTTGGAACTTTTTTTCTTGGTTCTACTGCCGGATGAT GAAAGACCCGCCAGGCACTATACTGTTGGATGTTTCTCGGCATGTTTCAA TCGATGCACACGGATGTGCTGCACGCGTGGTGTTGTTGTACCGTACGATA TCTCCGTAGATGTGATTGTTATATGCGGTTGTGGAAGAAAGTGAGGGAGA AGCGTACATGTTCCATCAGAATGTTCCATCAGAAATGATGCGTTGGCGGT GTGATTCTTGGTTGCGTTGCAAATGCCCCTTGTGTTTATGTTTTGCATAT CGTTTGGTGGAGTAGGCAGGCCCCGCCCGGCGGCCAGGATGGTCCAATCG CGGCGTGGGAGCTGTAGTTGTCGGTGTATGGACTGTGGTGCTGCATGCCG TGAGAGGTACCTTGCGCACAGCAGTAGTGCATGAAGCACGTAGTACATGG AGTCTCTTGTGCGAAGTTTGCTGAGACTCGGGAGCAACTCCTTCTAAAAT TCAGGGGCCAAACTCGTGGATGACGTGACTCTCCAGCGAGAGGGCCCTGG GAGCGAGAATAGACCGACGAGCGTATGCGACAGAGCCACGGAGACCAGTT GTGGATAGAGTTGAAGTGTTTCGACCAAAGCCACGACAAAACACGGCGGC GTTGGAATATCCTCGCCACGCAACGGTTGTGTGTTCGGGTCAAGTTGCTA CTGCGCGAAGGCGGGCGCGGCGTGTGTTGAAAATATTTTGTGCTGAGTGC GTCCTGTTCGCTTGGGAGTGAAGAAGACCAAGAGAAAGTAGACACTTCGC GCATGTAGGAAAGCACACAAGCTTTCGCACATCGCAAGAATAGTGTGGGC AATGGTAATGGAGGGAGTGATGCAGCGACAGAAGGAGTCGTTTCGAGCTT TCAAGCCTCTGCCTTCCGTGGACCATGTAGACAGAGTATATTCTGTAGTC TAGAACTGAAAAATCCGTCGTACGGTTTCAAGTAATAGGCACAGAACTGA GGATCCTTCTGCGTGTTTAGGATATTTAGCAGATCGAGTCTTGGTACTTG GTTGTCTTCATGGACCTCCTGTAGATCCACCTCATATGCTTGGCTTCTTG GTCGACAGCAACGGTGGGCGGGGCTGTGCAGATTGAGTTGGCGTCCGGCA TGCCTTTTAATGACTGCTGCCGACACACTTTTTTTATGGGTGAAGAACGT GCAAGAGGGCGTTCCCCCTGCGTATTGGGAGGCGCCTCTTGTATTCATGG TTGACCGAGAGGCTGGGTTCTGACTTCCTTTGTTGGGGTAGAGTATGCAG TAATTCTATAACCCAACAACGACTATTTATTTTGTCCGTAGGTGCTTTGT TGAGCACCTGTTTCATCCTATGTCAAGTCGATCTATCCCTTTGATATCTT GTTCTCCTTGGTTGCCTGAAGTTAATACCTCCTGTTGTACGTTGTGTTTC GACATTTTTTTCGTTGTTAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig100:32095..40614-

>mRNA_Ecto-sp9_F_contig100.59.1 ID=mRNA_Ecto-sp9_F_contig100.59.1|Name=mRNA_Ecto-sp9_F_contig100.59.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3318bp|location=Sequence derived from alignment at Ecto-sp9_F_contig100:32095..40614- (Ectocarpus species9 EcSCA_722f female)
ATGATGACGGCTGCCTTCGGCGATGAATCGGCTAGCTCCATGAGCCTTCT
TCCGCCAACTGAGATGATGACGGCTGCCTTCGGCGATGAATCGGCTAGCT
CCATGAGCCTTCTTCCGCCAACTGAGGGCTCTGGCGGCGATACCGGGGAG
GATGTAGATGGATACCCACGAGAGGCGGCGCGATTACTGGAGGAGGAAAA
CCCCCATCATCAGGGCTCTGGCGGCGATACCGGGGAGGATGTAGATGGAT
ACCCACGAGAGGCGGCGCGATTACTGGAGGAGGAAAACCCCCATCATCAG
CCGTCCCACAACGGCCAACTCCGCGAGCAGCAAGACGTGCCAGGCCGGCA
GCTCATGGAAGACAGGTGGCCCAGCGGACAATACTCCTCTTTGACAACGG
TACCACCAGGTGGTGCTAGTGGTGGCAGTGGTGGCAACCCCAACGTAGCT
TGGCAAGATCCAAACACCACGACAAGTGGTAGCGACGGCGACAGCGACGG
CATGGTTACTCCCACTCCCGGACAGGGCCAGGCCGGACTAGCCCCGCTTG
ACGAGCAACCTCCCCCGGATCCGTTTGCGATGGAGAGGCCGCCGATCGTC
AACGGCGGGGGGGGGGGCGCCGTGGGAGGGGAAATTCGCGCGAAGCCCCC
AGTCGTGCCACGGCCGGCAAGCCGTCCCACAACGGCCAACTCCGCGAGCA
GCAAGACGTGCCAGGCCGGCAGCTCATGGAAGACAGGTGGCCCAGCGGAC
AATACTCCTCTTTGACAACGGTACCACCAGGTGGTGCTAGTGGTGGCAGT
GGTGGCAACCCCAACGTAGCTTGGCAAGATCCAAACACCACGACAAGTGG
TAGCGACGGCGACAGCGACGGCATGGTTACTCCCACTCCCGGACAGGGCC
AGGCCGGACTAGCCCCGCTTGACGAGCAACCTCCCCCGGATCCGTTTGCG
ATGGAGAGGCCGCCGATCGTCAACGGCGGGGGGGGGGGCGCCGTGGGAGG
GGAAATTCGCGCGAAGCCCCCAGTCGTGCCACGGCCGGCAAGGAGGGAAT
GGAACCTGACCACGACCAAGCCGTCTCCGAAGCTCTCGCCCACCGCGGTT
GGCGCCACCGGCGCCGCGAACGGCCACATTTCCAGCGAGGGCAAGGGCGT
CGGTGTGGCGGGAGTAGGAGGTGGGAGCGTGGCAGGCGGTGGGGGTGTGG
GCCTGAAGCCCCCCAAGTGGTTGCCCGACGAGGACACTGCGTCGTGCTCG
GGATGCGGGCGAGATTTTGATTGGGCGAGACGAAGGGAGGGAATGGAACC
TGACCACGACCAAGCCGTCTCCGAAGCTCTCGCCCACCGCGGTTGGCGCC
ACCGGCGCCGCGAACGGCCACATTTCCAGCGAGGGCAAGGGCGTCGGTGT
GGCGGGAGTAGGAGGTGGGAGCGTGGCAGGCGGTGGGGGTGTGGGCCTGA
AGCCCCCCAAGTGGTTGCCCGACGAGGACACTGCGTCGTGCTCGGGATGC
GGGCGAGATTTTGATTGGGCGAGACGAAGGCACCACTGTCGCCTCTGCGG
CGGCATCTTCTGCTATGCGTGCAGCCAGTTCCGCGCGTTGTTGCCGCGAT
CGTTCGGGTCCCGAGACCCTCAGCGCCTTTGCCAGCCCTGCAATGCTAGG
GTTGCGCCGCTGCAGGAGATGCTGGCCGCACCACTGTCGCCTCTGCGGCG
GCATCTTCTGCTATGCGTGCAGCCAGTTCCGCGCGTTGTTGCCGCGATCG
TTCGGGTCCCGAGACCCTCAGCGCCTTTGCCAGCCCTGCAATGCTAGGGT
TGCGCCGCTGCAGGAGATGCTGGCCGCAGAGAGCGTTAGCAACGCCGTCA
AGGAGAACGATGTGGAGCGAGGAACCGTGGCCTCTTACCTCAACCGCCCG
ATCGTCTTCACGCTGGGAGCCGAGGTTCGAAAAGCCGCGTACACCATCCA
CAACTTCTCCAAAGACAGAGAGCGTTAGCAACGCCGTCAAGGAGAACGAT
GTGGAGCGAGGAACCGTGGCCTCTTACCTCAACCGCCCGATCGTCTTCAC
GCTGGGAGCCGAGGTTCGAAAAGCCGCGTACACCATCCACAACTTCTCCA
AAGAGGGCATGATTCAAGACCAGTCCATACCGCAGGAGCTCCTTAGCCGC
GCCAAAGGACTCGCGTTCCTGACGGTCATCAAAGGGGGCATGATTCAAGA
CCAGTCCATACCGCAGGAGCTCCTTAGCCGCGCCAAAGGACTCGCGTTCC
TGACGGTCATCAAAGGGGGGTTTATCGTTGCCGGCCGTGTGGGCACTGGC
CTGGTCATCTCCAAGACGGACGAGGGAGTGTGGTCCGCGCCCTCCGCCAT
AGCGACGCTGGGCATGGGCTGGGGCGCGCTCATCGGGGGCGAGATCACCG
ACTTCGTGCTGGTGCTCAACACGGATGCAGCCCTGGAGGCCTTCTCAGGG
GGTTTATCGTTGCCGGCCGTGTGGGCACTGGCCTGGTCATCTCCAAGACG
GACGAGGGAGTGTGGTCCGCGCCCTCCGCCATAGCGACGCTGGGCATGGG
CTGGGGCGCGCTCATCGGGGGCGAGATCACCGACTTCGTGCTGGTGCTCA
ACACGGATGCAGCCCTGGAGGCCTTCTCAGGAAGAGGTCAGGTGTCCATC
GGCGCAGAGCTTAGCGTGGCGGTCGGTCCCGTGGGGCGCACAGGGGCTGG
CAACGTCAGCGTCGCGGCGGAGGGCGTCGCTCACGCTTATTCTTGAAGAG
GTCAGGTGTCCATCGGCGCAGAGCTTAGCGTGGCGGTCGGTCCCGTGGGG
CGCACAGGGGCTGGCAACGTCAGCGTCGCGGCGGAGGGCGTCGCTCACGC
TTATTCTTACAGTCACAGCAGAGGCCTGTTTGCAGGTCTGAGCCTAGAGG
GGGGAGTGATCGTGTCCAGACCGGACGTGAACAGAAAATTTTATGGCCGA
CAAGTTTCCGTGAGACAGTCACAGCAGAGGCCTGTTTGCAGGTCTGAGCC
TAGAGGGGGGAGTGATCGTGTCCAGACCGGACGTGAACAGAAAATTTTAT
GGCCGACAAGTTTCCGTGAGGGAACTCCTTTCTGGAAGCGTAGCGCCTCC
ACCAGCGGCCCGGCCTCTATACGAAGCTCTAGATAACAGGGGGCCAGCCG
CCGACCAACAGCGGCTCCTTTCGCAAGGATTTCGGGTAGGCTAGGGAACT
CCTTTCTGGAAGCGTAGCGCCTCCACCAGCGGCCCGGCCTCTATACGAAG
CTCTAGATAACAGGGGGCCAGCCGCCGACCAACAGCGGCTCCTTTCGCAA
GGATTTCGGGTAGGCTAG
back to top