mRNA_Ecto-sp9_F_contig100.58.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig100.58.1
Unique NamemRNA_Ecto-sp9_F_contig100.58.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig100.58.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig100contigEcto-sp9_F_contig100:29141..31376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_001560.1
Exons3
Model size1125
Cds size1125
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig100.58.1prot_Ecto-sp9_F_contig100.58.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig100 29141..31376 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928193.1471138-CDS-Ecto-sp9_F_contig100:29140..300131622928193.1471138-CDS-Ecto-sp9_F_contig100:29140..30013Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 29141..30013 -
1692277788.1437762-CDS-Ecto-sp9_F_contig100:29140..300131692277788.1437762-CDS-Ecto-sp9_F_contig100:29140..30013Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 29141..30013 -
1622928193.1618767-CDS-Ecto-sp9_F_contig100:30487..306141622928193.1618767-CDS-Ecto-sp9_F_contig100:30487..30614Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 30488..30614 -
1692277788.1564362-CDS-Ecto-sp9_F_contig100:30487..306141692277788.1564362-CDS-Ecto-sp9_F_contig100:30487..30614Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 30488..30614 -
1622928193.1786597-CDS-Ecto-sp9_F_contig100:31251..313761622928193.1786597-CDS-Ecto-sp9_F_contig100:31251..31376Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 31252..31376 -
1692277788.1650145-CDS-Ecto-sp9_F_contig100:31251..313761692277788.1650145-CDS-Ecto-sp9_F_contig100:31251..31376Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig100 31252..31376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig100.58.1

>prot_Ecto-sp9_F_contig100.58.1 ID=prot_Ecto-sp9_F_contig100.58.1|Name=mRNA_Ecto-sp9_F_contig100.58.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=375bp
MQQRRCATRRIALPLAILLVLTVFLIWLEFAEGGRKQQAISRRRTKKSRA
GVGKDFSEFLLVIGAIMTCVIAPVFFFFLHSIYKDPATPELARACWNAAK
SKLLSYLGQSPVVPGSAVDTNNTLASLSTPTAARRRTLYANDSTNYFDMR
RDENGNKASGASSASRRATTANTQLHSAGDAITERSYLAVPRPSSRDQSR
PRRYLDDDQREEPPYYGYAAADRRYRRKGEDLQWQPAPGYMAPYSSGAIL
PEQSGGGLKLEEDAFSAARGAQLTRWPQYGGNGGDHTLPAKGVRFLGENE
ARSSQTRRKVEWDPYPDDDDDDGKELQGKPTVDDNMGRGVYKSTQSKRTV
ARSKRARAMNGSLAGKTNGGRQSL*
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mRNA from alignment at Ecto-sp9_F_contig100:29141..31376-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig100.58.1 ID=mRNA_Ecto-sp9_F_contig100.58.1|Name=mRNA_Ecto-sp9_F_contig100.58.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2236bp|location=Sequence derived from alignment at Ecto-sp9_F_contig100:29141..31376- (Ectocarpus species9 EcSCA_722f female)
ATGCAGCAGAGGAGATGCGCGACCAGGCGCATAGCGCTACCGCTCGCGAT
CCTGCTCGTCCTAACTGTTTTCTTGATCTGGCTAGAGTTCGCAGAGGGAG
GGCGGAAGCAGCAGGCGATTTCAAGGTAAACGTGCCGTCCCGTGCTGATG
TGGGCCCGTTGTGTCCACCCGTGACGCCAGATCGTCTTGATTGTCGAGTC
GAAGTGGTTCGTCGTAAAGCTTCGAGAGCCTATTGCCTATTGTATGCAGA
ATAAATAGATAGGCCAGTCGGGCACACGGTTACGTCATTTTGAAGGTTGC
AATCGAATCGCAAAGTGTCCGAAGCAAATTCGGCCAGACCACGAGGAAGG
ATGATCTTTTTCACGCCATTCTGGTGTTTGTGCGAAATACATGACGACTT
CGCAACTGCTTTACTGGCCCACCGTAAGGCACAAGGAAAGAAGACAGTGG
TTGAGCTTCCAAAAGGACGGAACACGCATGTTGAATCAGGTCCGGCGAAC
CCTTACGCAGTGCTTGGTCGTCAGTCCGACGAAGATAGACAGAGTATAGG
CTAGGGTCATTGACACAGCAGTCAATATTTCACACGGCATTTCTCCACAA
CGAGCGTTCCCTTGCTACAACACCATCTTCTTGCCTCCCCAACACCGAGT
ACAACAATCGTCGATATAGAGGCTGTTGGGAAAGGAATTTACACGATACC
GAGTACGTATGATATTCATACTGCCGTCCTTGTCGTTGTCGGCTGCGTAT
GTATATATGCAGGCGACGGACCAAGAAGTCCCGAGCAGGTGTAGGGAAGG
ACTTCTCAGAGTTCCTGCTGGTGATCGGAGCTATTATGACTTGTGTGATC
GCGCCAGTCTTTTTCTTTTTCCTCCACTCCATTTACAAGGTACGTTCCTT
ACCAGCCGTCGACCTACCTACCCCGTGCTACCGTAGATCACATGCCCTAC
ACGGGCGACGCGGGTATCCCCTAGAGTCGGTCGAATCAGTATCGGATCGA
TGTCGACGGCCGGCCAGCGCACGTCCAAACAACGTTTGCCCAAATCGATA
CCGCACCGCTTCTTACATACAGTATATCATGTAGGGCAAAGTCTAGTCTA
TGGCAAGAAATTAACTTGCGATCGTTTAGAAATGAGAGTACTGAACAGCC
TCAACAAGGCGCCACCACCAGCGACACAGTTGATGACGACCACAGGGCAC
AGGCCGAGTAGTTCAATCGGACTATTGTACGCAGCGCCCGGCGCGCATGA
CTTCCAGAAATGGTACCCAGCAAGTCGCGCATGAGGCATGCTACATAATC
TTCTCTGACGTACCGCTACGATTTCGTGTGTGTCTTTCCCACCGAACTGC
TTCCCCCACAAAGGATCCAGCAACTCCTGAGCTGGCGCGGGCATGCTGGA
ATGCCGCCAAGAGCAAGCTGCTCTCCTACCTAGGACAGTCACCTGTGGTG
CCCGGCTCCGCCGTGGATACGAACAACACGTTAGCCTCTTTGTCAACCCC
TACAGCAGCCCGACGTCGTACCCTCTACGCGAACGACAGCACCAACTACT
TCGACATGCGCAGGGACGAAAACGGCAACAAGGCCTCTGGAGCTTCCTCG
GCTTCGCGCCGAGCCACAACAGCTAACACGCAACTGCACTCCGCTGGCGA
TGCCATCACCGAACGATCTTATCTTGCTGTACCTAGGCCGAGTAGCCGAG
ACCAATCCCGGCCCCGGCGATACCTTGATGATGACCAAAGGGAAGAACCA
CCGTACTACGGCTACGCCGCCGCCGACCGGCGCTACCGCCGAAAAGGCGA
AGATTTGCAATGGCAACCAGCACCAGGGTACATGGCACCCTACTCTTCAG
GAGCAATTCTTCCCGAACAAAGCGGAGGGGGGCTCAAGCTGGAAGAGGAC
GCATTTTCGGCGGCAAGGGGGGCACAGCTTACAAGGTGGCCTCAATACGG
CGGCAACGGTGGTGACCATACCCTTCCCGCAAAAGGCGTCAGGTTTCTCG
GTGAGAATGAAGCCCGCAGCTCCCAAACGCGCCGGAAAGTGGAGTGGGAT
CCATACCCAGATGATGATGATGATGATGGGAAGGAGTTGCAGGGCAAACC
AACGGTTGACGATAATATGGGTCGTGGCGTGTACAAAAGCACACAGAGCA
AACGGACGGTGGCAAGAAGCAAGCGGGCGAGGGCCATGAATGGTTCATTG
GCTGGAAAGACGAACGGTGGAAGACAGTCTTTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig100:29141..31376-

>mRNA_Ecto-sp9_F_contig100.58.1 ID=mRNA_Ecto-sp9_F_contig100.58.1|Name=mRNA_Ecto-sp9_F_contig100.58.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2250bp|location=Sequence derived from alignment at Ecto-sp9_F_contig100:29141..31376- (Ectocarpus species9 EcSCA_722f female)
ATGCAGCAGAGGAGATGCGCGACCAGGCGCATAGCGCTACCGCTCGCGAT
CCTGCTCGTCCTAACTGTTTTCTTGATCTGGCTAGAGTTCGCAGAGGGAG
GGCGGAAGCAGCAGGCGATTTCAAGATGCAGCAGAGGAGATGCGCGACCA
GGCGCATAGCGCTACCGCTCGCGATCCTGCTCGTCCTAACTGTTTTCTTG
ATCTGGCTAGAGTTCGCAGAGGGAGGGCGGAAGCAGCAGGCGATTTCAAG
GCGACGGACCAAGAAGTCCCGAGCAGGTGTAGGGAAGGACTTCTCAGAGT
TCCTGCTGGTGATCGGAGCTATTATGACTTGTGTGATCGCGCCAGTCTTT
TTCTTTTTCCTCCACTCCATTTACAAGGCGACGGACCAAGAAGTCCCGAG
CAGGTGTAGGGAAGGACTTCTCAGAGTTCCTGCTGGTGATCGGAGCTATT
ATGACTTGTGTGATCGCGCCAGTCTTTTTCTTTTTCCTCCACTCCATTTA
CAAGGATCCAGCAACTCCTGAGCTGGCGCGGGCATGCTGGAATGCCGCCA
AGAGCAAGCTGCTCTCCTACCTAGGACAGTCACCTGTGGTGCCCGGCTCC
GCCGTGGATACGAACAACACGTTAGCCTCTTTGTCAACCCCTACAGCAGC
CCGACGTCGTACCCTCTACGCGAACGACAGCACCAACTACTTCGACATGC
GCAGGGACGAAAACGGCAACAAGGCCTCTGGAGCTTCCTCGGCTTCGCGC
CGAGCCACAACAGCTAACACGCAACTGCACTCCGCTGGCGATGCCATCAC
CGAACGATCTTATCTTGCTGTACCTAGGCCGAGTAGCCGAGACCAATCCC
GGCCCCGGCGATACCTTGATGATGACCAAAGGGAAGAACCACCGTACTAC
GGCTACGCCGCCGCCGACCGGCGCTACCGCCGAAAAGGCGAAGATTTGCA
ATGGCAACCAGCACCAGGGTACATGGCACCCTACTCTTCAGGAGCAATTC
TTCCCGAACAAAGCGGAGGGGGGCTCAAGCTGGAAGAGGACGCATTTTCG
GCGGCAAGGGGGGCACAGCTTACAAGGTGGCCTCAATACGGCGGCAACGG
TGGTGACCATACCCTTCCCGCAAAAGGCGTCAGGTTTCTCGGTGAGAATG
AAGCCCGCAGCTCCCAAACGCGCCGGAAAGTGGAGTGGGATCCATACCCA
GATGATGATGATGATGATGGGAAGGAGTTGCAGGGCAAACCAACGGTTGA
CGATAATATGGGTCGTGGCGTGTACAAAAGCACACAGAGCAAACGGACGG
TGGCAAGAAGCAAGCGGGCGAGGGCCATGAATGGTTCATTGGCTGGAAAG
ACGAACGGTGGAAGACAGTCTTTGTGAGATCCAGCAACTCCTGAGCTGGC
GCGGGCATGCTGGAATGCCGCCAAGAGCAAGCTGCTCTCCTACCTAGGAC
AGTCACCTGTGGTGCCCGGCTCCGCCGTGGATACGAACAACACGTTAGCC
TCTTTGTCAACCCCTACAGCAGCCCGACGTCGTACCCTCTACGCGAACGA
CAGCACCAACTACTTCGACATGCGCAGGGACGAAAACGGCAACAAGGCCT
CTGGAGCTTCCTCGGCTTCGCGCCGAGCCACAACAGCTAACACGCAACTG
CACTCCGCTGGCGATGCCATCACCGAACGATCTTATCTTGCTGTACCTAG
GCCGAGTAGCCGAGACCAATCCCGGCCCCGGCGATACCTTGATGATGACC
AAAGGGAAGAACCACCGTACTACGGCTACGCCGCCGCCGACCGGCGCTAC
CGCCGAAAAGGCGAAGATTTGCAATGGCAACCAGCACCAGGGTACATGGC
ACCCTACTCTTCAGGAGCAATTCTTCCCGAACAAAGCGGAGGGGGGCTCA
AGCTGGAAGAGGACGCATTTTCGGCGGCAAGGGGGGCACAGCTTACAAGG
TGGCCTCAATACGGCGGCAACGGTGGTGACCATACCCTTCCCGCAAAAGG
CGTCAGGTTTCTCGGTGAGAATGAAGCCCGCAGCTCCCAAACGCGCCGGA
AAGTGGAGTGGGATCCATACCCAGATGATGATGATGATGATGGGAAGGAG
TTGCAGGGCAAACCAACGGTTGACGATAATATGGGTCGTGGCGTGTACAA
AAGCACACAGAGCAAACGGACGGTGGCAAGAAGCAAGCGGGCGAGGGCCA
TGAATGGTTCATTGGCTGGAAAGACGAACGGTGGAAGACAGTCTTTGTGA
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