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Homology
BLAST of mRNA_Ecto-sp9_F_contig10.54.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I8_ECTSI) HSP 1 Score: 271 bits (693), Expect = 1.320e-89 Identity = 165/170 (97.06%), Postives = 165/170 (97.06%), Query Frame = 1
Query: 250 MLVWAEETDRRIATGQLPPLGSRRPPSGDGAVTVTAAEQQGAGASLLSDQEQAQMATLSELLSXXXXXXXXXXXXXESALRAAIAGLSASVENGTDAKALDVAADTSSGPDTSDGGVTAAGHVAEAEDIIPNHIYGSREVRDQVYLYAWSLMKNRQDAAEREAEQRAGPS 759
MLVWAEETDRRIATGQLPPLGSRRPPSGDGAVTVTAAEQQGAGASLLSDQEQAQMATLSELLSXXXXXXXXXXXXXESALRAAIAGLSASVE TDAKALDVAADTSSGPDTSDG VTAAGHVAEAEDIIPNHIYGSREVRDQVYLYAWSLMKNRQDAAE EAEQRAG S
Sbjct: 1 MLVWAEETDRRIATGQLPPLGSRRPPSGDGAVTVTAAEQQGAGASLLSDQEQAQMATLSELLSXXXXXXXXXXXXXESALRAAIAGLSASVEKDTDAKALDVAADTSSGPDTSDGDVTAAGHVAEAEDIIPNHIYGSREVRDQVYLYAWSLMKNRQDAAEGEAEQRAGES 170
BLAST of mRNA_Ecto-sp9_F_contig10.54.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF6_9PHAE) HSP 1 Score: 242 bits (617), Expect = 1.190e-77 Identity = 154/183 (84.15%), Postives = 156/183 (85.25%), Query Frame = 1
Query: 211 NLFRVTPVPTYEEMLVWAEETDRRIATGQLPPLGSRRPPSGDGAVTVTAAEQQGAGASLLSDQEQAQMATLSELLSXXXXXXXXXXXXXESALRAAIAGLSASVENGTDAKALDVAADTSSGPDTSDGGVTAAGHVAEAEDIIPNHIYGSREVRDQVYLYAWSLMKNRQDAAEREAEQRAGPS 759
N RVTPVPTYEEMLVWAEETDRRIATGQLPPLGSRRPPSGD AVTVTAAEQQGAGA LLSD EQAQMATLSELLSXXXXXXXXXXXXXESALRAA+AGLSASVE TDAKALDVAADTSSGPDTSDG +TAAGH AEAEDIIPNHIYGSRE DAAEREAEQRAG S
Sbjct: 33 NAIRVTPVPTYEEMLVWAEETDRRIATGQLPPLGSRRPPSGDAAVTVTAAEQQGAGACLLSDHEQAQMATLSELLSXXXXXXXXXXXXXESALRAAMAGLSASVEKDTDAKALDVAADTSSGPDTSDGDITAAGHEAEAEDIIPNHIYGSRE-----------------DAAEREAEQRAGES 198
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-02_000450.1 |
| Exons | 6 |
| Model size | 762 |
| Cds size | 762 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928192.405286-CDS-Ecto-sp9_F_contig10:70894..70990 | 1622928192.405286-CDS-Ecto-sp9_F_contig10:70894..70990 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10 70895..70990 - |
| 1692277787.4064121-CDS-Ecto-sp9_F_contig10:70894..70990 | 1692277787.4064121-CDS-Ecto-sp9_F_contig10:70894..70990 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10 70895..70990 - |
| 1622928192.4306126-CDS-Ecto-sp9_F_contig10:71301..71476 | 1622928192.4306126-CDS-Ecto-sp9_F_contig10:71301..71476 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10 71302..71476 - |
| 1692277787.4162672-CDS-Ecto-sp9_F_contig10:71301..71476 | 1692277787.4162672-CDS-Ecto-sp9_F_contig10:71301..71476 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10 71302..71476 - |
| 1622928192.4467113-CDS-Ecto-sp9_F_contig10:71968..72048 | 1622928192.4467113-CDS-Ecto-sp9_F_contig10:71968..72048 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10 71969..72048 - |
| 1692277787.4258366-CDS-Ecto-sp9_F_contig10:71968..72048 | 1692277787.4258366-CDS-Ecto-sp9_F_contig10:71968..72048 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10 71969..72048 - |
| 1622928192.4660127-CDS-Ecto-sp9_F_contig10:72747..72936 | 1622928192.4660127-CDS-Ecto-sp9_F_contig10:72747..72936 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10 72748..72936 - |
| 1692277787.4355557-CDS-Ecto-sp9_F_contig10:72747..72936 | 1692277787.4355557-CDS-Ecto-sp9_F_contig10:72747..72936 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10 72748..72936 - |
| 1622928192.478326-CDS-Ecto-sp9_F_contig10:74000..74057 | 1622928192.478326-CDS-Ecto-sp9_F_contig10:74000..74057 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10 74001..74057 - |
| 1692277787.4545238-CDS-Ecto-sp9_F_contig10:74000..74057 | 1692277787.4545238-CDS-Ecto-sp9_F_contig10:74000..74057 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10 74001..74057 - |
| 1622928192.493331-CDS-Ecto-sp9_F_contig10:74783..74948 | 1622928192.493331-CDS-Ecto-sp9_F_contig10:74783..74948 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10 74784..74948 - |
| 1692277787.4727302-CDS-Ecto-sp9_F_contig10:74783..74948 | 1692277787.4727302-CDS-Ecto-sp9_F_contig10:74783..74948 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10 74784..74948 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10.54.1 >prot_Ecto-sp9_F_contig10.54.1 ID=prot_Ecto-sp9_F_contig10.54.1|Name=mRNA_Ecto-sp9_F_contig10.54.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=254bp
MALPIRGGCCVGGLTAFVPSVPPVLGLVSWRSTSRCGSRRPRDLQALSAA
VVEPEQGDDHDQQNQGEDIPNLFRVTPVPTYEEMLVWAEETDRRIATGQL
PPLGSRRPPSGDGAVTVTAAEQQGAGASLLSDQEQAQMATLSELLSKRRR
QSPPLSDEEESALRAAIAGLSASVENGTDAKALDVAADTSSGPDTSDGGV
TAAGHVAEAEDIIPNHIYGSREVRDQVYLYAWSLMKNRQDAAEREAEQRA
GPS* back to topmRNA from alignment at Ecto-sp9_F_contig10:70895..74948- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp9_F_contig10.54.1 ID=mRNA_Ecto-sp9_F_contig10.54.1|Name=mRNA_Ecto-sp9_F_contig10.54.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4054bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10:70895..74948- (Ectocarpus species9 EcSCA_722f female)
ATGGCTTTGCCGATACGAGGCGGGTGTTGCGTAGGTGGCTTGACCGCGTT
CGTCCCTTCCGTACCACCTGTGCTGGGACTGGTTTCATGGCGATCGACAT
CGCGATGCGGCAGCAGGAGGCCTCGTGACTTGCAGGCACTCTCCGCGGCT
GTTGTTGAGCCCGAGGTAGGTATGCGTAAGACGGCTGTGATGGCACTCGC
ACGTCAATCCTCTTCAACTCTCACTCTTGGGCCCCGGTGCCGCAGGCCTC
AATGTGCAGGGTGCCTTGAGAGCAGTAGAGCAGTGGGTGTCTGCATTAGG
ATACGGAAGACATGAAGTGACGCCCATAATTGGGTGTCGGAGCCGGCCGC
GGCAGGTTTGCTGCTGCTGTGGCGGCCTAAGGGAGCAACTGAAAGTGCTG
CTGTCTCCGTAGACTAGGTTACATGTCGTGGGTTGTTGAACCGGCGAACC
TGCGGGGAACTAGTACAAGGCCGCGTGACCATCCCGCTGCTGTACGAAGA
ATGCACTGTTACAGTACAGATGTTCTCTTGTACAATGTGCTCTTGTACAA
TGTGCTCTTGTGCAAAGTGAAAGACTTGCGCTCGTGCGTGCACTCGAGAC
TCTGTACTCTTATCCCACTTGGACGGTACACTGCCAAACAATGTTCACAT
CGACACACAGCGCGCCGGGGAACGACTAAGAACGTCTTGAACATGGGCGA
AGCTTCTTCTTCGGTGGAGGCAAGGGGCCGATTATGATTTCAAGTAAATC
GGGGGAATACTAAATAAATCACCCCAGCAAGTTTTGCGCCGCATGCATCA
ACTACAAGCAGTGCATTTACCGCTGTAGCCCGACGTCCCGCGTGGTGTAC
TCCCCCCACTCCTCCCTATCCTACCGCGTTTGTATTCCCAGCAAGGTGAC
GACCATGACCAACAGAACCAAGGCGAGGATATACCCAACCTGTTTAGGGT
GAGTGGGGATTCTAAGGTCATCTTTGGAATCTGCCTGGAGTGAGACAATA
ATTTTTTGGCGTGGAAAGCGCAAGCGCATGGCCACGAGTAAACACGAAAG
GACGGAAGTAGCGAGCGCTGAACCCTTCTCAGAATCCGAGTCCATCCAGC
TCCTGCCACCCGCCTCTTCTTCTGCTTGGTGCCTCTGAGTTTTTAAACTT
GCACCCAGAATGTAGATGGGACGAACACACAAACCGCACACAATATGATA
CACATACAACATACACCCGGTGAGGATGTTTTGAAGTCAAAAGTACCCAT
CGGGATGAGGTTCGTTCTTTGTGTCGGAGCATTTGGTAGACTGCAAGTCC
ATACATATCCTTCCGCGTCAATAGAAACAGAACCAAGACAGCATGAGGGC
ACTCCACTGCCCGCAATAGCCCCCCGGGCTCAAGGACACACGGCAGTGGC
TGGCGAGGCGGCCACAAAAGGCAGGGACTGCATCATCATGACACCGATAT
GTGGGATTTGCTCTGTCAAAGCCCGCGCAGCAAGCCCCTCCGATGCTGGT
TGGAAACCAGGAAAGTCGGTTTTGGCACTTCCCAGCCACGTCGATCACAG
AAGGGCTAGTCGGAGGCGATCCATACCGGTTGAGAAGTGTATGCCACGCC
ATTCCGGAGAAAATTCCCGGATGGGGATGGGGTGACGTTGTTGATTTTTT
GTTCGGGCGGAGGGCGTTTGCTGGTTGCGTACCAGACGTGTTGGTGCGAT
AGACGTTCTGGTGGCGGACGGGCCACGAAGGGAGTCGTGTACGGGAACAA
GCACTCAAGGCAGCATGGCAGTAGGTGCGACTTCCTTACCTTCGAAAAAC
TTTAGGGTGGCTCTGTTTTGTGTCCTGCTTTTCCGCTGTGACACCAATCC
CCACGGATTCGTAGGATCCCGGCGAAACCACAGATTCACTTAGATGTATA
CATTTCAACGATTTTTCGATTTATGTCATTCCTATCCAAAGCGACTTGTT
CGTCTTGGTTCAACGTCATGTCCTGTCCTTGTACTGCTGTGCGCTACTGC
CCGCTGGTGTAGGTGACACCCGTTCCTACCTATGAGGAGATGCTCGTGTG
GGCGGAAGAGACGGACAGGCGCATAGCCACCGGGCAGCTTCCGCCTTTAG
GCTCGCGGCGCCCCCCCTCAGGAGATGGAGCGGTCACGGTGACAGCCGCA
GAGCAGCAAGGGGCGGGGGCAAGCCTTCTCAGCGACCAAGAACAGGCTCA
GGTGCGTGGGCGTGCTCGTCCTCTGCAAAGCTGCTGCCTCTGCTGATCAG
TTGCCGCAGCTGTTGTGCATATTTTGTGGCTCTGGTGTTTGGTTGACGCT
GTGGGCGAATGAGAAATTTTCGCCGGTGATTCGACCGTGCATGCGTTCGG
CAAGGCTGCTACGCGCGAGCGGCCCGTCTGTCATGCGTACTGTTTTTGCT
GTTTGTAGTTTCTCGTTTTTTGCTGCTGCATGTTGCTGGTCTATCGAGAC
GGGTAGCATTTGCGGGGAAGATTTTCATGCACGGTTGTTTTTTTATTTTT
GGCCCCATCGCTTGGGCGGCTCGTTCTGTGGCGGTTTCATCCATGGCGCA
AAGCAAGAGATGCGTTGGACAGGATATTTCGGTAGGCTGAGGACTTGTCC
CTTCCAGCTATATTTCAGCTGTTATTGCCTCATTGAGTACGAGGAGTATC
CTCTTTCGTGCACCGGCGTATTTGATGAGTATGAGTCCTTCTCTATCAGC
GGGCCAATAGTTGAATCAAGGGTGGTACCCTATTGGTCAACGGGATTTTG
CGTGACTACGCTACGTGCCGATCGGGCGATTTTGCCAAGGGGTTTGCATA
TCTTCTCACTAGTTTTTTGTCTGCAATGCACGCTTCCTTACGGGTTCTTT
TCTTGTGGTTTCGGGAGCACTCAAACGGATGCGGAACATTGCATGCACAG
ATGGCAACGCTTTCGGAGCTCCTGAGCAAACGGCGGCGACAGAGCCCTCC
CTTGTCTGACGAGGAAGAGTCTGCTCTAAGGTGAGACGACGGCAGACGGC
CATCGGACCAGAGTAGTTCTCCCTTACCTCTAGTGGTTGTGTTTGCCGAA
AGGGCTGGGGGGCATGCCGAGAACGATCATGTTGCCATTCTGCGAACAGC
CACGGAAACAATATTAATAGCAACAACACCAACAGCAAGAGTGGCGGCTA
CTTCCGGGGGTAACACGGGCGGCCGAGGAGTGGTTGACCCGACGCACCGC
CTTTGCCTCTTACCATGTTTTTCGCGAAATCCGTAGCGTGTCCAACCCGA
GGTTGTGAATGTGACGCCTCACGGACCCTTGCGCTAGACAAGATGCCACG
CCCGTCTCTGTTACTTCCTGTTACCTTGCAAGTTCTTTGTTGTGAACCAT
GCTTGACTTTCTCTCCAGCAAACTCAATCGAGAACCGCACTTTCGTCTGT
TTGTTTTTGTACAAAAGATCTTGGTGATCGATGCTCCTCTCATGTTGTTT
CTGTTTGTTTGCGTCCTGCCAGAGCCGCCATAGCGGGCCTGTCGGCGTCG
GTGGAGAACGGCACTGACGCGAAAGCCCTTGACGTCGCTGCCGACACCTC
GTCTGGCCCTGACACTTCCGATGGTGGCGTCACCGCTGCCGGTCACGTAG
CGGAGGCGGAAGACATAATTCCAAACCACATCTATGGCTCACGAGAGGTA
ACATTGGGGACTATTCGTTGTTGCTGCTGCGGTCGGTTTCTGTCGGGGCT
TCGTGTTTGGGCGTTTGGGTCCAATAATCCAATCGTGGATGTGGGTACTG
TTGGGGAGCGGCGCTTCTCACGTCAACCTGTTCCACTAGCGATGTCCTAG
TTGTGCGAGTGAGGACACTCCCCGTAGACAGGCTTTGGTAGCTCGGTTGT
TGTGCGTTATGCATTGTGATGATGACGTGTCGCTCCCCCCCCCTCCGCGT
GTTCGTCGCTGCTCTCCGACTATCGCTCTGCTTGGTTCTGCTTATGCTGA
GAGAGAAGGTGCGGGACCAGGTGTACCTCTACGCTTGGTCCTTGATGAAG
AACAGGCAGGACGCGGCCGAGAGAGAGGCCGAGCAGCGAGCGGGACCATC
GTGA back to topCoding sequence (CDS) from alignment at Ecto-sp9_F_contig10:70895..74948- >mRNA_Ecto-sp9_F_contig10.54.1 ID=mRNA_Ecto-sp9_F_contig10.54.1|Name=mRNA_Ecto-sp9_F_contig10.54.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1524bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10:70895..74948- (Ectocarpus species9 EcSCA_722f female)
ATGGCTTTGCCGATACGAGGCGGGTGTTGCGTAGGTGGCTTGACCGCGTT
CGTCCCTTCCGTACCACCTGTGCTGGGACTGGTTTCATGGCGATCGACAT
CGCGATGCGGCAGCAGGAGGCCTCGTGACTTGCAGGCACTCTCCGCGGCT
GTTGTTGAGCCCGAGATGGCTTTGCCGATACGAGGCGGGTGTTGCGTAGG
TGGCTTGACCGCGTTCGTCCCTTCCGTACCACCTGTGCTGGGACTGGTTT
CATGGCGATCGACATCGCGATGCGGCAGCAGGAGGCCTCGTGACTTGCAG
GCACTCTCCGCGGCTGTTGTTGAGCCCGAGCAAGGTGACGACCATGACCA
ACAGAACCAAGGCGAGGATATACCCAACCTGTTTAGGCAAGGTGACGACC
ATGACCAACAGAACCAAGGCGAGGATATACCCAACCTGTTTAGGGTGACA
CCCGTTCCTACCTATGAGGAGATGCTCGTGTGGGCGGAAGAGACGGACAG
GCGCATAGCCACCGGGCAGCTTCCGCCTTTAGGCTCGCGGCGCCCCCCCT
CAGGAGATGGAGCGGTCACGGTGACAGCCGCAGAGCAGCAAGGGGCGGGG
GCAAGCCTTCTCAGCGACCAAGAACAGGCTCAGGTGACACCCGTTCCTAC
CTATGAGGAGATGCTCGTGTGGGCGGAAGAGACGGACAGGCGCATAGCCA
CCGGGCAGCTTCCGCCTTTAGGCTCGCGGCGCCCCCCCTCAGGAGATGGA
GCGGTCACGGTGACAGCCGCAGAGCAGCAAGGGGCGGGGGCAAGCCTTCT
CAGCGACCAAGAACAGGCTCAGATGGCAACGCTTTCGGAGCTCCTGAGCA
AACGGCGGCGACAGAGCCCTCCCTTGTCTGACGAGGAAGAGTCTGCTCTA
AGATGGCAACGCTTTCGGAGCTCCTGAGCAAACGGCGGCGACAGAGCCCT
CCCTTGTCTGACGAGGAAGAGTCTGCTCTAAGAGCCGCCATAGCGGGCCT
GTCGGCGTCGGTGGAGAACGGCACTGACGCGAAAGCCCTTGACGTCGCTG
CCGACACCTCGTCTGGCCCTGACACTTCCGATGGTGGCGTCACCGCTGCC
GGTCACGTAGCGGAGGCGGAAGACATAATTCCAAACCACATCTATGGCTC
ACGAGAGAGCCGCCATAGCGGGCCTGTCGGCGTCGGTGGAGAACGGCACT
GACGCGAAAGCCCTTGACGTCGCTGCCGACACCTCGTCTGGCCCTGACAC
TTCCGATGGTGGCGTCACCGCTGCCGGTCACGTAGCGGAGGCGGAAGACA
TAATTCCAAACCACATCTATGGCTCACGAGAGGTGCGGGACCAGGTGTAC
CTCTACGCTTGGTCCTTGATGAAGAACAGGCAGGACGCGGCCGAGAGAGA
GGCCGAGCAGCGAGCGGGACCATCGTGAGTGCGGGACCAGGTGTACCTCT
ACGCTTGGTCCTTGATGAAGAACAGGCAGGACGCGGCCGAGAGAGAGGCC
GAGCAGCGAGCGGGACCATCGTGA back to top
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