mRNA_Ecto-sp9_F_contig1.24.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1.24.1 vs.
Match: DUF262 (domain-containing protein n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5I968_OSTTA) HSP 1 Score: 779 bits (2012), Expect = 2.650e-285 Identity = 367/372 (98.66%), Postives = 370/372 (99.46%), Query Frame = 1
Query: 1 MESEKRIPKAIDLGQHRDTTVYFLKSTLDEHNSHAAEGKPLLSGPADRYVCGFAIPEFQRPLVWTRDQEVAFIESVWLGLPLGTYTVHEMDWGPGGKPYRFSGILIDGQQRLTTISRYWQDEFPVFGLYWSELTKTEQRRFYGAKFPHFEIELWDEAKIRDLYDRMAFGGTPHEEHQRASRFRRATMHHYHQISSPQAEDFGRVVRAANWLIKACPSVCPVTGKDISDVYTLDNSDTLTPVKLDRAVGNAGGYCKGVQNVSFIAKNAWFVLGDATPDWTLRQFSQMARSCDSSGAPSDLLVCSTLILANFLCPGVWAVDSDASHPMWPHALRLAQRCADDLFFGLEVELPFVGQIEAGDLRASLPDHLDFRR 1116
MESEKRIPKAIDLGQHRDTTVYFLKSTLDEHNSHAAEGKPLLSGPADRYVCGFAIPEFQRPLVWTRDQEVAFIESVWLGLPLGTYTVHEMDWGPGGKPYRFSG+LIDGQQRLTTISRYWQDEFPVF LYWSELTKTEQRRFYGAKFPHFEIELWDE KIRDLYDRMAFGGTPHEEHQRASRFRRATMHHYHQISSPQAEDFGRVVRAANWLIKACPSVCPVTGKDISDVYTLDNSDTLTPVKLDRAVGNAGGYCKGVQNVSFIAKNAWFVLGDATP+WTLRQFSQM+RSCDSSGAPSDLLVCSTLILANFLCPGVWAVDSDASHPMWPHALRLAQRCADDLFFGLEVELPFVGQIEAGDLRASLPDHLDFRR
Sbjct: 1 MESEKRIPKAIDLGQHRDTTVYFLKSTLDEHNSHAAEGKPLLSGPADRYVCGFAIPEFQRPLVWTRDQEVAFIESVWLGLPLGTYTVHEMDWGPGGKPYRFSGVLIDGQQRLTTISRYWQDEFPVFDLYWSELTKTEQRRFYGAKFPHFEIELWDETKIRDLYDRMAFGGTPHEEHQRASRFRRATMHHYHQISSPQAEDFGRVVRAANWLIKACPSVCPVTGKDISDVYTLDNSDTLTPVKLDRAVGNAGGYCKGVQNVSFIAKNAWFVLGDATPEWTLRQFSQMSRSCDSSGAPSDLLVCSTLILANFLCPGVWAVDSDASHPMWPHALRLAQRCADDLFFGLEVELPFVGQIEAGDLRASLPDHLDFRR 372
BLAST of mRNA_Ecto-sp9_F_contig1.24.1 vs.
Match: DUF262 (domain-containing protein n=1 Tax=Marinobacter sp. T13-3 TaxID=1794906 RepID=A0A139DNM4_9GAMM) HSP 1 Score: 233 bits (593), Expect = 1.660e-72 Identity = 105/178 (58.99%), Postives = 131/178 (73.60%), Query Frame = 1
Query: 7 SEKRIPKAIDLGQHRDTTVYFLKSTLDEHNS-HAAEGKPLLSGPADRYVCGFAIPEFQRPLVWTRDQEVAFIESVWLGLPLGTYTVHEMDWGPGGKPYRFSGILIDGQQRLTTISRYWQDEFPVFGLYWSELTKTEQRRFYGAKFPHFEIELWDEAKIRDLYDRMAFGGTPHEEHQRA 537
++ RIP+ +D G+H DT + +L S E+ + A+ +PL++ R+ CGF +P FQR L WTRDQ++AFIES WLGLPLGT+T H++DWG GG FSG LIDGQQRLT I YW+D FPVFGLYWSELT+TE RRF G KFPH+E LWDE+ IRDLY+R+A GG PH QRA
Sbjct: 5 TQPRIPEPLDPGKHSDTVMSYLWSHYQEYKALSASNDEPLITVDTGRFACGFPLPTFQRELCWTRDQQIAFIESAWLGLPLGTFTHHDIDWGSGGHARPFSGWLIDGQQRLTAIQDYWEDRFPVFGLYWSELTRTETRRFKGIKFPHYEAALWDESAIRDLYNRLALGGVPHRPDQRA 182
BLAST of mRNA_Ecto-sp9_F_contig1.24.1 vs.
Match: DUF262 (domain-containing protein n=1 Tax=Halioglobus sp. HI00S01 TaxID=1822214 RepID=A0A165TI54_9GAMM) HSP 1 Score: 229 bits (585), Expect = 2.410e-71 Identity = 104/179 (58.10%), Postives = 127/179 (70.95%), Query Frame = 1
Query: 1 MESEKRIPKAIDLGQHRDTTVYFLKSTLDEHNSHAAEGKPLLSGPADRYVCGFAIPEFQRPLVWTRDQEVAFIESVWLGLPLGTYTVHEMDWGPGGKPYRFSGILIDGQQRLTTISRYWQDEFPVFGLYWSELTKTEQRRFYGAKFPHFEIELWDEAKIRDLYDRMAFGGTPHEEHQRA 537
M + RIP AIDLG+H DT + +L + EH EG+ LL+ DRY CGF +P FQRPL W + QEVAF+ES WLGL LG+++ H M+WG GG FSG LIDGQQRLT++ RYW DEF VFG YWS+L EQRRF + PHFE+ LWDE++IRDLY+R+AFGG PH QRA
Sbjct: 1 MTTAARIPPAIDLGRHFDTAISYLWTNWREHQEMVREGRQLLTVEEDRYACGFPLPTFQRPLCWDQSQEVAFVESAWLGLSLGSFSHHIMEWGQGGVAKPFSGWLIDGQQRLTSLQRYWTDEFRVFGAYWSDLDLVEQRRFKNIRLPHFEVALWDESRIRDLYNRLAFGGVPHTPEQRA 179
BLAST of mRNA_Ecto-sp9_F_contig1.24.1 vs.
Match: DUF262 (domain-containing protein n=1 Tax=Aliivibrio fischeri TaxID=668 RepID=UPI0007C42EC2) HSP 1 Score: 197 bits (500), Expect = 1.560e-58 Identity = 98/180 (54.44%), Postives = 117/180 (65.00%), Query Frame = 1
Query: 16 RIPKAIDLGQHRDTTVYFLKSTLDEHNSHAAEGKPLLSGPADRYVCGFAIPEFQRPLVWTRDQEVAFIESVWLGLPLGTYTVHEMDWGPGGKPYR------FSGILIDGQQRLTTISRYWQDEFPVFGLYWSELTKTEQRRFYGAKFPHFEIELWDEAKIRDLYDRMAFGGTPHEEHQRA 537
RIP AID G + L + + G+ L++ A+RYV G+ +P FQR LVWT QEVAFIESVWLGL +GTY +H+M+W K R FSG LIDGQQRL TI RYW DEF VFGLYWSEL + E RF KFP+ E LWDE KIR+LY+ MAFGGT H+E +RA
Sbjct: 2 RIPTAIDQGTDYQCAISALYAHYKDFVELQENGEELVTDTAERYVLGYPVPPFQRELVWTEQQEVAFIESVWLGLQIGTYNLHKMEWSHESKKERGISAKKFSGWLIDGQQRLNTIERYWNDEFKVFGLYWSELNQQEVIRFKNTKFPYHESSLWDEGKIRNLYNLMAFGGTNHKESERA 181
BLAST of mRNA_Ecto-sp9_F_contig1.24.1 vs.
Match: DUF262 (domain-containing protein n=2 Tax=Ferrimonas marina TaxID=299255 RepID=A0A1M5UHK8_9GAMM) HSP 1 Score: 181 bits (460), Expect = 1.300e-52 Identity = 82/176 (46.59%), Postives = 112/176 (63.64%), Query Frame = 1
Query: 10 EKRIPKAIDLGQHRDTTVYFLKSTLDEHNSHAAEGKPLLSGPADRYVCGFAIPEFQRPLVWTRDQEVAFIESVWLGLPLGTYTVHEMDWGPGGKPYRFSGILIDGQQRLTTISRYWQDEFPVFGLYWSELTKTEQRRFYGAKFPHFEIELWDEAKIRDLYDRMAFGGTPHEEHQRA 537
E R+P+ ID G+ +T++ FL L H + P RY CGF +PEFQR VW DQ+ F+ SV +G+ +GT+ +H +W G P RFSG LIDGQQRLT + +W ++ P+ GLYW +L +TE+ RF KF H E LWDE KIR+LY+ +AFGGTPH+ ++RA
Sbjct: 2 EYRLPQPIDAGKTHETSLQFLHENLINHLKQDGDKGRYDECPGKRYACGFPLPEFQRQAVWAPDQQQRFLHSVCVGIDIGTFNIHASEWDDNG-PVRFSGWLIDGQQRLTGLEMFWTNQMPLHGLYWDDLNRTERHRFLRTKFAHRESALWDEGKIRELYNLLAFGGTPHQANERA 176
BLAST of mRNA_Ecto-sp9_F_contig1.24.1 vs.
Match: DUF262 (domain-containing protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1J0S9I6_9ALTE) HSP 1 Score: 179 bits (455), Expect = 9.030e-52 Identity = 95/182 (52.20%), Postives = 115/182 (63.19%), Query Frame = 1
Query: 1 MESEKRIPKAIDLGQHRDTTVYFLKSTLDEHNSHAAEGKPLL-SGPADRYVCGFAIPEFQRPLVWTRDQEVAFIESVWLGLPLGTYTVHEMDWG--PGGKPYRFSGILIDGQQRLTTISRYWQDEFPVFGLYWSELTKTEQRRFYGAKFPHFEIELWDEAKIRDLYDRMAFGGTPHEEHQRA 537
M RIPK IDLG+ RD V + +H G PL + A+RY CGF +P FQRP VWT +Q+ FIES++LGL +GTY VHE DW K FSG L+DGQQRL TI Y D+F VF LY+S+LTK E RRF F E+ L DEAKI+DLY+R++FGGT H E QRA
Sbjct: 1 MSVNNRIPKPIDLGRTRDFRVEDAVISYRKHCEAVEAGLPLKRTVEAERYACGFPLPSFQRPAVWTTEQKAKFIESIFLGLHIGTYCVHESDWTGVAEAKIVPFSGWLLDGQQRLLTIEDYINDKFKVFDLYFSDLTKAEVRRFMNTPFKRHEVALHDEAKIKDLYNRLSFGGTAHTEDQRA 182
BLAST of mRNA_Ecto-sp9_F_contig1.24.1 vs.
Match: DUF262 (domain-containing protein n=1 Tax=Psychromonas sp. Urea-02u-13 TaxID=2058326 RepID=A0A2N0ZXY3_9GAMM) HSP 1 Score: 166 bits (421), Expect = 1.090e-46 Identity = 76/174 (43.68%), Postives = 112/174 (64.37%), Query Frame = 1
Query: 16 RIPKAIDLGQHRDTTVYFLKSTLDEHNSHAAEGKPLLSGPADRYVCGFAIPEFQRPLVWTRDQEVAFIESVWLGLPLGTYTVHEMDWGPGGKP------YRFSGILIDGQQRLTTISRYWQDEFPVFGLYWSELTKTEQRRFYGAKFPHFEIELWDEAKIRDLYDRMAFGGTPH 519
R+P+ DLG++ D++V + + ++H GK L S +D+YVCG+ +P FQRPL W+ +Q+VAFIESVW+ LP+G+ T+H +DW S +IDG QRL T+ ++ + + GLYWS+LT+ E+RRF KF H + LWDE+ ++DLY+RM FGGT H
Sbjct: 4 RLPQRADLGRNVDSSVEWYLNHYEKHLELLEAGKALDSSVSDQYVCGYPVPPFQRPLCWSNEQQVAFIESVWMELPIGSLTIHAVDWDEELNDELKCDVLPMSAWVIDGLQRLFTLQNFFDSKLKINGLYWSDLTRAEKRRFEQVKFTHNRVSLWDESIVKDLYNRMNFGGTNH 177
BLAST of mRNA_Ecto-sp9_F_contig1.24.1 vs.
Match: DUF262 (domain-containing protein n=3 Tax=Vibrio TaxID=662 RepID=A0A2N7NCV0_9VIBR) HSP 1 Score: 154 bits (389), Expect = 5.470e-42 Identity = 81/178 (45.51%), Postives = 107/178 (60.11%), Query Frame = 1
Query: 19 IPKAIDLGQHRDTTV---YFLKSTLDEHNSHAAEGKPLLSGPADRYVCGFAIPEFQRPLVWTRDQEVAFIESVWLGLPLGTYTVHEMDW-GPGGKPYRFSGILIDGQQRLTTISRYWQDEFPVFGLYWSELTKTEQRRFYGAKFPHFEIELWDEAKIRDLYDRMAFGGTPHEEHQRAS 540
IP+ LGQHR V +++ DE G + RYV G +P +QRP W Q+ IES++L L G Y ++ D+ G GKP +FSG L+DGQQR+TTI +Y DEF VFG YWSELTK E+RRF A F E+ +WDE ++R L DR+AFGGT H++ RA+
Sbjct: 3 IPQRQPLGQHRAFNVEHLVYIQKRSDEREC----------GWSKRYVMGLPLPAWQRPYEWDEVQQQRLIESIYLDLYHGVYVLNANDYEGSEGKPRKFSGALLDGQQRITTIEKYLNDEFKVFGAYWSELTKGEKRRFLNAPFNCIEVNIWDENELRQLSDRLAFGGTAHKDEYRAT 170
BLAST of mRNA_Ecto-sp9_F_contig1.24.1 vs.
Match: DUF262 (domain-containing protein n=1 Tax=Pseudoalteromonas sp. OFAV1 TaxID=2908892 RepID=UPI001F41780F) HSP 1 Score: 152 bits (384), Expect = 2.840e-41 Identity = 70/177 (39.55%), Postives = 104/177 (58.76%), Query Frame = 1
Query: 1 MESEKRIPKAIDLGQHRDTTVYFLKSTLDEHNSHAAEGKP--LLSGPADRYVCGFAIPEFQRPLVWTRDQEVAFIESVWLGLPLGT-YTVHEMDWGPGGKPYRFSGILIDGQQRLTTISRYWQDEFPVFGLYWSELTKTEQRRFYGAKFPHFEIELWDEAKIRDLYDRMAFGGTPHE 522
M +R P ID G+ + + +H + + P +DRY CGF IP+FQR W+ QEV FIES+ L LP+G Y VHE + G P ++SG L+DGQ RL ++ ++W ++FPVFG YW +LT+ EQ RF+ FP +++WD + +Y+++AFGG PH+
Sbjct: 1 MSLSERFPNRIDTGRSYQFDLETIYRNFQKHLTWLSNPTPENQTHDTSDRYTCGFPIPDFQREPCWSVAQEVKFIESLILQLPIGNDYIVHETGYNDDGSPAKYSGWLVDGQNRLLSLEKFWSNKFPVFGFYWKDLTRAEQLRFFKLPFPQRRLDVWDYDILNAIYEQLAFGGVPHK 177
BLAST of mRNA_Ecto-sp9_F_contig1.24.1 vs.
Match: DUF262 (domain-containing protein n=1 Tax=Vibrio coralliilyticus TaxID=190893 RepID=A0A7Y4BTW7_9VIBR) HSP 1 Score: 150 bits (379), Expect = 1.710e-40 Identity = 78/175 (44.57%), Postives = 103/175 (58.86%), Query Frame = 1
Query: 19 IPKAIDLGQHRDTTVYFLKSTLDEHNSHAAEGKPLLSGPADRYVCGFAIPEFQRPLVWTRDQEVAFIESVWLGLPLGTYTVHEMDW-GPGGKPYRFSGILIDGQQRLTTISRYWQDEFPVFGLYWSELTKTEQRRFYGAKFPHFEIELWDEAKIRDLYDRMAFGGTPHEEHQRAS 540
IP LGQHR + +L + + + R V G +P +QRP W Q+ FIES++L L G Y ++ D+ GP G P +FS L+DGQQR+TTI +Y DEF VFG WSELTK EQRRF + F E+ +WDE K+R+L DR+AFGGT H++ RAS
Sbjct: 3 IPPRQPLGQHRAFDIEYLLFCQKKAENRECSW-------SFRSVMGLPLPSWQRPYEWDEVQQQRFIESIYLDLYHGVYVLNAADYEGPDGSPKKFSNALLDGQQRITTIEKYLNDEFEVFGALWSELTKGEQRRFLNSPFHCMEVSIWDEDKLRELSDRLAFGGTAHKDEYRAS 170 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1.24.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1.24.1 >prot_Ecto-sp9_F_contig1.24.1 ID=prot_Ecto-sp9_F_contig1.24.1|Name=mRNA_Ecto-sp9_F_contig1.24.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=373bp MESEKRIPKAIDLGQHRDTTVYFLKSTLDEHNSHAAEGKPLLSGPADRYVback to top mRNA from alignment at Ecto-sp9_F_contig1:88009..89184+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1.24.1 ID=mRNA_Ecto-sp9_F_contig1.24.1|Name=mRNA_Ecto-sp9_F_contig1.24.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1176bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1:88009..89184+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1:88009..89184+ >mRNA_Ecto-sp9_F_contig1.24.1 ID=mRNA_Ecto-sp9_F_contig1.24.1|Name=mRNA_Ecto-sp9_F_contig1.24.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2238bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1:88009..89184+ (Ectocarpus species9 EcSCA_722f female)back to top |