mRNA_Ecto-sp9_F_contig1.23.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1.23.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5IC71_OSTTA) HSP 1 Score: 683 bits (1763), Expect = 5.450e-248 Identity = 350/353 (99.15%), Postives = 351/353 (99.43%), Query Frame = 1
Query: 1 MASSPFQMFDLLSRQVRRGIKAQQSPLTMSHSSKSLKQLAKGPNENLLKEFYKVLPGVSEILQQLVVAETDWNLSGRNILFPGSEDFYSRLLTSRFMIPEGENAQLNFPSAAFILAVPRDMTVNGYKIPSPMVTYSNTRDERIEQYRRVERVLNSGVSEEEFLRHETMYSCVSIFFHNPQDESDTTTTKLTLNLSQLADVLKIDMDAPDCLSHFEQIAARQKDSSALAMDMSHSDLYIQMVLMRLIVGLSVYISAAGESVLSDGIPKVTGIPTPGLDKHSKPTMRRIPAPSQTRNASTMDTPTTRRWHFRNLRADRYYQGDYASWPKGSRWTIVSEAQVGKYKATTVHDEETD 1059
MASSPFQMFDLLSRQVRRGIKAQQSPLTMSHSSKSLKQLAKGPNENLLK FYKVLPGVSEILQQLVVAETDWNLSGRNILFPGSEDFYSRLLTSRFMIPEGENAQLNFPSAAFILAVPRDMTVNGYKIPSPMVTYSNTRDERIEQYRRVERVLNSGVSEEEFLRHETMYSCVSIFFHNPQDESDTTTTKLTLNLSQLADVLKIDMDAPDCLSHFEQIAARQKDSSALAMDMSHSDLYIQM+LMRLIVGLSVYISAAGESVLSDGIPKVTGIPTPGLDKHSKPTMRRIPAPSQT NASTMDTPTTRRWHFRNLRADRYYQGDYASWPKGSRWTIVSEAQVGKYKATTVHDEETD
Sbjct: 1 MASSPFQMFDLLSRQVRRGIKAQQSPLTMSHSSKSLKQLAKGPNENLLKAFYKVLPGVSEILQQLVVAETDWNLSGRNILFPGSEDFYSRLLTSRFMIPEGENAQLNFPSAAFILAVPRDMTVNGYKIPSPMVTYSNTRDERIEQYRRVERVLNSGVSEEEFLRHETMYSCVSIFFHNPQDESDTTTTKLTLNLSQLADVLKIDMDAPDCLSHFEQIAARQKDSSALAMDMSHSDLYIQMILMRLIVGLSVYISAAGESVLSDGIPKVTGIPTPGLDKHSKPTMRRIPAPSQTLNASTMDTPTTRRWHFRNLRADRYYQGDYASWPKGSRWTIVSEAQVGKYKATTVHDEETD 353
BLAST of mRNA_Ecto-sp9_F_contig1.23.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudomonas putida TaxID=303 RepID=A0A8I1EH43_PSEPU) HSP 1 Score: 89.7 bits (221), Expect = 1.630e-16 Identity = 85/290 (29.31%), Postives = 129/290 (44.48%), Query Frame = 1
Query: 193 LVVAETDWNLSGRNILFPGSEDFYSRLLTSRFMIPEGENAQLNFPSAAFILAVPRDMTVNGYKIPSPMVTYSNTRDERIEQYRRVERVLNSGVSEEEFLR------HETMYSCVSIFFHNPQDESDTTTTKLTLNLSQLADVLK--IDMDAPDCLSHFEQIAARQKDSSALAMDMSHSDLYIQMVLMRLIVGLSVYISAAGESVLSDGIP-----KVTGIPTPGLDKHSKPTMRRIPAPSQTRNASTMDTPTTRRWHFRNLRADRYYQGDYASWPKGSRWTIVSEAQVGK 1023
+ AE W +G N +FP S + LL +RF + E L F S F+L+VP+ V+G KIPS +V+ + E V+ + F + ET V+I S T + +++SQ+ +L + + D L + + + +S DL IQ +++RL+ + +Y A L G+P K+ G G K S T P R S R W FR LRADRYY+G+YAS+ KGSR+ VS++ VG+
Sbjct: 58 IFAAEHFWIRTGANAIFPESAEVLDNLLRARFQMDAAEGFTLPFES--FMLSVPQGYAVDGVKIPSFIVSC-------FPYQKMAETVIGPFLQYAGFKKPVAVSLDETSEDDVAIALCYKDPTSKTAYARTLVSVSQIPSILANTSNSELSDELGEYSEYLD--------VVGLSEYDLKIQRIMLRLVAAIGIYNMATEGKRLLPGLPGTQEPKIIGKAPSGGFKFSTLTNSFPPL----REGSAPADAYYRTWFFRQLRADRYYKGEYASYAKGSRYVFVSDSIVGQ 326
BLAST of mRNA_Ecto-sp9_F_contig1.23.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudomonas putida TaxID=303 RepID=A0A8I1ECP1_PSEPU) HSP 1 Score: 87.4 bits (215), Expect = 1.030e-15 Identity = 87/320 (27.19%), Postives = 146/320 (45.62%), Query Frame = 1
Query: 130 NENLLKEFYKVLPGVSEILQQLVVAETD-WNLSGRNILFPGSEDFYSRLLTSRFMIPEGENAQLNFPSAAFILAVPRDMTVNGYKIPSPMVTYSNTRDER----IEQYRRVERVLNSGVSEEEFLRHETMYSCVSIFFHNPQDESDTTTTKLTLNLSQLADVLKIDMDAPDCLSHFEQIAARQKDSSALAMDMSHSDLYIQMVLMRLIVGLSVYISAAGESVLSDGIPKVTGIPTPGLDKHSKPTMRRIPAPSQTRNASTMDTPTTR-----RWHFRNLRADRYYQGDYASWPKGSRWTIVSEAQVGKYKATTVHDEETD 1059
+ ++L+ + P + L L+++E W G +++FP S LL +++ + E +L P +AF +A+P NG ++ MVT+ + R + + R++ G E R E M +SI F +P T + QL + L + + ++Q+ +D + +D++ S+L Q + ++L+ L VY A LSDG P G P ++ K R S RN + +D R W FR LRADRYYQG++ P+GSR++ VS+ VG+ T H + D
Sbjct: 37 DNDILRVLMESNPAMMHSLNFLILSEEFYWKSQGGDVIFPESPAVLDNLLRAKYQMDSPEGFRL--PFSAFSVAIPNGYAFNGVRLLPFMVTFIHHRTAQDITTLPFCRKIGLREPPGFGYAES-RPEAM--ALSITFRDP------TNRHAYIRTLQLDEALPRVLKCQTAME-YKQVVGDYEDKFGV-IDLTESELEAQFLAVKLVAALGVYHMATNGDRLSDGYP---GSQEPRMNNRDKSLRMRF---STLRNKADVDAIEARDAFYRTWFFRQLRADRYYQGEHEKTPRGSRYSFVSDTVVGQ--KVTPHTQRDD 335
BLAST of mRNA_Ecto-sp9_F_contig1.23.1 vs.
Match: Uncharacterized (protein n=2 Tax=Pseudomonas sp. Leaf58 TaxID=1736226 RepID=A0A0Q4N1J1_9PSED) HSP 1 Score: 67.8 bits (164), Expect = 3.900e-9 Identity = 83/305 (27.21%), Postives = 129/305 (42.30%), Query Frame = 1
Query: 139 LLKEFYKVLPGVSEILQQLVVAETDWNLSGRN-ILFPGSEDFYSRLLTSRFMIPEGENAQLNFPSAAFILAVPRDMTVNGYKIPSPMVTY---SNTRDERIEQYRRVERVLNSGVSEEEFLRHETMYSCVSIFFHNPQDESDTTTTKLTLNLSQLADVLKIDMDAPDCLSHFEQIAARQKDSSALAM-DMSHSDLYIQMVLMRLIVGLSVYISAAGESVLSDGIPKVTGIPTPGLDKHSKP---TMRRIPAPSQTRNASTMDTPTT---RRWHFRNLRADRYYQGDYASWPKGSRWTIVSEAQVG 1020
+L +F + P + ++AE + S + ++FP S LL +R+ + E + FPS FILA PR G +IPS +V++ +DE + + +V VS E + +S+ + + E T+ Q VL + A + ++ E + ++ LA D+S SD IQ ++LI L VY A + L G P G K T+ P + D T R WHFR LR +RYY+G+YA G+R+ V A VG
Sbjct: 1 MLSDFIRRQPDIQNDHAFYIMAEELFLQSHNSQVIFPESSLVLDNLLKARYSLSSSEGLDMPFPS--FILAPPRGYAFKGIEIPSLLVSWVIGDGFKDEVLRPFLDYIKVPGDRVSFSELPQD----GILSLIYRDKTGECSR-----TVIYGQNIPVL---LGAKNPQAYREAMVSQ---GLILAQEDLSESDSDIQFYSLKLIAALGVYHVATQGNKLKQGFPTPQAPRMEGRRAEQKVAPVTLVNSTPPLANSESVRHDAGRTAHYRAWHFRQLRDERYYRGEYAHHAPGTRYIFVESALVG 288
BLAST of mRNA_Ecto-sp9_F_contig1.23.1 vs.
Match: Uncharacterized (protein n=2 Tax=Pseudomonas sp. FFUP_PS_41 TaxID=2060417 RepID=A0A2N5B769_9PSED) HSP 1 Score: 67.0 bits (162), Expect = 8.570e-9 Identity = 80/309 (25.89%), Postives = 132/309 (42.72%), Query Frame = 1
Query: 118 AKGPNENLLKEFYKVLPGVSEILQQLVVAET-DWNLSGRNILFPGSEDFYSRLLTSRFMIPEGENAQLNFPSAAFILAVPRDMTVNGYKIPSPMVTYSNTRDERIEQYRRVERVLNSGVSEEEF-LRHETMYSCVSIFFHNPQDESDTTTTKLTLNLSQLADVLKIDMDAPDCLSHFEQIAARQKDSSALAMDMSHSDLYIQMVLMRLIVGLSVYISAAGESVLSDGIPKVTGIPTPGLD------KHSKPTMRRIPAPSQTRNASTMDTPTTRRWHFRNLRADRYYQGDYASWPKGSRWTIVSEAQVG 1020
AK ++ L+ + ++ ++ ++ E + G ++FP S LL +R+ + + N P +F+LAVPR NG+ +P +VT IE + V F L T+ +SI + +P + L+L + VL+ +P F +D SA MS + I+ +L++ L VY +A L G P TP LD + S T+ PS + + + R W FR LRADRYY+G+++ + G+R++ VSE VG
Sbjct: 23 AKSTDKELMADVIRMAANKNDGQSPYILCEEFKFRRQGSQVIFPESPVILDNLLRARYSVETVDG--FNLPFESFMLAVPRGYAHNGFLVPGLLVTVIKLHS--IEPDLLHPLLDEYDVPRATFKLTDHTVSDMLSIVYTDPGSSEK---CRAFLSLRDIPAVLQT--RSPSDYRDFMFSKGFLRDKSA----MSDHNSAIEFNAFKLVLALGVYHAATRGDKLHAGFPAGD---TPRLDGWKPGRELSPVTLTSSIPPSA--DGTIVKDAFYRTWFFRQLRADRYYKGEFSHYAPGTRYSFVSETVVG 313
BLAST of mRNA_Ecto-sp9_F_contig1.23.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudomonas putida TaxID=303 RepID=A0A8I1EBL3_PSEPU) HSP 1 Score: 66.6 bits (161), Expect = 1.230e-8 Identity = 81/306 (26.47%), Postives = 129/306 (42.16%), Query Frame = 1
Query: 130 NENLLKEFYKVLPGV-SEILQQLVVAETDWNLSGRNILFPGSEDFYSRLLTSRFMIPEGENAQLNFPSAAFILAVPRDMTVNGYKIPSPMVTYSNTRDERIEQYRRVERVLNSGVSEEEFLRHETMYS------CVSIFFHNPQDESDTTTTKLTLNLSQLADVLKIDMDAPDCLSHFEQIAARQKDSSALAMDMSHSDLYIQMVLMRLIVGLSVYISAAGESVLSDGIPKVTGIPTPGLD-KHSKPTMRRIPAPSQTRNASTMDTPTT-RRWHFRNLRADRYYQGDYASWPKGSRWTIVSEAQVG 1020
++ +L+ F + P + S+ ++ E G ++FP + LL +RF + E L P +F+LA+PR NG ++PS +VT+ RD + VL + + + +T Y +SI F + + ++ + L +L PD KDS A M ++ Q MRL+ L VY A L G P P +D + S ++ + S+ D R WHFR LR +RYY+G+Y P+GSR+ VSEA +G
Sbjct: 36 DQAVLQRFARRSPDLTSDHAFYIMAEELHLKNQGSQVIFPDTGMVLDNLLKARFSMETHEGFTL--PYRSFLLAMPRGYKFNGLQLPSLLVTWVPGRDFSSD-------VLAPFLKQLGVVEGKTRYEDLPDMGLLSIVFLDRDAKG--ARSRSVIYGEDLPHLLGA--KNPDQFHSQMVRLGILKDSDA----MDAAEAATQFYSMRLVASLGVYHLATEGKHLKPGFPSSQA---PRMDGRRSDQPVKPLTLTSKINFDDAADKQAHFRSWHFRQLRDERYYRGEYRDHPQGSRYVFVSEAVIG 321
BLAST of mRNA_Ecto-sp9_F_contig1.23.1 vs.
Match: Uncharacterized (protein n=4 Tax=Pseudomonas TaxID=286 RepID=A0A241XRN5_PSEAI) HSP 1 Score: 65.9 bits (159), Expect = 2.140e-8 Identity = 75/295 (25.42%), Postives = 117/295 (39.66%), Query Frame = 1
Query: 169 GVSEILQQLVVAETDWNLSGRNILFPGSEDFYSRLLTSRFMIPEGENAQLNFPSAAFILAVPRDMTVNGYKIPSPMVTYSNTRDERIEQYRRVERVLNSGVSEEEFLRHETMYS-------CVSIFFHNPQDESDTTTTKLTLNLSQLADVLKIDMDAPDCLSHFE-QIAARQKDSSALAMDMSHSDLYIQMVLMRLIVGLSVYISAAGESVLSDGIPK--VTGIPTPGLDKHSKPTMRRIPAPSQTRNASTMDTPTTRRWHFRNLRADRYYQGDYASWPKGSRWTIVSEAQVGK 1023
GV ++ E W L LFP S D L T+ F + +L F S FILA+P + G +PS +VT+ + +RHE +Y+ C S + + E + + S + L + D P LS R+ + + +S ++ IQ ++L+ + VY A L+ G P+ I G D+ + P + D+ R W FR LRA RYY+G+Y+ GSR+T+V A VG+
Sbjct: 51 GVGSNTWMVLAEEHFWGLQEAVTLFP-SHDLLGNLRTAHFRMDSSAGYELPFES--FILALPLGFEIGGVALPSLLVTWLTDQ-----------------------VRHEHVYAELCRYAGCGSRAYSGQKPEERWLSITYRADESSYSRTLLCEHDLPSLLSSRSLDDFKREVGKYSGGISLSDTEAAIQYQALKLVGAIGVYNLATDGDKLAPGFPEGSTPKIEGKGADQRLTSYHLQNAIPVVVADREVADS-YYRGWFFRQLRAARYYKGEYSRRAVGSRYTLVGPAVVGQ 318
BLAST of mRNA_Ecto-sp9_F_contig1.23.1 vs.
Match: hypothetical (protein n=1 Tax=Vibrio crassostreae TaxID=246167 RepID=UPI001B31839E) HSP 1 Score: 64.3 bits (155), Expect = 7.310e-8 Identity = 67/277 (24.19%), Postives = 118/277 (42.60%), Query Frame = 1
Query: 193 LVVAETDWNLSG-RNILFPGSEDFYSRLLTSRFMIPEGENAQLNFPSAAFILAVPRDMTVNGYKIPSPMVTY--SNTRDE-RIEQYRRVERVLNSGVSEEEFLRHETMYSCVSIFFHNPQDESDTTTTKLTLNLSQLADVLKIDMDAPDCLSHFEQIAARQKDSSALAMDMSHSDLYIQMVLMRLIVGLSVYISAAGESVLSDGIPKVTGIPTPGLDK-HSKPTMRRIPAPSQTRNASTMDTPTTRRWHFRNLRADRYYQGDYASWPKGSRWTIVSE 1008
L + ET W + G R +F E L + + +N P +F +++P+ ++G ++ +V++ +T D + + R++ S + E + + +F H D DT +T ++S+ + DA H + + K +A + +L + L +Y S+ E V+ +G P+V P G +K H KP N R H+RNLRA+R+YQG+Y+ W +GSRW VS+
Sbjct: 70 LAMDETFWIMEGKRTTVFLDDERLTKTLYDAEINFKT--DCSVNIPFHSFCISLPKGTVIDGVEVEPFLVSFFKPSTYDTINQKHFNGSTRLIGSEILREHTNFPDDFLISIKVFNHE-LDSYDT----ITSDVSRAIFDISTSPDASMTSKHKKSLEETGKGYNAY-------------ITTKLALALLIYNSSQSEPVIVEGYPEVEVKPPEGTNKTHYKPFTLTGKGIDMGNNLHRQKV-VRRVAHWRNLRAERFYQGEYSKWDRGSRWVFVSQ 325
BLAST of mRNA_Ecto-sp9_F_contig1.23.1 vs.
Match: hypothetical (protein n=1 Tax=Shewanella sp. KX20019 TaxID=2803864 RepID=UPI001926A879) HSP 1 Score: 63.2 bits (152), Expect = 1.310e-7 Identity = 70/263 (26.62%), Postives = 115/263 (43.73%), Query Frame = 1
Query: 223 SGRNILFPGSEDFYSRLLTSRFMIPEGENAQLNFPSAAFILAVPRDMTVNGYKIPSPMVTYSNTRDERIEQYRRVERVLNSGVSEEEFLRHETMYSCVSIFFHNPQDESDTTTTKLTLNLSQLADVLKIDMDAPDCLSHFEQIAARQKDSSALAMDMSHSDLYIQMVLMRLIVGLSVYISAAGESVLSDGIPKVTGIPTPGLDKHSKPTMRRIPAPSQT-RNASTMDTPTTRRWHFRNLRADRYYQGDYASWPKGSRWTIVSE 1008
+GRNI+FP S + ++ SRF I EG N ++FP +F++A+PRD + P++ ++ R EQ ++ G +E+ + +S+ + + D++D + L N D P L ++K ++A D ++ L +Y SA G + +G P+ + P KHSK T N +D + HFRNL+ R+Y G Y+ GSRWT+VSE
Sbjct: 63 TGRNIIFPESNELIKSIMESRFDISEGFN--ISFPFNSFVIAMPRDSYIK------PLLVSFIDKETRAEQVNKL------GFNEDAAI--------LSVLYRD--DKNDVIKSVLKKN------------DVPKILDSKNFYDFQEKYTTANIQDSKLKSCEHMFNAVKFACSLMIYHSACGG--MMEGFPEWDRVRFP---KHSKKIDYSGHVIVDTISNDDCLDVVNVKP-HFRNLKDPRFYTGIYSDIEPGSRWTLVSE 283
BLAST of mRNA_Ecto-sp9_F_contig1.23.1 vs.
Match: hypothetical (protein n=1 Tax=Vibrio furnissii TaxID=29494 RepID=UPI001EEAC56B) HSP 1 Score: 60.8 bits (146), Expect = 9.320e-7 Identity = 48/143 (33.57%), Postives = 73/143 (51.05%), Query Frame = 1
Query: 661 QKDSSALAMDMSHSDLYIQM----------VLMRLIVGLSVYISAAGESVLSDGIPKVTG--IPTPGLDKHSKPTMRRIPAPSQTRNASTMDTPTTRRWHFRNLRADRYYQGDYASWPKGSRWTIVSEAQVGKYKATTVHDEE 1053
+K ++ L + SD+Y Q + MR+ V L ++ +A L DG P+ + +P + + K + PS AS + R HFRNLRADRYY G+YA+ KGSRWT+VSE+ +G + T + E+
Sbjct: 182 EKITNGLELSKELSDIYDQSLNDKEQLQTNIQMRIAVQLLIFNAATENKYLVDGFPEQSKFQLPVNTIKTYWKASHFNY-KPSNQSIASHI-----RSAHFRNLRADRYYTGEYANLEKGSRWTLVSESFIGGNETYTQNIED 318 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1.23.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1.23.1 >prot_Ecto-sp9_F_contig1.23.1 ID=prot_Ecto-sp9_F_contig1.23.1|Name=mRNA_Ecto-sp9_F_contig1.23.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=354bp MASSPFQMFDLLSRQVRRGIKAQQSPLTMSHSSKSLKQLAKGPNENLLKEback to top mRNA from alignment at Ecto-sp9_F_contig1:84690..85751+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1.23.1 ID=mRNA_Ecto-sp9_F_contig1.23.1|Name=mRNA_Ecto-sp9_F_contig1.23.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1062bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1:84690..85751+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1:84690..85751+ >mRNA_Ecto-sp9_F_contig1.23.1 ID=mRNA_Ecto-sp9_F_contig1.23.1|Name=mRNA_Ecto-sp9_F_contig1.23.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2124bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1:84690..85751+ (Ectocarpus species9 EcSCA_722f female)back to top |