mRNA_Ecto-sp9_F_contig1.17.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1.17.1
Unique NamemRNA_Ecto-sp9_F_contig1.17.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1.17.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5I5C5_OSTTA)

HSP 1 Score: 370 bits (949), Expect = 1.980e-129
Identity = 174/188 (92.55%), Postives = 182/188 (96.81%), Query Frame = 1 
Query:    1 MRATEFTYKHKRLDHDEWLRLAKLLEIMVNRGVAGPGALVTASAFHDGNSMKWSHAQPIKGEALDCVRDVLDQAAIVFNGPKDQSGDWFCITCEGTNEFRTCRTHEHEYGVYVAAMLLLGMHISPDKWEVPNGVFGGLWLSAQALISNTIGIDAKIPAHLCRPVKAKRPRKADLLAEIARPDRLDFRV 564
            MRATEFTYKHKRLDHDEWLRLAKLLEIMVNRGVAGPGALVTASAFHDGNSMKWS AQPIKGEALDCVRDVLDQAAIVFNGPKD++GDWF ITCEGT+EFRTC+THEHEYG+YVAAMLLLGMHISPDKWEVP+GVFGGLWLSAQALISNTIGIDAKIPAHLCRPVKAKRPRK DL+AEIARP  LD+R 
Sbjct:    1 MRATEFTYKHKRLDHDEWLRLAKLLEIMVNRGVAGPGALVTASAFHDGNSMKWSQAQPIKGEALDCVRDVLDQAAIVFNGPKDENGDWFFITCEGTDEFRTCQTHEHEYGIYVAAMLLLGMHISPDKWEVPSGVFGGLWLSAQALISNTIGIDAKIPAHLCRPVKAKRPRKIDLVAEIARPHWLDYRA 188
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1.17.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.980e-12992.55protein n=1 Tax=Ostreococcus tauri TaxID=70448 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1contigEcto-sp9_F_contig1:73917..74483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size567
Cds size567
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928187.5735471-CDS-Ecto-sp9_F_contig1:73916..744831622928187.5735471-CDS-Ecto-sp9_F_contig1:73916..74483Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1 73917..74483 +
1692277785.2533073-CDS-Ecto-sp9_F_contig1:73916..744831692277785.2533073-CDS-Ecto-sp9_F_contig1:73916..74483Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1 73917..74483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1.17.1prot_Ecto-sp9_F_contig1.17.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1 73917..74483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1.17.1

>prot_Ecto-sp9_F_contig1.17.1 ID=prot_Ecto-sp9_F_contig1.17.1|Name=mRNA_Ecto-sp9_F_contig1.17.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=189bp
MRATEFTYKHKRLDHDEWLRLAKLLEIMVNRGVAGPGALVTASAFHDGNS
MKWSHAQPIKGEALDCVRDVLDQAAIVFNGPKDQSGDWFCITCEGTNEFR
TCRTHEHEYGVYVAAMLLLGMHISPDKWEVPNGVFGGLWLSAQALISNTI
GIDAKIPAHLCRPVKAKRPRKADLLAEIARPDRLDFRV*
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mRNA from alignment at Ecto-sp9_F_contig1:73917..74483+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1.17.1 ID=mRNA_Ecto-sp9_F_contig1.17.1|Name=mRNA_Ecto-sp9_F_contig1.17.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=567bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1:73917..74483+ (Ectocarpus species9 EcSCA_722f female)
ATGCGAGCGACGGAATTCACCTACAAGCACAAGCGGCTGGACCATGATGA
GTGGCTGCGTCTTGCCAAGCTTCTTGAAATCATGGTAAATCGAGGCGTAG
CCGGTCCCGGGGCCCTTGTGACGGCCTCAGCCTTTCACGATGGTAACTCG
ATGAAATGGAGCCACGCTCAACCTATAAAGGGTGAAGCTCTGGATTGTGT
CCGGGATGTGCTCGATCAAGCCGCGATTGTTTTCAATGGTCCCAAGGATC
AAAGCGGCGACTGGTTCTGCATCACCTGCGAAGGCACTAACGAATTCAGA
ACGTGCCGGACTCATGAGCATGAATACGGCGTCTATGTGGCAGCGATGCT
GCTACTTGGGATGCATATCTCACCGGACAAGTGGGAGGTTCCCAATGGGG
TTTTTGGCGGGCTTTGGCTGTCGGCACAAGCGCTGATCTCAAACACCATC
GGGATCGATGCCAAGATACCAGCGCACCTGTGTCGGCCGGTTAAGGCCAA
GCGGCCCCGGAAGGCTGATCTGTTGGCTGAGATAGCCAGACCAGACCGGC
TTGATTTCAGAGTATGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1:73917..74483+

>mRNA_Ecto-sp9_F_contig1.17.1 ID=mRNA_Ecto-sp9_F_contig1.17.1|Name=mRNA_Ecto-sp9_F_contig1.17.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1134bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1:73917..74483+ (Ectocarpus species9 EcSCA_722f female)
ATGCGAGCGACGGAATTCACCTACAAGCACAAGCGGCTGGACCATGATGA
GTGGCTGCGTCTTGCCAAGCTTCTTGAAATCATGGTAAATCGAGGCGTAG
CCGGTCCCGGGGCCCTTGTGACGGCCTCAGCCTTTCACGATGGTAACTCG
ATGAAATGGAGCCACGCTCAACCTATAAAGGGTGAAGCTCTGGATTGTGT
CCGGGATGTGCTCGATCAAGCCGCGATTGTTTTCAATGGTCCCAAGGATC
AAAGCGGCGACTGGTTCTGCATCACCTGCGAAGGCACTAACGAATTCAGA
ACGTGCCGGACTCATGAGCATGAATACGGCGTCTATGTGGCAGCGATGCT
GCTACTTGGGATGCATATCTCACCGGACAAGTGGGAGGTTCCCAATGGGG
TTTTTGGCGGGCTTTGGCTGTCGGCACAAGCGCTGATCTCAAACACCATC
GGGATCGATGCCAAGATACCAGCGCACCTGTGTCGGCCGGTTAAGGCCAA
GCGGCCCCGGAAGGCTGATCTGTTGGCTGAGATAGCCAGACCAGACCGGC
TTGATTTCAGAGTATGAATGCGAGCGACGGAATTCACCTACAAGCACAAG
CGGCTGGACCATGATGAGTGGCTGCGTCTTGCCAAGCTTCTTGAAATCAT
GGTAAATCGAGGCGTAGCCGGTCCCGGGGCCCTTGTGACGGCCTCAGCCT
TTCACGATGGTAACTCGATGAAATGGAGCCACGCTCAACCTATAAAGGGT
GAAGCTCTGGATTGTGTCCGGGATGTGCTCGATCAAGCCGCGATTGTTTT
CAATGGTCCCAAGGATCAAAGCGGCGACTGGTTCTGCATCACCTGCGAAG
GCACTAACGAATTCAGAACGTGCCGGACTCATGAGCATGAATACGGCGTC
TATGTGGCAGCGATGCTGCTACTTGGGATGCATATCTCACCGGACAAGTG
GGAGGTTCCCAATGGGGTTTTTGGCGGGCTTTGGCTGTCGGCACAAGCGC
TGATCTCAAACACCATCGGGATCGATGCCAAGATACCAGCGCACCTGTGT
CGGCCGGTTAAGGCCAAGCGGCCCCGGAAGGCTGATCTGTTGGCTGAGAT
AGCCAGACCAGACCGGCTTGATTTCAGAGTATGA
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