mRNA_Ecto-sp9_F_contig1.16.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1.16.1
Unique NamemRNA_Ecto-sp9_F_contig1.16.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1.16.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5IBW5_OSTTA)

HSP 1 Score: 501 bits (1291), Expect = 2.410e-179
Identity = 244/253 (96.44%), Postives = 247/253 (97.63%), Query Frame = 1
Query:    1 GEHHHFRLYCPLKLLRGLFMELAARPIMHRGNLFRSVTEFRWAHFFETLGIIYLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHLETGEPVLILSGNPSAESFHEGLLPNGFGLHVISHHFDDYMISFAPTEVYLFLKDLPSSAGNRICSILLLGLVQSKYAGVHPSKSIQEITDQFLRSLDAKYRYQAQRELNRAKEVSMPADNEVAIRQLINTAWQANIPHDFFQKLIHKVTKHPE 759
            GEHHHFRLYCPLKLLRGLFMELAARPIMHRGNLFRSVTEFRWAHFFE LGI YLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHLETGEPVLILSGNPSAESFHEGLLPNGFGLHVISHHFDDYMISFAPTEVYLFLKDLPSSAGNRICSILLLGLVQSKYA VHPSKSIQEI DQFLRSLDAKYRYQAQRELNRAKEV+MPADNEVAIRQLIN AWQAN+P DFFQKL+HKVTKHPE
Sbjct:    5 GEHHHFRLYCPLKLLRGLFMELAARPIMHRGNLFRSVTEFRWAHFFEALGITYLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHLETGEPVLILSGNPSAESFHEGLLPNGFGLHVISHHFDDYMISFAPTEVYLFLKDLPSSAGNRICSILLLGLVQSKYADVHPSKSIQEIADQFLRSLDAKYRYQAQRELNRAKEVAMPADNEVAIRQLINAAWQANVPPDFFQKLVHKVTKHPE 257          
BLAST of mRNA_Ecto-sp9_F_contig1.16.1 vs.
Match: Uncharacterized (protein n=3 Tax=Pseudomonas TaxID=286 RepID=A0A2A3LVV2_PSEDL)

HSP 1 Score: 86.3 bits (212), Expect = 8.450e-17
Identity = 47/95 (49.47%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   85 HRGNLFRSVTEFRWAHFFETLGIIYLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHLETGEPVLILSGNPSAESFHEGLL 369
            H+G   RS TE  WA   E  GI YLYE       +  YLPDF+LPN+  ++EVKG+ PTEEEI K  AV   TG  V+ L G P  ES  EGL+
Sbjct:   10 HQGYRLRSYTELLWARVLEAAGIFYLYEPDLVRVDDGYYLPDFWLPNVGIYLEVKGKSPTEEEIQKADAVMARTGREVMFLVGRP--ESDREGLM 102          
BLAST of mRNA_Ecto-sp9_F_contig1.16.1 vs.
Match: hypothetical (protein n=1 Tax=Alteromonas antoniana TaxID=2803813 RepID=UPI001C436E31)

HSP 1 Score: 88.2 bits (217), Expect = 2.880e-16
Identity = 47/103 (45.63%), Postives = 66/103 (64.08%), Query Frame = 1
Query:   25 YCPLKLLRGLFMELAARPIMHRGNLFRSVTEFRWAHFFETLGIIYLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHLETGEPVLILSG 333
            Y P++  RG +   A +P +++G LFRS  E ++A+FF+ +G+ + YE+  F+T    YLPDFYLP L  W+EVKG  PT+ E  K   V  ETG P L+LSG
Sbjct:  311 YQPVQNERGGY---APQPTVYQGLLFRSRLEAKYAYFFDKMGLEWRYETEFFSTRHGYYLPDFYLPALNAWVEVKGTLPTQTETDKLADVVKETGRPGLVLSG 410          
BLAST of mRNA_Ecto-sp9_F_contig1.16.1 vs.
Match: Uncharacterized (protein n=9 Tax=Pseudomonas TaxID=286 RepID=V8R4K3_9PSED)

HSP 1 Score: 83.6 bits (205), Expect = 8.540e-16
Identity = 47/101 (46.53%), Postives = 57/101 (56.44%), Query Frame = 1
Query:   85 HRGNLFRSVTEFRWAHFFETLGIIYLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHLETGEPVLILSGNPSAES---FHEGLLPNG 378
            H G   RS TE  WA   E  GI YLYE       E  YLPDF+LPN+  ++EVKG+ PT EEI K  AV   TG+ V+ L G P ++    F+ GLL  G
Sbjct:   10 HNGYRLRSYTELMWARLLEASGIFYLYEPDLVRVDEGYYLPDFWLPNVGIYLEVKGKEPTPEEIQKADAVMARTGKEVMFLIGLPESDRGGLFNCGLLMRG 110          
BLAST of mRNA_Ecto-sp9_F_contig1.16.1 vs.
Match: Uncharacterized (protein (Fragment) n=4 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A2N5B5Y2_9PSED)

HSP 1 Score: 82.0 bits (201), Expect = 3.070e-15
Identity = 46/98 (46.94%), Postives = 55/98 (56.12%), Query Frame = 1
Query:   85 HRGNLFRSVTEFRWAHFFETLGIIYLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHLETGEPVLILSGNPSAESFHEGLLPNG 378
            H G   RS TE  WA   E   I YLYE       E  YLPDF+LPN+  ++EVKG+ PTEEEI K  AV   TG  V+ L G P ++   EGL+  G
Sbjct:    8 HNGYRLRSYTELLWARVLEAAEIFYLYEPDLVRVDEGYYLPDFWLPNVGIYLEVKGKNPTEEEIQKADAVMERTGREVMFLVGRPQSDR--EGLMNCG 103          
BLAST of mRNA_Ecto-sp9_F_contig1.16.1 vs.
Match: Uncharacterized (protein n=3 Tax=Pseudomonas TaxID=286 RepID=A0A3G7U2P9_9PSED)

HSP 1 Score: 82.0 bits (201), Expect = 3.190e-15
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 1
Query:   85 HRGNLFRSVTEFRWAHFFETLGIIYLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHLETGEPVLILSGNPSAE 348
            H+G   RS TE  WA   E   I YLYE       +  YLPDF+LPN+  ++EVKG +PTEEE+ K  AV   TG  V+ L G P ++
Sbjct:   10 HQGYRLRSYTELLWARVLEAADIFYLYEPDLVRVDDGFYLPDFWLPNVGIYVEVKGDWPTEEEVRKADAVMARTGREVVFLCGKPESD 97          
BLAST of mRNA_Ecto-sp9_F_contig1.16.1 vs.
Match: Uncharacterized (protein n=8 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A7X3JQV8_9PSED)

HSP 1 Score: 81.3 bits (199), Expect = 6.150e-15
Identity = 44/99 (44.44%), Postives = 53/99 (53.54%), Query Frame = 1
Query:   85 HRGNLFRSVTEFRWAHFFETLGIIYLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHLETGEPVLILSGNPSAESFHEGLLPNGF 381
            H G   RS TE  W    E  GI YLYE       +  YLPDF+LPN+  ++EVKG+ PT EEI K  AV   TG  V+ L G P A+    G+   GF
Sbjct:   10 HEGYRLRSYTELMWVKVMEASGIFYLYEPDLVRVDDGYYLPDFWLPNVGVYLEVKGKAPTSEEIQKAEAVMARTGREVIFLVGLPQADD--RGICNCGF 106          
BLAST of mRNA_Ecto-sp9_F_contig1.16.1 vs.
Match: hypothetical (protein n=1 Tax=Pseudomonas fluorescens TaxID=294 RepID=UPI0005FC1210)

HSP 1 Score: 80.5 bits (197), Expect = 1.190e-14
Identity = 40/89 (44.94%), Postives = 50/89 (56.18%), Query Frame = 1
Query:   85 HRGNLFRSVTEFRWAHFFETLGIIYLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHLETGEPVLILSGNPSAES 351
            H G   RS TE  WA   E   I YLYE       +  YLPDF+LPN+  ++EVKG  PTEEE+ K  AV   TG  V+ L G P +++
Sbjct:   10 HNGYRLRSYTELLWARVLEAADIFYLYEPDLIRVDDGFYLPDFWLPNVGIYVEVKGGLPTEEEVQKADAVMERTGREVVFLCGKPESDT 98          
BLAST of mRNA_Ecto-sp9_F_contig1.16.1 vs.
Match: hypothetical (protein n=2 Tax=Pseudomonas TaxID=286 RepID=UPI000BA2B4CF)

HSP 1 Score: 80.5 bits (197), Expect = 1.190e-14
Identity = 41/88 (46.59%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   85 HRGNLFRSVTEFRWAHFFETLGIIYLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHLETGEPVLILSGNPSAE 348
            H G   RS TE  WA   E  G+ YLYE       E  YLPDF+LPN+  ++EVKG+ PT EEI K  AV   TG+ V  L G P ++
Sbjct:   10 HNGYRLRSYTELMWARLLEASGLFYLYEPDLVRVDEGFYLPDFWLPNVGVYLEVKGKEPTPEEIQKADAVMARTGKEVFFLVGLPESD 97          
BLAST of mRNA_Ecto-sp9_F_contig1.16.1 vs.
Match: Uncharacterized (protein n=2 Tax=unclassified Pseudomonas TaxID=196821 RepID=A0A2V2T352_9PSED)

HSP 1 Score: 80.1 bits (196), Expect = 1.900e-14
Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = 1
Query:   85 HRGNLFRSVTEFRWAHFFETLGIIYLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHLETGEPVLILSGNPSAES 351
            H+G   RS TE  WA   + L I YLYE          YLPDFYLP+   ++EVKG  PT+ E AK   VH  TG PV+ L   P +++
Sbjct:   10 HQGYKLRSYTELMWARLMDALDIFYLYEPHLLQVEGCKYLPDFYLPSADMYLEVKGTRPTDIEKAKAEQVHTTTGRPVVFLVSRPQSDT 98          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1.16.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.410e-17996.44protein n=1 Tax=Ostreococcus tauri TaxID=70448 Rep... [more]
Uncharacterized8.450e-1749.47protein n=3 Tax=Pseudomonas TaxID=286 RepID=A0A2A3... [more]
hypothetical2.880e-1645.63protein n=1 Tax=Alteromonas antoniana TaxID=280381... [more]
Uncharacterized8.540e-1646.53protein n=9 Tax=Pseudomonas TaxID=286 RepID=V8R4K3... [more]
Uncharacterized3.070e-1546.94protein (Fragment) n=4 Tax=Pseudomonadaceae TaxID=... [more]
Uncharacterized3.190e-1545.45protein n=3 Tax=Pseudomonas TaxID=286 RepID=A0A3G7... [more]
Uncharacterized6.150e-1544.44protein n=8 Tax=Pseudomonadaceae TaxID=135621 RepI... [more]
hypothetical1.190e-1444.94protein n=1 Tax=Pseudomonas fluorescens TaxID=294 ... [more]
hypothetical1.190e-1446.59protein n=2 Tax=Pseudomonas TaxID=286 RepID=UPI000... [more]
Uncharacterized1.900e-1443.82protein n=2 Tax=unclassified Pseudomonas TaxID=196... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1contigEcto-sp9_F_contig1:73034..73795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score73.2
Seed ortholog evalue2e-10
Seed eggNOG ortholog439375.Oant_1781
EggNOG OGs1NPBX@1224,28NEI@1,2ZBH3@2
Best tax levelProteobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size762
Cds size762
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928187.5421915-CDS-Ecto-sp9_F_contig1:73033..737951622928187.5421915-CDS-Ecto-sp9_F_contig1:73033..73795Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1 73034..73795 +
1692277785.2408876-CDS-Ecto-sp9_F_contig1:73033..737951692277785.2408876-CDS-Ecto-sp9_F_contig1:73033..73795Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1 73034..73795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1.16.1prot_Ecto-sp9_F_contig1.16.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1 73034..73795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1.16.1

>prot_Ecto-sp9_F_contig1.16.1 ID=prot_Ecto-sp9_F_contig1.16.1|Name=mRNA_Ecto-sp9_F_contig1.16.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=254bp
GEHHHFRLYCPLKLLRGLFMELAARPIMHRGNLFRSVTEFRWAHFFETLG
IIYLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHL
ETGEPVLILSGNPSAESFHEGLLPNGFGLHVISHHFDDYMISFAPTEVYL
FLKDLPSSAGNRICSILLLGLVQSKYAGVHPSKSIQEITDQFLRSLDAKY
RYQAQRELNRAKEVSMPADNEVAIRQLINTAWQANIPHDFFQKLIHKVTK
HPE*
back to top

mRNA from alignment at Ecto-sp9_F_contig1:73034..73795+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1.16.1 ID=mRNA_Ecto-sp9_F_contig1.16.1|Name=mRNA_Ecto-sp9_F_contig1.16.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=762bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1:73034..73795+ (Ectocarpus species9 EcSCA_722f female)
GGGGAACACCATCATTTTCGTTTATACTGCCCTCTTAAGCTCTTAAGAGG ACTGTTTATGGAACTCGCAGCCAGACCCATCATGCATCGGGGCAATCTGT TCCGGTCTGTAACAGAATTCCGTTGGGCGCATTTCTTCGAAACCTTGGGG ATCATCTACCTCTACGAGTCCCGCACCTTTACGACCAGTGAGTGGAGTTA CCTGCCTGACTTCTATCTCCCAAATCTGCAGACGTGGATCGAGGTGAAGG GCCAATTCCCAACCGAAGAAGAGATCGCCAAAGGAAGGGCTGTGCATCTG GAGACAGGTGAGCCTGTATTGATTCTCTCCGGGAATCCGAGCGCCGAATC CTTCCATGAGGGGCTCCTGCCAAACGGCTTCGGCCTCCATGTCATCAGTC ATCACTTTGATGACTACATGATCAGTTTCGCCCCAACTGAGGTGTATCTA TTTTTAAAGGATCTGCCCTCCTCTGCCGGGAACCGCATCTGCAGCATACT GCTGCTTGGGCTTGTCCAATCAAAGTATGCGGGCGTGCATCCCTCTAAGT CTATTCAGGAAATAACGGATCAATTCCTTCGATCATTAGATGCCAAGTAC CGGTATCAGGCTCAGAGAGAGCTTAATCGAGCAAAAGAGGTCTCGATGCC CGCCGATAATGAGGTGGCGATTCGGCAACTGATTAACACCGCTTGGCAAG CAAACATCCCTCATGATTTCTTCCAGAAGCTGATCCATAAAGTCACGAAG CATCCTGAATAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1:73034..73795+

>mRNA_Ecto-sp9_F_contig1.16.1 ID=mRNA_Ecto-sp9_F_contig1.16.1|Name=mRNA_Ecto-sp9_F_contig1.16.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1524bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1:73034..73795+ (Ectocarpus species9 EcSCA_722f female)
GGGGAACACCATCATTTTCGTTTATACTGCCCTCTTAAGCTCTTAAGAGG
ACTGTTTATGGAACTCGCAGCCAGACCCATCATGCATCGGGGCAATCTGT
TCCGGTCTGTAACAGAATTCCGTTGGGCGCATTTCTTCGAAACCTTGGGG
ATCATCTACCTCTACGAGTCCCGCACCTTTACGACCAGTGAGTGGAGTTA
CCTGCCTGACTTCTATCTCCCAAATCTGCAGACGTGGATCGAGGTGAAGG
GCCAATTCCCAACCGAAGAAGAGATCGCCAAAGGAAGGGCTGTGCATCTG
GAGACAGGTGAGCCTGTATTGATTCTCTCCGGGAATCCGAGCGCCGAATC
CTTCCATGAGGGGCTCCTGCCAAACGGCTTCGGCCTCCATGTCATCAGTC
ATCACTTTGATGACTACATGATCAGTTTCGCCCCAACTGAGGTGTATCTA
TTTTTAAAGGATCTGCCCTCCTCTGCCGGGAACCGCATCTGCAGCATACT
GCTGCTTGGGCTTGTCCAATCAAAGTATGCGGGCGTGCATCCCTCTAAGT
CTATTCAGGAAATAACGGATCAATTCCTTCGATCATTAGATGCCAAGTAC
CGGTATCAGGCTCAGAGAGAGCTTAATCGAGCAAAAGAGGTCTCGATGCC
CGCCGATAATGAGGTGGCGATTCGGCAACTGATTAACACCGCTTGGCAAG
CAAACATCCCTCATGATTTCTTCCAGAAGCTGATCCATAAAGTCACGAAG
CATCCTGAATAAGGGGAACACCATCATTTTCGTTTATACTGCCCTCTTAA
GCTCTTAAGAGGACTGTTTATGGAACTCGCAGCCAGACCCATCATGCATC
GGGGCAATCTGTTCCGGTCTGTAACAGAATTCCGTTGGGCGCATTTCTTC
GAAACCTTGGGGATCATCTACCTCTACGAGTCCCGCACCTTTACGACCAG
TGAGTGGAGTTACCTGCCTGACTTCTATCTCCCAAATCTGCAGACGTGGA
TCGAGGTGAAGGGCCAATTCCCAACCGAAGAAGAGATCGCCAAAGGAAGG
GCTGTGCATCTGGAGACAGGTGAGCCTGTATTGATTCTCTCCGGGAATCC
GAGCGCCGAATCCTTCCATGAGGGGCTCCTGCCAAACGGCTTCGGCCTCC
ATGTCATCAGTCATCACTTTGATGACTACATGATCAGTTTCGCCCCAACT
GAGGTGTATCTATTTTTAAAGGATCTGCCCTCCTCTGCCGGGAACCGCAT
CTGCAGCATACTGCTGCTTGGGCTTGTCCAATCAAAGTATGCGGGCGTGC
ATCCCTCTAAGTCTATTCAGGAAATAACGGATCAATTCCTTCGATCATTA
GATGCCAAGTACCGGTATCAGGCTCAGAGAGAGCTTAATCGAGCAAAAGA
GGTCTCGATGCCCGCCGATAATGAGGTGGCGATTCGGCAACTGATTAACA
CCGCTTGGCAAGCAAACATCCCTCATGATTTCTTCCAGAAGCTGATCCAT
AAAGTCACGAAGCATCCTGAATAA
back to top