mRNA_Ecto-sp9_F_contig1.16.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1.16.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5IBW5_OSTTA) HSP 1 Score: 501 bits (1291), Expect = 2.410e-179 Identity = 244/253 (96.44%), Postives = 247/253 (97.63%), Query Frame = 1
Query: 1 GEHHHFRLYCPLKLLRGLFMELAARPIMHRGNLFRSVTEFRWAHFFETLGIIYLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHLETGEPVLILSGNPSAESFHEGLLPNGFGLHVISHHFDDYMISFAPTEVYLFLKDLPSSAGNRICSILLLGLVQSKYAGVHPSKSIQEITDQFLRSLDAKYRYQAQRELNRAKEVSMPADNEVAIRQLINTAWQANIPHDFFQKLIHKVTKHPE 759
GEHHHFRLYCPLKLLRGLFMELAARPIMHRGNLFRSVTEFRWAHFFE LGI YLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHLETGEPVLILSGNPSAESFHEGLLPNGFGLHVISHHFDDYMISFAPTEVYLFLKDLPSSAGNRICSILLLGLVQSKYA VHPSKSIQEI DQFLRSLDAKYRYQAQRELNRAKEV+MPADNEVAIRQLIN AWQAN+P DFFQKL+HKVTKHPE
Sbjct: 5 GEHHHFRLYCPLKLLRGLFMELAARPIMHRGNLFRSVTEFRWAHFFEALGITYLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHLETGEPVLILSGNPSAESFHEGLLPNGFGLHVISHHFDDYMISFAPTEVYLFLKDLPSSAGNRICSILLLGLVQSKYADVHPSKSIQEIADQFLRSLDAKYRYQAQRELNRAKEVAMPADNEVAIRQLINAAWQANVPPDFFQKLVHKVTKHPE 257
BLAST of mRNA_Ecto-sp9_F_contig1.16.1 vs.
Match: Uncharacterized (protein n=3 Tax=Pseudomonas TaxID=286 RepID=A0A2A3LVV2_PSEDL) HSP 1 Score: 86.3 bits (212), Expect = 8.450e-17 Identity = 47/95 (49.47%), Postives = 56/95 (58.95%), Query Frame = 1
Query: 85 HRGNLFRSVTEFRWAHFFETLGIIYLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHLETGEPVLILSGNPSAESFHEGLL 369
H+G RS TE WA E GI YLYE + YLPDF+LPN+ ++EVKG+ PTEEEI K AV TG V+ L G P ES EGL+
Sbjct: 10 HQGYRLRSYTELLWARVLEAAGIFYLYEPDLVRVDDGYYLPDFWLPNVGIYLEVKGKSPTEEEIQKADAVMARTGREVMFLVGRP--ESDREGLM 102
BLAST of mRNA_Ecto-sp9_F_contig1.16.1 vs.
Match: hypothetical (protein n=1 Tax=Alteromonas antoniana TaxID=2803813 RepID=UPI001C436E31) HSP 1 Score: 88.2 bits (217), Expect = 2.880e-16 Identity = 47/103 (45.63%), Postives = 66/103 (64.08%), Query Frame = 1
Query: 25 YCPLKLLRGLFMELAARPIMHRGNLFRSVTEFRWAHFFETLGIIYLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHLETGEPVLILSG 333
Y P++ RG + A +P +++G LFRS E ++A+FF+ +G+ + YE+ F+T YLPDFYLP L W+EVKG PT+ E K V ETG P L+LSG
Sbjct: 311 YQPVQNERGGY---APQPTVYQGLLFRSRLEAKYAYFFDKMGLEWRYETEFFSTRHGYYLPDFYLPALNAWVEVKGTLPTQTETDKLADVVKETGRPGLVLSG 410
BLAST of mRNA_Ecto-sp9_F_contig1.16.1 vs.
Match: Uncharacterized (protein n=9 Tax=Pseudomonas TaxID=286 RepID=V8R4K3_9PSED) HSP 1 Score: 83.6 bits (205), Expect = 8.540e-16 Identity = 47/101 (46.53%), Postives = 57/101 (56.44%), Query Frame = 1
Query: 85 HRGNLFRSVTEFRWAHFFETLGIIYLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHLETGEPVLILSGNPSAES---FHEGLLPNG 378
H G RS TE WA E GI YLYE E YLPDF+LPN+ ++EVKG+ PT EEI K AV TG+ V+ L G P ++ F+ GLL G
Sbjct: 10 HNGYRLRSYTELMWARLLEASGIFYLYEPDLVRVDEGYYLPDFWLPNVGIYLEVKGKEPTPEEIQKADAVMARTGKEVMFLIGLPESDRGGLFNCGLLMRG 110
BLAST of mRNA_Ecto-sp9_F_contig1.16.1 vs.
Match: Uncharacterized (protein (Fragment) n=4 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A2N5B5Y2_9PSED) HSP 1 Score: 82.0 bits (201), Expect = 3.070e-15 Identity = 46/98 (46.94%), Postives = 55/98 (56.12%), Query Frame = 1
Query: 85 HRGNLFRSVTEFRWAHFFETLGIIYLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHLETGEPVLILSGNPSAESFHEGLLPNG 378
H G RS TE WA E I YLYE E YLPDF+LPN+ ++EVKG+ PTEEEI K AV TG V+ L G P ++ EGL+ G
Sbjct: 8 HNGYRLRSYTELLWARVLEAAEIFYLYEPDLVRVDEGYYLPDFWLPNVGIYLEVKGKNPTEEEIQKADAVMERTGREVMFLVGRPQSDR--EGLMNCG 103
BLAST of mRNA_Ecto-sp9_F_contig1.16.1 vs.
Match: Uncharacterized (protein n=3 Tax=Pseudomonas TaxID=286 RepID=A0A3G7U2P9_9PSED) HSP 1 Score: 82.0 bits (201), Expect = 3.190e-15 Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 1
Query: 85 HRGNLFRSVTEFRWAHFFETLGIIYLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHLETGEPVLILSGNPSAE 348
H+G RS TE WA E I YLYE + YLPDF+LPN+ ++EVKG +PTEEE+ K AV TG V+ L G P ++
Sbjct: 10 HQGYRLRSYTELLWARVLEAADIFYLYEPDLVRVDDGFYLPDFWLPNVGIYVEVKGDWPTEEEVRKADAVMARTGREVVFLCGKPESD 97
BLAST of mRNA_Ecto-sp9_F_contig1.16.1 vs.
Match: Uncharacterized (protein n=8 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A7X3JQV8_9PSED) HSP 1 Score: 81.3 bits (199), Expect = 6.150e-15 Identity = 44/99 (44.44%), Postives = 53/99 (53.54%), Query Frame = 1
Query: 85 HRGNLFRSVTEFRWAHFFETLGIIYLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHLETGEPVLILSGNPSAESFHEGLLPNGF 381
H G RS TE W E GI YLYE + YLPDF+LPN+ ++EVKG+ PT EEI K AV TG V+ L G P A+ G+ GF
Sbjct: 10 HEGYRLRSYTELMWVKVMEASGIFYLYEPDLVRVDDGYYLPDFWLPNVGVYLEVKGKAPTSEEIQKAEAVMARTGREVIFLVGLPQADD--RGICNCGF 106
BLAST of mRNA_Ecto-sp9_F_contig1.16.1 vs.
Match: hypothetical (protein n=1 Tax=Pseudomonas fluorescens TaxID=294 RepID=UPI0005FC1210) HSP 1 Score: 80.5 bits (197), Expect = 1.190e-14 Identity = 40/89 (44.94%), Postives = 50/89 (56.18%), Query Frame = 1
Query: 85 HRGNLFRSVTEFRWAHFFETLGIIYLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHLETGEPVLILSGNPSAES 351
H G RS TE WA E I YLYE + YLPDF+LPN+ ++EVKG PTEEE+ K AV TG V+ L G P +++
Sbjct: 10 HNGYRLRSYTELLWARVLEAADIFYLYEPDLIRVDDGFYLPDFWLPNVGIYVEVKGGLPTEEEVQKADAVMERTGREVVFLCGKPESDT 98
BLAST of mRNA_Ecto-sp9_F_contig1.16.1 vs.
Match: hypothetical (protein n=2 Tax=Pseudomonas TaxID=286 RepID=UPI000BA2B4CF) HSP 1 Score: 80.5 bits (197), Expect = 1.190e-14 Identity = 41/88 (46.59%), Postives = 50/88 (56.82%), Query Frame = 1
Query: 85 HRGNLFRSVTEFRWAHFFETLGIIYLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHLETGEPVLILSGNPSAE 348
H G RS TE WA E G+ YLYE E YLPDF+LPN+ ++EVKG+ PT EEI K AV TG+ V L G P ++
Sbjct: 10 HNGYRLRSYTELMWARLLEASGLFYLYEPDLVRVDEGFYLPDFWLPNVGVYLEVKGKEPTPEEIQKADAVMARTGKEVFFLVGLPESD 97
BLAST of mRNA_Ecto-sp9_F_contig1.16.1 vs.
Match: Uncharacterized (protein n=2 Tax=unclassified Pseudomonas TaxID=196821 RepID=A0A2V2T352_9PSED) HSP 1 Score: 80.1 bits (196), Expect = 1.900e-14 Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = 1
Query: 85 HRGNLFRSVTEFRWAHFFETLGIIYLYESRTFTTSEWSYLPDFYLPNLQTWIEVKGQFPTEEEIAKGRAVHLETGEPVLILSGNPSAES 351
H+G RS TE WA + L I YLYE YLPDFYLP+ ++EVKG PT+ E AK VH TG PV+ L P +++
Sbjct: 10 HQGYKLRSYTELMWARLMDALDIFYLYEPHLLQVEGCKYLPDFYLPSADMYLEVKGTRPTDIEKAKAEQVHTTTGRPVVFLVSRPQSDT 98 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1.16.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1.16.1 >prot_Ecto-sp9_F_contig1.16.1 ID=prot_Ecto-sp9_F_contig1.16.1|Name=mRNA_Ecto-sp9_F_contig1.16.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=254bp GEHHHFRLYCPLKLLRGLFMELAARPIMHRGNLFRSVTEFRWAHFFETLGback to top mRNA from alignment at Ecto-sp9_F_contig1:73034..73795+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1.16.1 ID=mRNA_Ecto-sp9_F_contig1.16.1|Name=mRNA_Ecto-sp9_F_contig1.16.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=762bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1:73034..73795+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1:73034..73795+ >mRNA_Ecto-sp9_F_contig1.16.1 ID=mRNA_Ecto-sp9_F_contig1.16.1|Name=mRNA_Ecto-sp9_F_contig1.16.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1524bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1:73034..73795+ (Ectocarpus species9 EcSCA_722f female)back to top |