mRNA_Ecto-sp9_F_contig1.15.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1.15.1
Unique NamemRNA_Ecto-sp9_F_contig1.15.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1.15.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5I999_OSTTA)

HSP 1 Score: 168 bits (426), Expect = 1.010e-48
Identity = 85/98 (86.73%), Postives = 88/98 (89.80%), Query Frame = 2 
Query:  392 PKRLDGDAGTDLIVYRIVHYQKHIIGGWIQYVAYRGSKALAGAFAKKIVKDNQVELERDECADLAPDNVLSPQIDRVQLSTKAELLNELSYSASMGIG 685
            P    G   TDLIVYRIVHYQKH IGGWIQYVAYRGSKALA +FAK+IVKDNQVELERDECADLAPDNVLSPQIDRVQLS KAELLNELSY+ASMGIG
Sbjct:  131 PSIAAGATDTDLIVYRIVHYQKHSIGGWIQYVAYRGSKALAESFAKEIVKDNQVELERDECADLAPDNVLSPQIDRVQLSAKAELLNELSYAASMGIG 228
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1.15.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.010e-4886.73protein n=1 Tax=Ostreococcus tauri TaxID=70448 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1contigEcto-sp9_F_contig1:72133..72981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size688
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1.15.1prot_Ecto-sp9_F_contig1.15.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1 72374..72981 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928187.25984-UTR-Ecto-sp9_F_contig1:72132..723731622928187.25984-UTR-Ecto-sp9_F_contig1:72132..72373Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1 72133..72373 +
1692277785.1536713-UTR-Ecto-sp9_F_contig1:72132..723731692277785.1536713-UTR-Ecto-sp9_F_contig1:72132..72373Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1 72133..72373 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928187.2721605-CDS-Ecto-sp9_F_contig1:72373..725491622928187.2721605-CDS-Ecto-sp9_F_contig1:72373..72549Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1 72374..72549 +
1692277785.1894305-CDS-Ecto-sp9_F_contig1:72373..725491692277785.1894305-CDS-Ecto-sp9_F_contig1:72373..72549Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1 72374..72549 +
1622928187.2857482-CDS-Ecto-sp9_F_contig1:72710..729811622928187.2857482-CDS-Ecto-sp9_F_contig1:72710..72981Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1 72711..72981 +
1692277785.2259552-CDS-Ecto-sp9_F_contig1:72710..729811692277785.2259552-CDS-Ecto-sp9_F_contig1:72710..72981Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1 72711..72981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1.15.1

>prot_Ecto-sp9_F_contig1.15.1 ID=prot_Ecto-sp9_F_contig1.15.1|Name=mRNA_Ecto-sp9_F_contig1.15.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=149bp
MPWQMLMASILTIRRRCIASGVRSKSFGLTDPSLRNMTGALIMKEHDPRK
PKRLDGDAGTDLIVYRIVHYQKHIIGGWIQYVAYRGSKALAGAFAKKIVK
DNQVELERDECADLAPDNVLSPQIDRVQLSTKAELLNELSYSASMGIG*
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mRNA from alignment at Ecto-sp9_F_contig1:72133..72981+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1.15.1 ID=mRNA_Ecto-sp9_F_contig1.15.1|Name=mRNA_Ecto-sp9_F_contig1.15.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=849bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1:72133..72981+ (Ectocarpus species9 EcSCA_722f female)
ATGGATTTCATCGCGATTGCCAAAAAGAAAGGCTGGGATAAGGGAGAGCA
AGTAGAGAAACTTCTGGATCTGGTTCAGGCTAAACTCGATGAGCAGGTTG
CTGTCGAGTACCTTGAAGCGGCTTCAGGTTACGATGATGGTCTCGAATCC
TTTGAGGTTCTGGCCCAGTGGCCCGAAGGTGATACGTGGTGTGAGGATGT
CCGGGCCCGGGATATCGCGGATGCTCAAAACGTAGCCCTCAATGCCATGG
CAGATGCTTATGGCGTCGATTTTGACGATAAGGAGGCGCTGCATAGCTTC
CGGAGTTCGGTCAAAATCCTTCGGATTGACTGATCCTTCATTACGCAATA
TGACAGGTGCATTGATCATGAAAGAACACGATCCTCGGAAACCCAAGAGG
CTTGACGGTGATGCTGGGTTAAACTGGGCTCGCTGCCGGGATTGCGGTCG
TGAAGGGCCGCGCCTTCCTGATATCAGGCATTCAAAGCATTGCGGCTGGC
GCAACTGAGCACCTGATAGGACGAAAAAAACGCGATTCGATAACTGATAC
TCTCATGGTGCCAAACTTCGGATAGGAGCACCGATTTGATTGTCTACCGG
ATTGTCCATTATCAAAAGCACATCATTGGCGGCTGGATTCAATACGTGGC
TTATCGCGGATCGAAAGCGTTGGCCGGGGCTTTCGCCAAAAAAATCGTCA
AAGACAATCAGGTTGAACTGGAACGGGATGAGTGCGCCGATCTGGCGCCT
GATAATGTGCTGAGTCCGCAGATAGACAGGGTTCAGCTTTCTACCAAGGC
CGAGTTGTTGAACGAGTTGTCCTATTCGGCATCAATGGGGATTGGATAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1:72133..72981+

>mRNA_Ecto-sp9_F_contig1.15.1 ID=mRNA_Ecto-sp9_F_contig1.15.1|Name=mRNA_Ecto-sp9_F_contig1.15.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=894bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1:72133..72981+ (Ectocarpus species9 EcSCA_722f female)
ATGCCATGGCAGATGCTTATGGCGTCGATTTTGACGATAAGGAGGCGCTG
CATAGCTTCCGGAGTTCGGTCAAAATCCTTCGGATTGACTGATCCTTCAT
TACGCAATATGACAGGTGCATTGATCATGAAAGAACACGATCCTCGGAAA
CCCAAGAGGCTTGACGGTGATGCTGGATGCCATGGCAGATGCTTATGGCG
TCGATTTTGACGATAAGGAGGCGCTGCATAGCTTCCGGAGTTCGGTCAAA
ATCCTTCGGATTGACTGATCCTTCATTACGCAATATGACAGGTGCATTGA
TCATGAAAGAACACGATCCTCGGAAACCCAAGAGGCTTGACGGTGATGCT
GGCACCGATTTGATTGTCTACCGGATTGTCCATTATCAAAAGCACATCAT
TGGCGGCTGGATTCAATACGTGGCTTATCGCGGATCGAAAGCGTTGGCCG
GGGCTTTCGCCAAAAAAATCGTCAAAGACAATCAGGTTGAACTGGAACGG
GATGAGTGCGCCGATCTGGCGCCTGATAATGTGCTGAGTCCGCAGATAGA
CAGGGTTCAGCTTTCTACCAAGGCCGAGTTGTTGAACGAGTTGTCCTATT
CGGCATCAATGGGGATTGGATAGCACCGATTTGATTGTCTACCGGATTGT
CCATTATCAAAAGCACATCATTGGCGGCTGGATTCAATACGTGGCTTATC
GCGGATCGAAAGCGTTGGCCGGGGCTTTCGCCAAAAAAATCGTCAAAGAC
AATCAGGTTGAACTGGAACGGGATGAGTGCGCCGATCTGGCGCCTGATAA
TGTGCTGAGTCCGCAGATAGACAGGGTTCAGCTTTCTACCAAGGCCGAGT
TGTTGAACGAGTTGTCCTATTCGGCATCAATGGGGATTGGATAG
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