mRNA_Ecto-sp9_F_contig1.13.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1.13.1
Unique NamemRNA_Ecto-sp9_F_contig1.13.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1.13.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5ICG5_OSTTA)

HSP 1 Score: 619 bits (1597), Expect = 1.030e-221
Identity = 311/347 (89.63%), Postives = 320/347 (92.22%), Query Frame = 1 
Query:   28 FSFSGIDTNYWGKFHILLKMVLQDAAVIGVKEVHTGSESKVTYRVTERPASLTSSGSLVTRDSTLEPFVFGTDPNAGDHIRIVPDSSAQLLSGVDNDAIIVMAWLLILLDDYPERVQITSTAPLYLWKRAQRLAMESGYTNVRVLGTGKADIMGAQSNGDSSMSDAFGTHTLFAMPEMDANLWSGAHRALKDCVISSTTTGVRQLWTLNDGEHVRVDPFEGRFNLTESGLPARDTLKSESLWLASDPGFENNVEINPKTTAMQILSGTGEEILIAMAWLLVMHEMHPGLMAVKTKAAGWQWAKALRIAQGAGYSSDELPWPIDSDGEESKVRHFPQIKVPESLDFRA 1068
            +   GIDTNYWGKFHILLKMVLQDAAVIGV+EVHTG ES V+Y V ERPAS+TSSGSLVTRDSTLEPFVFGTD N GD IRI+PDSS QLLSGVDNDAIIVMAWLLILLDDYPERVQITSTAPLYLWKRAQRLAMESGYTN  VL   KA IMGAQSNGDSSMSDAFGTHTLFAMPEMDANLWSGAHRALKDCVISSTTTGVRQLWTLNDGEHVRVDPFEGRFNLTESGLPARDT K+ESLWLASDPGFENNVEINP TTAMQILSGTGEEILIAMAWLLVMHEMHPGLMAVKTKAAGWQWAKALRIAQGAGYSSDELPWPID+DG  + V   P I+VPE LDFRA
Sbjct:   66 YKLEGIDTNYWGKFHILLKMVLQDAAVIGVEEVHTGGESNVSYGVGERPASVTSSGSLVTRDSTLEPFVFGTDQNDGDRIRILPDSSEQLLSGVDNDAIIVMAWLLILLDDYPERVQITSTAPLYLWKRAQRLAMESGYTN-GVLEPDKAAIMGAQSNGDSSMSDAFGTHTLFAMPEMDANLWSGAHRALKDCVISSTTTGVRQLWTLNDGEHVRVDPFEGRFNLTESGLPARDTQKAESLWLASDPGFENNVEINPNTTAMQILSGTGEEILIAMAWLLVMHEMHPGLMAVKTKAAGWQWAKALRIAQGAGYSSDELPWPIDNDGAAAPVTPLPVIEVPEDLDFRA 411
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1.13.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.030e-22189.63protein n=1 Tax=Ostreococcus tauri TaxID=70448 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1contigEcto-sp9_F_contig1:68934..71366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1071
Cds size1071
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928187.157886-CDS-Ecto-sp9_F_contig1:68933..693871622928187.157886-CDS-Ecto-sp9_F_contig1:68933..69387Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1 68934..69387 +
1692277785.0645888-CDS-Ecto-sp9_F_contig1:68933..693871692277785.0645888-CDS-Ecto-sp9_F_contig1:68933..69387Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1 68934..69387 +
1622928187.1734312-CDS-Ecto-sp9_F_contig1:70749..713661622928187.1734312-CDS-Ecto-sp9_F_contig1:70749..71366Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1 70750..71366 +
1692277785.0948296-CDS-Ecto-sp9_F_contig1:70749..713661692277785.0948296-CDS-Ecto-sp9_F_contig1:70749..71366Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1 70750..71366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1.13.1prot_Ecto-sp9_F_contig1.13.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1 68934..71366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1.13.1

>prot_Ecto-sp9_F_contig1.13.1 ID=prot_Ecto-sp9_F_contig1.13.1|Name=mRNA_Ecto-sp9_F_contig1.13.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=357bp
MKSAVNHTTFSFSGIDTNYWGKFHILLKMVLQDAAVIGVKEVHTGSESKV
TYRVTERPASLTSSGSLVTRDSTLEPFVFGTDPNAGDHIRIVPDSSAQLL
SGVDNDAIIVMAWLLILLDDYPERVQITSTAPLYLWKRAQRLAMESGYTN
VRVLGTGKADIMGAQSNGDSSMSDAFGTHTLFAMPEMDANLWSGAHRALK
DCVISSTTTGVRQLWTLNDGEHVRVDPFEGRFNLTESGLPARDTLKSESL
WLASDPGFENNVEINPKTTAMQILSGTGEEILIAMAWLLVMHEMHPGLMA
VKTKAAGWQWAKALRIAQGAGYSSDELPWPIDSDGEESKVRHFPQIKVPE
SLDFRA*
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mRNA from alignment at Ecto-sp9_F_contig1:68934..71366+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1.13.1 ID=mRNA_Ecto-sp9_F_contig1.13.1|Name=mRNA_Ecto-sp9_F_contig1.13.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2433bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1:68934..71366+ (Ectocarpus species9 EcSCA_722f female)
ATGAAGTCAGCCGTTAATCACACCACTTTTTCCTTTTCAGGCATCGACAC
TAACTATTGGGGCAAGTTTCATATTCTGCTCAAGATGGTTCTTCAGGATG
CCGCTGTGATCGGTGTTAAAGAGGTCCACACGGGCAGCGAATCCAAGGTG
ACATATCGAGTGACTGAGAGACCTGCAAGCCTGACATCTTCAGGCTCGCT
CGTTACTCGCGACAGCACGCTTGAACCTTTCGTGTTCGGCACTGATCCAA
ACGCTGGCGATCATATCCGGATCGTACCAGACAGCTCTGCACAGCTGCTC
TCAGGCGTTGATAATGACGCGATTATTGTCATGGCGTGGCTTCTTATCCT
CTTGGATGACTACCCTGAGCGGGTTCAGATCACGTCTACGGCGCCACTGT
ATCTTTGGAAGCGGGCGCAGAGACTCGCCATGGAGTCCGGCTACACGAAT
GTCAGTTTGCCCGTTGATGCCTTCCCTCCCCGTGATGTGGCGTTGATTAA
TCCGCCAGACTCACTCGATTTTCGCGCCTGAGCGCTATTGGAAATTCGCG
AACCTGTAATCATGCCCTCTCTCAGTATCAGGTAGGTGGCCAGCTATGCA
GCTCTCTTTGTTCGATGCGGTTAAAGACGTTTATGCCCGGGCCGATGGGC
CCGTATCCAATGAGGATCTCTATCGCCGGGTCTCGATGGCAACTGGGATC
ACGATGGAGGAAATGGATCGGACGGCGCCTATCGGACAGTCTGGCAAACG
TACCAGCCCGATTAAGCGAGCAGCCCGTTGGGCACAACAGTCCCTTAAGG
CTGCGGGCCTGCTGGAGAAGACGCCAGAGCGAGGCCGGTGGACACTGACC
AAAGAGGGTAAAACTGAATTGCGTAAAGCTCGCCCCAACGCAACGCTTGT
CGCGTTCTCCACGGATCTCGGGGTCGGGATCTGGTCGTTGGCACAGGATG
TGTTCAGCAAGATTGATGAGCCAATCACGCTCGCGCTGACCTCACCTCCC
TATCCTTTGCGTACTCCGCGAGCATACGGGAATGCCGGGAAGACCGAGAA
GGAATACATCGAATTCGTCGTTGAGAATCTCCGGCCGATAGCGAAGAACC
TCGTGCCCGGGGGCGCGATAACCCTCAACGTTGCTAACGACATTTTCGAA
AGCGGAGTGCCCTCACGATCCTTGTATTGCGAGCGTCTGGTGCTCGCCAT
CTGTGATGAGCTGAATTTGTCGCTCATGGACCGCCTTGTATGGGTCAACC
CATCGAAAGCCCCCGGGCCGACGCAGTGGGCGTGCAAAACCCGCCAGCAG
CTCAAGGGCGCGTACGAACCAATCTTTTACTTCACAAACGATCCAAAGCT
GGCACGGTCAAACAACCGCCGTGTACTCCAGCCTCACACTGAGCGAATGC
AGAAGCTGATTGCTTCGGGCGGGGAAAAGCGGGGGCGCGTCTCCTCGGAC
AATAGCCATACGGTCAAGCCCGGTAGTTATAGCAATGCCACTGAGGGTCG
AATCCCAACTAACGTTTTGACCTACTCTCACACCTGTAAGAGTCAGCTCG
ACTACAAAAAAGCCGCACGGGCAGAATTTTTACCCGCTCACGGGGCCCCT
TACCCGCTGCAGCTCGCTAAATTTCTGATCCAGTTCCTGTCAAATCGAGG
GGATCTTGTCGTAGATCCCTTCGGGGGCAGTATGACAACGGGCGTGGCCG
CTGAAGAGCTGGATCGTCGTTGGATCTGCACTGAGGCGATGTGGGAGTAC
GCAAAGGGCTCGGCCAACCGGTTCCCCGGCGCGGTCATGAACGAAGCCTT
TGAAAATGCCGCGTAGGGGTTTTGGGAACTGGTAAGGCTGACATAATGGG
TGCTCAATCAAACGGAGACAGCAGCATGTCAGACGCATTCGGTACTCACA
CGTTGTTCGCTATGCCAGAGATGGATGCAAATCTCTGGTCCGGCGCTCAC
CGGGCGCTGAAAGACTGTGTGATCAGCTCGACTACGACTGGTGTCAGACA
GCTCTGGACGTTAAACGATGGCGAGCACGTTCGCGTTGATCCGTTTGAGG
GTCGTTTCAACCTTACCGAATCCGGGTTGCCTGCCCGGGACACTCTGAAG
TCGGAAAGCCTTTGGCTGGCCTCTGACCCCGGCTTCGAGAACAACGTCGA
AATCAATCCCAAGACCACTGCAATGCAAATTCTCTCCGGCACCGGAGAAG
AGATCCTCATTGCGATGGCGTGGTTGCTCGTGATGCACGAGATGCACCCC
GGGCTGATGGCCGTAAAAACCAAAGCTGCCGGGTGGCAGTGGGCAAAGGC
GCTTCGAATCGCGCAAGGCGCCGGGTACAGCTCCGATGAGCTGCCATGGC
CTATCGACTCTGACGGTGAAGAGTCAAAAGTGCGGCACTTCCCTCAAATC
AAAGTACCTGAGAGCCTCGATTTCAGGGCGTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1:68934..71366+

>mRNA_Ecto-sp9_F_contig1.13.1 ID=mRNA_Ecto-sp9_F_contig1.13.1|Name=mRNA_Ecto-sp9_F_contig1.13.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2142bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1:68934..71366+ (Ectocarpus species9 EcSCA_722f female)
ATGAAGTCAGCCGTTAATCACACCACTTTTTCCTTTTCAGGCATCGACAC
TAACTATTGGGGCAAGTTTCATATTCTGCTCAAGATGGTTCTTCAGGATG
CCGCTGTGATCGGTGTTAAAGAGGTCCACACGGGCAGCGAATCCAAGGTG
ACATATCGAGTGACTGAGAGACCTGCAAGCCTGACATCTTCAGGCTCGCT
CGTTACTCGCGACAGCACGCTTGAACCTTTCGTGTTCGGCACTGATCCAA
ACGCTGGCGATCATATCCGGATCGTACCAGACAGCTCTGCACAGCTGCTC
TCAGGCGTTGATAATGACGCGATTATTGTCATGGCGTGGCTTCTTATCCT
CTTGGATGACTACCCTGAGCGGGTTCAGATCACGTCTACGGCGCCACTGT
ATCTTTGGAAGCGGGCGCAGAGACTCGCCATGGAGTCCGGCTACACGAAT
GTCAATGAAGTCAGCCGTTAATCACACCACTTTTTCCTTTTCAGGCATCG
ACACTAACTATTGGGGCAAGTTTCATATTCTGCTCAAGATGGTTCTTCAG
GATGCCGCTGTGATCGGTGTTAAAGAGGTCCACACGGGCAGCGAATCCAA
GGTGACATATCGAGTGACTGAGAGACCTGCAAGCCTGACATCTTCAGGCT
CGCTCGTTACTCGCGACAGCACGCTTGAACCTTTCGTGTTCGGCACTGAT
CCAAACGCTGGCGATCATATCCGGATCGTACCAGACAGCTCTGCACAGCT
GCTCTCAGGCGTTGATAATGACGCGATTATTGTCATGGCGTGGCTTCTTA
TCCTCTTGGATGACTACCCTGAGCGGGTTCAGATCACGTCTACGGCGCCA
CTGTATCTTTGGAAGCGGGCGCAGAGACTCGCCATGGAGTCCGGCTACAC
GAATGTCAGGGTTTTGGGAACTGGTAAGGCTGACATAATGGGTGCTCAAT
CAAACGGAGACAGCAGCATGTCAGACGCATTCGGTACTCACACGTTGTTC
GCTATGCCAGAGATGGATGCAAATCTCTGGTCCGGCGCTCACCGGGCGCT
GAAAGACTGTGTGATCAGCTCGACTACGACTGGTGTCAGACAGCTCTGGA
CGTTAAACGATGGCGAGCACGTTCGCGTTGATCCGTTTGAGGGTCGTTTC
AACCTTACCGAATCCGGGTTGCCTGCCCGGGACACTCTGAAGTCGGAAAG
CCTTTGGCTGGCCTCTGACCCCGGCTTCGAGAACAACGTCGAAATCAATC
CCAAGACCACTGCAATGCAAATTCTCTCCGGCACCGGAGAAGAGATCCTC
ATTGCGATGGCGTGGTTGCTCGTGATGCACGAGATGCACCCCGGGCTGAT
GGCCGTAAAAACCAAAGCTGCCGGGTGGCAGTGGGCAAAGGCGCTTCGAA
TCGCGCAAGGCGCCGGGTACAGCTCCGATGAGCTGCCATGGCCTATCGAC
TCTGACGGTGAAGAGTCAAAAGTGCGGCACTTCCCTCAAATCAAAGTACC
TGAGAGCCTCGATTTCAGGGCGTAAGGGTTTTGGGAACTGGTAAGGCTGA
CATAATGGGTGCTCAATCAAACGGAGACAGCAGCATGTCAGACGCATTCG
GTACTCACACGTTGTTCGCTATGCCAGAGATGGATGCAAATCTCTGGTCC
GGCGCTCACCGGGCGCTGAAAGACTGTGTGATCAGCTCGACTACGACTGG
TGTCAGACAGCTCTGGACGTTAAACGATGGCGAGCACGTTCGCGTTGATC
CGTTTGAGGGTCGTTTCAACCTTACCGAATCCGGGTTGCCTGCCCGGGAC
ACTCTGAAGTCGGAAAGCCTTTGGCTGGCCTCTGACCCCGGCTTCGAGAA
CAACGTCGAAATCAATCCCAAGACCACTGCAATGCAAATTCTCTCCGGCA
CCGGAGAAGAGATCCTCATTGCGATGGCGTGGTTGCTCGTGATGCACGAG
ATGCACCCCGGGCTGATGGCCGTAAAAACCAAAGCTGCCGGGTGGCAGTG
GGCAAAGGCGCTTCGAATCGCGCAAGGCGCCGGGTACAGCTCCGATGAGC
TGCCATGGCCTATCGACTCTGACGGTGAAGAGTCAAAAGTGCGGCACTTC
CCTCAAATCAAAGTACCTGAGAGCCTCGATTTCAGGGCGTAA
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