mRNA_Ecto-sp8_S_contig10264.440.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10264.440.1
Unique NamemRNA_Ecto-sp8_S_contig10264.440.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10264.440.1 vs. uniprot
Match: D8LEW1_ECTSI (D27-like_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW1_ECTSI)

HSP 1 Score: 474 bits (1221), Expect = 2.420e-164
Identity = 237/264 (89.77%), Postives = 238/264 (90.15%), Query Frame = 2
Query:  209 QVIRGRAGPTDATPTYDDTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEVRRSRNYSSNQQRAQLPCLWIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRAVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGALRQPNQPAVARCHQIDIDEDGSS 1000
            +VIRGRAGPTDATPTYDDTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIE                    IDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCK     VPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGALRQPNQPAVARCHQIDIDED SS
Sbjct:   80 KVIRGRAGPTDATPTYDDTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIE--------------------IDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCK-----VPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGALRQPNQPAVARCHQIDIDEDDSS 318          
BLAST of mRNA_Ecto-sp8_S_contig10264.440.1 vs. uniprot
Match: A0A6H5K8Y9_9PHAE (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y9_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 4.750e-95
Identity = 187/347 (53.89%), Postives = 192/347 (55.33%), Query Frame = 2
Query:  209 QVIRGRAGPTDATPTYDDTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEVRRSRNYSSNQQRAQLPCLWIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRAVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGALRQPNQPAVARCHQIDIDEDGSS*TPFTFLVSCMFFFI*KYRSLKMFFWYA*AKRFRMTRDRAAALEGEGRAYST*LVPWWGRG--VVAEMQTRLRNLGSAMADPC 1243
            +VIRGRAGPT ATPTYDDTRPLDRILLGLFRSKLAEEVG DGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFP+WLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLND+EV                                                           PTEEFFAKDMGLALEMTPNYEDFSCQ                                                                                 AKRFR+TRDRAAALEGEGRAY    V        VVAE QTRLR+LGSAMADPC
Sbjct:   80 KVIRGRAGPTAATPTYDDTRPLDRILLGLFRSKLAEEVGEDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPAWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDVEV-----------------------------------------------------------PTEEFFAKDMGLALEMTPNYEDFSCQ---------------------------------------------------------------------------------AKRFRITRDRAAALEGEGRAYIVGAVVGQRSNAVVVAEKQTRLRSLGSAMADPC 286          
BLAST of mRNA_Ecto-sp8_S_contig10264.440.1 vs. uniprot
Match: A0A835ZDY9_9STRA (D27-like_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDY9_9STRA)

HSP 1 Score: 273 bits (697), Expect = 1.170e-86
Identity = 135/238 (56.72%), Postives = 171/238 (71.85%), Query Frame = 2
Query:  281 ILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEK--FPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEVRRSRNYSSNQQRAQLPCLWIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRAVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGALRQPNQPAVARCHQIDIDE 988
            +LLGLFR KLA E+  DG   +PGY GL++MI+ LN+   +P+   TQ+A+R+VL+SLFP WLP +FAVMFSKPFP FS R+NAWVTLVASQWLMGPSK+ND+E                    ID G +GVGHGLLV+RCR+LE AGCASVC+NTCK     +PT+EFF KDMGL L+MTP+Y+DFSCQFSF K PL  + DE F VACFEQCP++ + ++        CH++ ++E
Sbjct:    1 MLLGLFRKKLAAELQYDGS--DPGYAGLIEMIRSLNDGPGYPTAHDTQQAARKVLQSLFPPWLPGAFAVMFSKPFPQFSCRMNAWVTLVASQWLMGPSKINDVE--------------------IDGGQMGVGHGLLVKRCRYLEEAGCASVCVNTCK-----IPTQEFFMKDMGLPLQMTPDYDDFSCQFSFGKIPLEPEQDEVFAVACFEQCPNKASTKR-------LCHKVGLEE 204          
BLAST of mRNA_Ecto-sp8_S_contig10264.440.1 vs. uniprot
Match: A0A8J4BT63_9CHLO (D27-like_C domain-containing protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BT63_9CHLO)

HSP 1 Score: 259 bits (661), Expect = 2.010e-80
Identity = 125/235 (53.19%), Postives = 161/235 (68.51%), Query Frame = 2
Query:  227 AGPTDATPTYDD--TRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEVRRSRNYSSNQQRAQLPCLWIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRAVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSR 925
            AGPTD  P+Y D  ++P++ +++ LFR K+   +G D + +  GYD ++D+ + LN KF +  +TQEA+R +L +LFPSWLP +F VMFSKPFP FS RLNA  T +  QWLMGP K+ND+E                    ID G VG GHG+LVERCR+LE AGCASVC+N+CK     +PT+ FF+KDMGL L MTPNYEDFSCQF+F KTP+  +MDEAF   CF QCPS+
Sbjct:   42 AGPTDPAPSYRDIDSQPVNVVVMALFRRKMVAALGSDSELY--GYDAIIDLTRRLNSKFRTGAETQEATRAILNALFPSWLPGAFKVMFSKPFPEFSCRLNALATALTCQWLMGPCKVNDVE--------------------IDGGIVGKGHGVLVERCRYLEQAGCASVCINSCK-----IPTQTFFSKDMGLQLTMTPNYEDFSCQFAFGKTPMLAEMDEAFTTPCFRQCPSK 249          
BLAST of mRNA_Ecto-sp8_S_contig10264.440.1 vs. uniprot
Match: A8IC34_CHLRE (Predicted protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IC34_CHLRE)

HSP 1 Score: 254 bits (649), Expect = 1.930e-78
Identity = 130/255 (50.98%), Postives = 161/255 (63.14%), Query Frame = 2
Query:  224 RAGPTDATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEVRRSRNYSSNQQRAQLPCLWIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRAVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSR-------GALRQPNQPAVA 961
            +AGP DA P Y   D++PL+ I++ LFR K+ E +G D      GYD ++D+ + LN KF +  +TQEA+R +L +LFPSWLP +F VMFS+P P FS RLNA  T +  QWLMGP K+ND+E                    ID G VG GHG+LVERCR+LE AGCASVC+N+CK     VPT+ FF KDMGL L MTPNY+DFSCQFSF KTP   D D AF   CF QCPS+       G +  P+ P  A
Sbjct:   50 QAGPVDAAPDYKPIDSQPLNIIVMALFRRKMVEALGSDSKL--SGYDAIIDLTRKLNTKFRTAAETQEATRGILNALFPSWLPGAFKVMFSRPLPEFSCRLNALATAMTCQWLMGPCKVNDVE--------------------IDGGKVGTGHGVLVERCRYLEQAGCASVCINSCK-----VPTQSFFEKDMGLPLTMTPNYDDFSCQFSFGKTPDPVDRDPAFATPCFTQCPSKRSRTPVCGGIELPSMPGAA 277          
BLAST of mRNA_Ecto-sp8_S_contig10264.440.1 vs. uniprot
Match: A0A7J7QQS2_9CHLO (D27-like_C domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QQS2_9CHLO)

HSP 1 Score: 252 bits (643), Expect = 3.900e-78
Identity = 121/238 (50.84%), Postives = 159/238 (66.81%), Query Frame = 2
Query:  224 RAGPTDATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEVRRSRNYSSNQQRAQLPCLWIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRAVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGA 931
            +AGP +  P Y   D++PL+++++ LFR K+   +G D      GY+ ++D+ + LN  +   R+ Q  +R++LKSLFPSWLP +FAVMFSKP P FS +LNA  T +  QWLMGP K+ND+E                    +DDG+VG G G+LVERCR+LE AGCAS+C+N+CK     VPT+EFF KDMGL L MTPNYEDFSCQF+F K PL + +DEAF   CF+QCPSR A
Sbjct:    1 QAGPVEPVPDYTAIDSQPLNQVVMALFRRKMVAAIGSDSQL--SGYEAIIDLTRRLNASYSEARQVQLTTRKILKSLFPSWLPGAFAVMFSKPLPEFSCKLNALATALTCQWLMGPCKVNDVE--------------------LDDGSVGQGMGVLVERCRYLEQAGCASICINSCK-----VPTQEFFEKDMGLPLTMTPNYEDFSCQFTFGKAPLPQQLDEAFSTPCFQQCPSRAA 211          
BLAST of mRNA_Ecto-sp8_S_contig10264.440.1 vs. uniprot
Match: I0YX40_COCSC (D27-like_C domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YX40_COCSC)

HSP 1 Score: 249 bits (636), Expect = 3.840e-77
Identity = 122/247 (49.39%), Postives = 159/247 (64.37%), Query Frame = 2
Query:  224 RAGPTDATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEVRRSRNYSSNQQRAQLPCLWIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRAVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGALRQPNQPAV 958
            +AGP    P+Y+  D++PL+R ++ LFR K+   +G + D  + GYD ++D+ ++LN K  + R TQ  +R++L SLFPSWLP +F VMFSKP P  S +LNAWVT++  QWLMGP K+ND+E                    +D G +G G G+LVERCR+LE  GCASVC+N+CK     +PT+EFFAKDMGL L MTPNYEDFSCQFSF  TP    +DEAF   CF QCPS+   R    P  
Sbjct:    7 KAGPETPAPSYESIDSQPLNRAIMSLFRQKMVAAIGKNSD--KEGYDAIVDLTRLLNSKSSNPRDTQVKTRQILLSLFPSWLPPAFKVMFSKPMPEVSCQLNAWVTMLTCQWLMGPCKVNDVE--------------------LDGGRIGSGQGVLVERCRYLEETGCASVCLNSCK-----IPTQEFFAKDMGLPLTMTPNYEDFSCQFSFGLTPKPAAIDEAFATPCFSQCPSKQRHRGDRCPGA 226          
BLAST of mRNA_Ecto-sp8_S_contig10264.440.1 vs. uniprot
Match: A0A0D2MYG1_9CHLO (D27-like_C domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MYG1_9CHLO)

HSP 1 Score: 250 bits (639), Expect = 9.180e-77
Identity = 129/255 (50.59%), Postives = 162/255 (63.53%), Query Frame = 2
Query:  224 RAGPTDATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEVRRSRNYSSNQQRAQLPCLWIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRAVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSR-------GALRQPNQPAVA 961
            +AGP    P+Y   D +PL+R+++ LFR K+ E +G D      GY  ++D+ + LN ++ + R TQ A+RR+L SLFPSWLP +F VMFS P PAFS RLNA  T +  QWLMGP K+ND+E                    +D G VG G G+LVERCR+LE AGCAS+C+N+CK     VPT+EFF KDMGL L MTPNYEDFSCQF+F KTPL +  DEAF   CF QCPS+       GA R  + P VA
Sbjct:   64 QAGPGTPAPSYAEIDAQPLNRVVMALFRRKMVESIGSDSQL--QGYPAIIDLTRRLNRQYQTARDTQLATRRILNSLFPSWLPGAFKVMFSAPLPAFSCRLNALATALTCQWLMGPCKVNDVE--------------------LDSGEVGSGMGVLVERCRYLEEAGCASICINSCK-----VPTQEFFEKDMGLPLTMTPNYEDFSCQFAFGKTPLPQSQDEAFSTPCFTQCPSKKRTFSDGGAGRPGDCPNVA 291          
BLAST of mRNA_Ecto-sp8_S_contig10264.440.1 vs. uniprot
Match: A0A383VZB0_TETOB (D27-like_C domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VZB0_TETOB)

HSP 1 Score: 248 bits (633), Expect = 3.110e-75
Identity = 129/285 (45.26%), Postives = 168/285 (58.95%), Query Frame = 2
Query:  185 LSYSAHYAQVIRGRAGPTDATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEVRRSRNYS-----------------------SNQQRAQLPCLWI-----------DDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRAVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGA 931
            L ++   A     +AG  +  P Y   D++PL+++++ LFR K+   +G D      GY+ ++D+ + LN  +   R+ Q  +R +L SLFPSWLP +F VMFSKP P FS +LNA  T +  QWLMGP K+ND+E+      S                         Q R QL C W+           DDG+VG G G+LVERCR+LE AGCAS+C+N+CK     VPT+EFF KDMGL L MTPNYEDFSCQFSF KTPL + +DEAF   CF+QCPSR A
Sbjct:   32 LRFTHSRAAAATRQAGTAEPVPDYAAIDSQPLNQVVMALFRRKMVAAIGSDSQL--SGYEAIIDLTRRLNASYSEARQVQLTTRGILNSLFPSWLPGAFKVMFSKPLPEFSCKLNALATALTCQWLMGPCKVNDVELDDGSVSSXXXXXXXXXXXXXXXXXXXXXXXQQQWRQQLTCQWLMGPCKVNNVELDDGSVGQGMGVLVERCRYLEQAGCASICINSCK-----VPTQEFFEKDMGLPLTMTPNYEDFSCQFSFGKTPLPQQLDEAFSTPCFQQCPSRAA 309          
BLAST of mRNA_Ecto-sp8_S_contig10264.440.1 vs. uniprot
Match: A0A2V0P122_9CHLO (D27-like_C domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P122_9CHLO)

HSP 1 Score: 245 bits (626), Expect = 2.120e-74
Identity = 121/236 (51.27%), Postives = 153/236 (64.83%), Query Frame = 2
Query:  224 RAGPTDATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEVRRSRNYSSNQQRAQLPCLWIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRAVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSR 925
            +AGP  A P Y   D +PL+R+++ LFR K+AE +G D      GY  ++D+ + LN ++P+ R TQ  +R +L SLFP WLP +F  MFS+P PA S RLNA+ T +  QWLMGP K+ND+E                    ID G VG G G+LVERCR+LE AGCAS+C+N+CK     VPT+EFF KDMGL L MTPNY+DFSCQF+F KTP  +  DEAF   CF QCPSR
Sbjct:   21 QAGPAAAAPDYAGVDAQPLNRVVMALFRRKMAEAIGSDSQL--QGYPAIIDLTRRLNRQYPTARDTQLTTRAILNSLFPGWLPGAFRAMFSRPLPALSCRLNAFATALTCQWLMGPCKVNDVE--------------------IDGGQVGAGMGVLVERCRYLEEAGCASICINSCK-----VPTQEFFEKDMGLPLTMTPNYDDFSCQFAFGKTPQPQAEDEAFSTPCFTQCPSR 229          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10264.440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEW1_ECTSI2.420e-16489.77D27-like_C domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5K8Y9_9PHAE4.750e-9553.89PROTEASOME_ALPHA_1 domain-containing protein n=1 T... [more]
A0A835ZDY9_9STRA1.170e-8656.72D27-like_C domain-containing protein n=1 Tax=Tribo... [more]
A0A8J4BT63_9CHLO2.010e-8053.19D27-like_C domain-containing protein n=2 Tax=Volvo... [more]
A8IC34_CHLRE1.930e-7850.98Predicted protein n=2 Tax=Chlamydomonas reinhardti... [more]
A0A7J7QQS2_9CHLO3.900e-7850.84D27-like_C domain-containing protein n=1 Tax=Scene... [more]
I0YX40_COCSC3.840e-7749.39D27-like_C domain-containing protein n=1 Tax=Cocco... [more]
A0A0D2MYG1_9CHLO9.180e-7750.59D27-like_C domain-containing protein n=1 Tax=Monor... [more]
A0A383VZB0_TETOB3.110e-7545.26D27-like_C domain-containing protein n=1 Tax=Tetra... [more]
A0A2V0P122_9CHLO2.120e-7451.27D27-like_C domain-containing protein n=1 Tax=Raphi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10264contigEcto-sp8_S_contig10264:2950..5600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score365.9
Seed ortholog evalue1.3e-98
Seed eggNOG ortholog2880.D8LEW1
Model size1371
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Domain of unknown function (DUF4033)
EggNOG OGs28YJ7@1,2R5D2@2759
Ec32 ortholog descriptionDomain of unknown function DUF4033
Ec32 orthologEc-21_005770.1
Cds size639
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10264.440.1prot_Ecto-sp8_S_contig10264.440.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10264 3314..5232 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143125.2460034-UTR-Ecto-sp8_S_contig10264:2949..33131681143125.2460034-UTR-Ecto-sp8_S_contig10264:2949..3313Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10264 2950..3313 +
1681143125.3169749-UTR-Ecto-sp8_S_contig10264:5232..56001681143125.3169749-UTR-Ecto-sp8_S_contig10264:5232..5600Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10264 5233..5600 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143125.2687976-CDS-Ecto-sp8_S_contig10264:3313..33781681143125.2687976-CDS-Ecto-sp8_S_contig10264:3313..3378Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10264 3314..3378 +
1681143125.2811728-CDS-Ecto-sp8_S_contig10264:3774..39911681143125.2811728-CDS-Ecto-sp8_S_contig10264:3774..3991Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10264 3775..3991 +
1681143125.2902765-CDS-Ecto-sp8_S_contig10264:4251..43681681143125.2902765-CDS-Ecto-sp8_S_contig10264:4251..4368Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10264 4252..4368 +
1681143125.2987983-CDS-Ecto-sp8_S_contig10264:4752..48331681143125.2987983-CDS-Ecto-sp8_S_contig10264:4752..4833Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10264 4753..4833 +
1681143125.3075569-CDS-Ecto-sp8_S_contig10264:5073..52321681143125.3075569-CDS-Ecto-sp8_S_contig10264:5073..5232Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10264 5074..5232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10264.440.1

>prot_Ecto-sp8_S_contig10264.440.1 ID=prot_Ecto-sp8_S_contig10264.440.1|Name=mRNA_Ecto-sp8_S_contig10264.440.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=213bp
MDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSS
RLNAWVTLVASQWLMGPSKLNDIEVRRSRNYSSNQQRAQLPCLWIDDGTV
GVGHGLLVERCRFLEAAGCASVCMNTCKARRRAVPTEEFFAKDMGLALEM
TPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGALRQPNQPAVAR
CHQIDIDEDGSS*
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mRNA from alignment at Ecto-sp8_S_contig10264:2950..5600+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10264.440.1 ID=mRNA_Ecto-sp8_S_contig10264.440.1|Name=mRNA_Ecto-sp8_S_contig10264.440.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2651bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10264:2950..5600+ (Ectocarpus species8 EcLAC_412)
GGTGTCGGACTTCCGAACCCCTGACCGACGATCCGCTTTGTTGCAAGGAT TTTGCCGGAATGTCTTCGATTCTTAATGGGTTTCGGTTTTTGGATATGTT GGGCTTTCTTCAATACACCTCTTTTGTCAAGCGAGTCGTTTGTAGATACG AAGCAACTTCACCCCACGGACAGCCTCTACAACTCTCTCTTACTCTGCGC ATTATGCACAGGTAATCCGAGGTCGCGCAGGGCCTACAGACGCGACGCCC ACCTACGACGACACGCGACCGTTGGATCGGATACTGCTGGGCCTGTTTCG GTCAAAGCTGGCGGAAGAGGTTGGGGGGGATGGTGATGCCTTCGAGCCTG GCTACGACGGCCTGATGGACATGATCAAGGTGTTGAACGAGAAGTTCCCT TCGAAGCGGAAGACGCAGGAAGCATCCAGGTACAGAGTGGGAGGGCGTCA GTAACACCGGTTGATTAGCGCCGGTGGCCATATATAGCGTCGGTGAAATT TACTTGGCGCAGGCTGAATCAACAGGTCATTCTGTGCATTGAATAGCGCG GTCCCTCTGAATAGCGCGGGTCGATGCGCCGGGAACATACCGCCGTTATG GAGCATCCCCCCCCTGTATTTGTTTGTTGATGGCATACATGTCAGCGCCG AAGAAGCGTTCGACGGAGCACCCGGTAGCCCAGTATCAGCGAGTATTGTT CACGTACTGGAGGAGTTAGAGGTTTGGCCATTATTGTCTCCTCCTTGCCC AGCTTCCACGCTTCAACCCTTCCACGAATTTCCTTTTCCTTCCCACGAAT CTCCTTTCTATTTACTCTGGTGCAGGCGAGTATTGAAGTCCCTCTTCCCT TCTTGGCTGCCGGCAAGCTTCGCGGTGATGTTCTCGAAGCCGTTCCCGGC CTTCTCTTCGCGCTTGAACGCCTGGGTGACCCTCGTCGCGTCTCAGTGGC TCATGGGGCCATCGAAGCTCAACGATATCGAGGTAAGGCGATCTCGTAAC TACAGCAGTAATCAGCAAAGAGCCCAATTGCCGTGTCTATGGGTCATACT TGGCGAGAGCGCGCGGAAAGCCGACCACACTTGAGTCCCGCCCTGTCCTT TGAGGTTGTAAATAGAGTTGTTTCGTCACGCCTAAGCGCCGTGGCAATAT ATTTTCTCGGCGAAACAACTTGCCTGGAATACGAAATTCGATCCCCTGTA CGGGCTTATTCTACGGCACAATGGATCGGGTGTTTATGCTGTCTCCGTAT TACATTGTGAAGCACCCGTCGAAACGTGTTTACGCTCCTTCTGTTGCGGC AGATCGATGATGGGACTGTGGGTGTCGGACACGGCCTGCTTGTGGAGCGG TGCAGGTTTCTGGAAGCTGCGGGGTGCGCGTCGGTCTGCATGAACACATG CAAGGCAAGGAGAAGAGCCGTGAACTGTAGAGTATCTAAGGGTGGCCGGA TTCAAATTCTCTCTCTCTCTCGTAACTGTTATCCCTTGTTCTCAGCCTCA ACTAGCGCATTCGGGTCGTCAGTGGAACGCGAGGTTCTTTCTGGCATTGT GTCCCAGCACCACAGAGCCACGTAGCCGGTGTGCGCATGGTTATGTGTTT GTGTTTGCGCTTCCCTCATTCAGCTAAATAGTTTGTGTGCATGTGCGTTC TCTAGTTCAGCTTCCCCGCACTCACTCGGCACGCTGGGAGTGCTTCCTTT CAGAGCGCCTCGCGTCTTGTTTTCTTGCGATTGAGTTACTTGTTTCACGT GTATGTTGTGTTCTTGAAACCTGCGATGGCATTTTTCTGTCCACGTGTTG TAGGTGCCGACGGAAGAATTCTTCGCCAAGGACATGGGATTGGCACTGGA GATGACGCCGAATTACGAGGATTTCAGTTGCCAGGTACGAAGTCGTAGCC GTGACGTTATCTCTTTTAGGACCGGCAGCAAGGACGCACTGGTTTTTGAT GCCCGATGGCAAACGCAGCAGCAAGTAATCTATTTTGGGTTTGTTGGTCG AATCGCTTTCATGTCTAAACCCATGACTATAGCCGGCGGGCACCCCACCT GGGCCGTGACCCAGTAGTTTCCAATGCCGTCGTTGAGCTTGTGGTACCCG TCGTTGTCCGTCCGTTTGTGCCAGTTTTCGTTCAACAAGACTCCGTTGGC GAGGGACATGGACGAGGCGTTTCGGGTGGCGTGTTTCGAGCAATGCCCGT CACGAGGAGCGCTGAGGCAGCCGAACCAGCCGGCAGTCGCACGGTGTCAT CAAATCGATATCGACGAGGACGGCAGTAGCTAAACACCTTTTACGTTTCT GGTTTCGTGCATGTTTTTTTTTATCTGAAAATATCGTTCCCTCAAAATGT TCTTTTGGTATGCATAGGCCAAGAGGTTCCGTATGACACGAGACCGAGCG GCTGCATTGGAAGGAGAAGGTCGGGCGTACAGTACATAGTTGGTGCCGTG GTGGGGCAGAGGTGTGGTTGCGGAGATGCAGACACGGCTCCGCAACTTGG GCAGTGCAATGGCGGATCCTTGCTTTAGAGTTACTTGGTGCGTAGTTTAC GCATGTGGGGAGGTTGGCATATAGAACAGAGGTGTAGAGCATAGAAGGAA GAAAGAAGGATCTTCAGCTGGCTTCTACAAGAACCAAACACAACATGTTA C
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10264:2950..5600+

>mRNA_Ecto-sp8_S_contig10264.440.1 ID=mRNA_Ecto-sp8_S_contig10264.440.1|Name=mRNA_Ecto-sp8_S_contig10264.440.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=639bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10264:2950..5600+ (Ectocarpus species8 EcLAC_412)
ATGGACATGATCAAGGTGTTGAACGAGAAGTTCCCTTCGAAGCGGAAGAC
GCAGGAAGCATCCAGGCGAGTATTGAAGTCCCTCTTCCCTTCTTGGCTGC
CGGCAAGCTTCGCGGTGATGTTCTCGAAGCCGTTCCCGGCCTTCTCTTCG
CGCTTGAACGCCTGGGTGACCCTCGTCGCGTCTCAGTGGCTCATGGGGCC
ATCGAAGCTCAACGATATCGAGGTAAGGCGATCTCGTAACTACAGCAGTA
ATCAGCAAAGAGCCCAATTGCCGTGTCTATGGATCGATGATGGGACTGTG
GGTGTCGGACACGGCCTGCTTGTGGAGCGGTGCAGGTTTCTGGAAGCTGC
GGGGTGCGCGTCGGTCTGCATGAACACATGCAAGGCAAGGAGAAGAGCCG
TGCCGACGGAAGAATTCTTCGCCAAGGACATGGGATTGGCACTGGAGATG
ACGCCGAATTACGAGGATTTCAGTTGCCAGTTTTCGTTCAACAAGACTCC
GTTGGCGAGGGACATGGACGAGGCGTTTCGGGTGGCGTGTTTCGAGCAAT
GCCCGTCACGAGGAGCGCTGAGGCAGCCGAACCAGCCGGCAGTCGCACGG
TGTCATCAAATCGATATCGACGAGGACGGCAGTAGCTAA
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