mRNA_Ecto-sp8_S_contig102131.349.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig102131.349.1 vs. uniprot
Match: D8LGQ2_ECTSI (U-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGQ2_ECTSI) HSP 1 Score: 109 bits (272), Expect = 3.430e-27 Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1
Query: 10 MLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVRG 156
MLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNV+G
Sbjct: 1 MLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVQG 49
BLAST of mRNA_Ecto-sp8_S_contig102131.349.1 vs. uniprot
Match: A0A7S3ZT12_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZT12_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 1.960e-12 Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1
Query: 1 ICKMLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVRG 156
I K+LLE SDKD N +GWTPLHEA ++NH+D + LLV+GA+ T K+ RG
Sbjct: 234 IVKVLLEAGSDKDLVNHLGWTPLHEAAFYNHVDVARTLLVYGANATKKDARG 285
BLAST of mRNA_Ecto-sp8_S_contig102131.349.1 vs. uniprot
Match: A0A1I4DZU2_9RHOB (Ankyrin repeat n=1 Tax=Loktanella salsilacus TaxID=195913 RepID=A0A1I4DZU2_9RHOB) HSP 1 Score: 53.9 bits (128), Expect = 5.220e-7 Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1
Query: 1 ICKMLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVRGGT 162
+C++LLE + DQ T L AC NH++TVQLLL HGADP +N +G T
Sbjct: 287 LCQVLLEAGASVDQLGDSSHTALMLACEENHVETVQLLLEHGADPHRENAKGRT 340
BLAST of mRNA_Ecto-sp8_S_contig102131.349.1 vs. uniprot
Match: A0A6B2LXD6_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LXD6_9EUKA) HSP 1 Score: 48.9 bits (115), Expect = 1.720e-6 Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 1
Query: 10 MLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNV 150
MLL++ ++ D P+ G T LH AC N D V LL+H ADPTIKNV
Sbjct: 1 MLLKHGANPDIPDKGGNTALHCACRNNFNDVVSSLLLHSADPTIKNV 47
BLAST of mRNA_Ecto-sp8_S_contig102131.349.1 vs. uniprot
Match: A0A519LUW6_9BURK (Ankyrin repeat domain-containing protein (Fragment) n=1 Tax=Acidovorax sp. TaxID=1872122 RepID=A0A519LUW6_9BURK) HSP 1 Score: 49.7 bits (117), Expect = 3.050e-6 Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1
Query: 1 ICKMLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVRGGT 162
I +LLEN + D + G TPL A ++ L++VQLLL GADPT+KN G T
Sbjct: 27 IIALLLENHAYIDAASPNGTTPLMMAAHYASLESVQLLLDEGADPTLKNQLGLT 80
BLAST of mRNA_Ecto-sp8_S_contig102131.349.1 vs. uniprot
Match: A0A158Q9G7_ENTVE (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A158Q9G7_ENTVE) HSP 1 Score: 51.6 bits (122), Expect = 3.500e-6 Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 1
Query: 1 ICKMLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVRG 156
+ ML EN + + N G TPLH+A NH V+ LL+HGADP+IK+ G
Sbjct: 100 VVSMLCENGASVNALNAKGETPLHDAVRRNHDGVVRNLLLHGADPSIKDANG 151
BLAST of mRNA_Ecto-sp8_S_contig102131.349.1 vs. uniprot
Match: F9W604_TRYCI (WGS project CAEQ00000000 data, annotated contig 140 (Fragment) n=1 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=F9W604_TRYCI) HSP 1 Score: 50.8 bits (120), Expect = 3.630e-6 Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 1
Query: 7 KMLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVRGGT 162
++LL +D D N +G TPLH A +T+ LL+HGADPTI+N RG T
Sbjct: 77 RVLLGVGADIDAVNAVGATPLHCATLCGSCETINELLLHGADPTIRNQRGHT 128
BLAST of mRNA_Ecto-sp8_S_contig102131.349.1 vs. uniprot
Match: F9WIC5_TRYCI (WGS project CAEQ00000000 data, annotated contig 766 n=1 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=F9WIC5_TRYCI) HSP 1 Score: 50.8 bits (120), Expect = 6.490e-6 Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 1
Query: 7 KMLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVRGGT 162
++LL +D D N +G TPLH A +T+ LL+HGADPTI+N RG T
Sbjct: 77 RVLLGVGADIDAVNAVGATPLHCATLCGSCETINELLLHGADPTIRNQRGHT 128
BLAST of mRNA_Ecto-sp8_S_contig102131.349.1 vs. uniprot
Match: F9WIC3_TRYCI (WGS project CAEQ00000000 data, annotated contig 766 n=1 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=F9WIC3_TRYCI) HSP 1 Score: 50.8 bits (120), Expect = 6.490e-6 Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 1
Query: 7 KMLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVRGGT 162
++LL +D D N +G TPLH A +T+ LL+HGADPTI+N RG T
Sbjct: 77 RVLLGVGADIDAVNAVGATPLHCATLCGSCETINELLLHGADPTIRNQRGHT 128
BLAST of mRNA_Ecto-sp8_S_contig102131.349.1 vs. uniprot
Match: A0A0Q4RT54_9BURK (Uncharacterized protein n=2 Tax=Acidovorax sp. Leaf78 TaxID=1736237 RepID=A0A0Q4RT54_9BURK) HSP 1 Score: 49.7 bits (117), Expect = 1.200e-5 Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1
Query: 1 ICKMLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVRGGT 162
I +LLEN + D + G TPL A ++ L++VQLLL GADPT+KN G T
Sbjct: 132 IIALLLENHAYIDAASPNGTTPLMMAAHYASLESVQLLLDEGADPTLKNQLGLT 185 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102131.349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig102131.349.1 >prot_Ecto-sp8_S_contig102131.349.1 ID=prot_Ecto-sp8_S_contig102131.349.1|Name=mRNA_Ecto-sp8_S_contig102131.349.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=51bp MLLENESDKDQPNGMGWTPLHEACYFNHLDTVQLLLVHGADPTIKNVRGGback to top mRNA from alignment at Ecto-sp8_S_contig102131:373..534- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig102131.349.1 ID=mRNA_Ecto-sp8_S_contig102131.349.1|Name=mRNA_Ecto-sp8_S_contig102131.349.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102131:373..534- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102131:373..534- >mRNA_Ecto-sp8_S_contig102131.349.1 ID=mRNA_Ecto-sp8_S_contig102131.349.1|Name=mRNA_Ecto-sp8_S_contig102131.349.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102131:373..534- (Ectocarpus species8 EcLAC_412)back to top |