mRNA_Ecto-sp8_S_contig99020.31744.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig99020.31744.1
Unique NamemRNA_Ecto-sp8_S_contig99020.31744.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig99020.31744.1 vs. uniprot
Match: A0A7S2FYZ9_9STRA (CCR4-NOT transcription complex subunit 11 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FYZ9_9STRA)

HSP 1 Score: 172 bits (437), Expect = 8.110e-52
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 1 
Query:    1 PMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV 279
            PMIAIECLLKLMSSSQ+ EYLSALVNMDMSLHSMEVVNRLTT+VDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV
Sbjct:  169 PMIAIECLLKLMSSSQLNEYLSALVNMDMSLHSMEVVNRLTTAVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV 261
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BLAST of mRNA_Ecto-sp8_S_contig99020.31744.1 vs. uniprot
Match: D7FJ18_ECTSI (CCR4-NOT transcription complex subunit 11 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ18_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 1.140e-51
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 
Query:    1 PMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV 279
            PMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV
Sbjct:  327 PMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV 419
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BLAST of mRNA_Ecto-sp8_S_contig99020.31744.1 vs. uniprot
Match: A0A3M6VN27_9STRA (CCR4-NOT transcription complex subunit 11 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VN27_9STRA)

HSP 1 Score: 172 bits (436), Expect = 6.620e-51
Identity = 89/93 (95.70%), Postives = 93/93 (100.00%), Query Frame = 1 
Query:    1 PMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV 279
            PM+AI+CLLKLMSS+QITEYLSALVNMDMSLHSMEVVNRLTT+VDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV
Sbjct:  237 PMLAIDCLLKLMSSNQITEYLSALVNMDMSLHSMEVVNRLTTAVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV 329
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BLAST of mRNA_Ecto-sp8_S_contig99020.31744.1 vs. uniprot
Match: A0A8K1CP59_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP59_PYTOL)

HSP 1 Score: 174 bits (441), Expect = 6.780e-51
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 1 
Query:    1 PMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV 279
            PMIAIECLLKLMSS+QITEYLSALVNMDMSLHSMEVVNRLTT+VDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV
Sbjct:  314 PMIAIECLLKLMSSNQITEYLSALVNMDMSLHSMEVVNRLTTAVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV 406
[Close]
BLAST of mRNA_Ecto-sp8_S_contig99020.31744.1 vs. uniprot
Match: A0A2D4BNE6_PYTIN (CCR4-NOT transcription complex subunit 11 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNE6_PYTIN)

HSP 1 Score: 174 bits (441), Expect = 7.690e-51
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 1 
Query:    1 PMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV 279
            PMIAIECLLKLMSS+QITEYLSALVNMDMSLHSMEVVNRLTT+VDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV
Sbjct:  320 PMIAIECLLKLMSSNQITEYLSALVNMDMSLHSMEVVNRLTTAVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV 412
[Close]
BLAST of mRNA_Ecto-sp8_S_contig99020.31744.1 vs. uniprot
Match: A0A7S1CGK3_9STRA (CCR4-NOT transcription complex subunit 11 n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CGK3_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.090e-50
Identity = 87/93 (93.55%), Postives = 91/93 (97.85%), Query Frame = 1 
Query:    1 PMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV 279
            PM+AIECLLKLM S+QI+EYLSALVNMDMSLHSMEVVNRLTT+VDLP EFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV
Sbjct:  111 PMVAIECLLKLMPSTQISEYLSALVNMDMSLHSMEVVNRLTTAVDLPPEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV 203
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BLAST of mRNA_Ecto-sp8_S_contig99020.31744.1 vs. uniprot
Match: A0A485LQJ1_9STRA (CCR4-NOT transcription complex subunit 11 n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A485LQJ1_9STRA)

HSP 1 Score: 172 bits (436), Expect = 1.440e-50
Identity = 90/93 (96.77%), Postives = 93/93 (100.00%), Query Frame = 1 
Query:    1 PMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV 279
            PMIAIECLLKLMSS+QITEYLSALVNMDMSLHSMEVVNRLTT+VDLPTEFIHLYISNCISSCENIKDKYMQ+RLVRLVCVFLQSLIRNKIINV
Sbjct:  270 PMIAIECLLKLMSSNQITEYLSALVNMDMSLHSMEVVNRLTTAVDLPTEFIHLYISNCISSCENIKDKYMQSRLVRLVCVFLQSLIRNKIINV 362
[Close]
BLAST of mRNA_Ecto-sp8_S_contig99020.31744.1 vs. uniprot
Match: A0A067CRR8_SAPPC (CCR4-NOT transcription complex subunit 11 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CRR8_SAPPC)

HSP 1 Score: 173 bits (438), Expect = 1.700e-50
Identity = 90/93 (96.77%), Postives = 93/93 (100.00%), Query Frame = 1 
Query:    1 PMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV 279
            PMIAIECLLKLM+S+QITEYLSALVNMDMSLHSMEVVNRLTT+VDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV
Sbjct:  309 PMIAIECLLKLMTSNQITEYLSALVNMDMSLHSMEVVNRLTTAVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV 401
[Close]
BLAST of mRNA_Ecto-sp8_S_contig99020.31744.1 vs. uniprot
Match: K3XBZ3_GLOUD (CCR4-NOT transcription complex subunit 11 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBZ3_GLOUD)

HSP 1 Score: 173 bits (438), Expect = 1.810e-50
Identity = 90/93 (96.77%), Postives = 93/93 (100.00%), Query Frame = 1 
Query:    1 PMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV 279
            PMIAI+CLLKLMSS+QITEYLSALVNMDMSLHSMEVVNRLTT+VDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV
Sbjct:  312 PMIAIDCLLKLMSSNQITEYLSALVNMDMSLHSMEVVNRLTTAVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV 404
[Close]
BLAST of mRNA_Ecto-sp8_S_contig99020.31744.1 vs. uniprot
Match: F0W6B0_9STRA (CCR4-NOT transcription complex subunit 11 n=2 Tax=Albugo TaxID=65356 RepID=F0W6B0_9STRA)

HSP 1 Score: 174 bits (441), Expect = 2.490e-50
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 1 
Query:    1 PMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV 279
            PMIAIECLLKLMSS+QITEYLSALVNMDMSLHSMEVVNRLTT+VDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV
Sbjct:  381 PMIAIECLLKLMSSNQITEYLSALVNMDMSLHSMEVVNRLTTAVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV 473
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99020.31744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2FYZ9_9STRA8.110e-5296.77CCR4-NOT transcription complex subunit 11 n=1 Tax=... [more]
D7FJ18_ECTSI1.140e-51100.00CCR4-NOT transcription complex subunit 11 n=2 Tax=... [more]
A0A3M6VN27_9STRA6.620e-5195.70CCR4-NOT transcription complex subunit 11 n=1 Tax=... [more]
A0A8K1CP59_PYTOL6.780e-5197.85Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BNE6_PYTIN7.690e-5197.85CCR4-NOT transcription complex subunit 11 n=1 Tax=... [more]
A0A7S1CGK3_9STRA1.090e-5093.55CCR4-NOT transcription complex subunit 11 n=1 Tax=... [more]
A0A485LQJ1_9STRA1.440e-5096.77CCR4-NOT transcription complex subunit 11 n=7 Tax=... [more]
A0A067CRR8_SAPPC1.700e-5096.77CCR4-NOT transcription complex subunit 11 n=3 Tax=... [more]
K3XBZ3_GLOUD1.810e-5096.77CCR4-NOT transcription complex subunit 11 n=1 Tax=... [more]
F0W6B0_9STRA2.490e-5097.85CCR4-NOT transcription complex subunit 11 n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99020contigEcto-sp8_S_contig99020:1..558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score172.9
Seed ortholog evalue6.7e-41
Seed eggNOG ortholog2880.D7FJ18
Model size279
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.gene silencing by RNA
EggNOG OGsCOG3823@1,KOG4508@2759
Cds size276
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145358.749392-UTR-Ecto-sp8_S_contig99020:0..31681145358.749392-UTR-Ecto-sp8_S_contig99020:0..3Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig99020 1..3 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145358.7636638-CDS-Ecto-sp8_S_contig99020:3..1051681145358.7636638-CDS-Ecto-sp8_S_contig99020:3..105Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99020 4..105 +
1681145358.7767591-CDS-Ecto-sp8_S_contig99020:384..5581681145358.7767591-CDS-Ecto-sp8_S_contig99020:384..558Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99020 385..558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99020.31744.1prot_Ecto-sp8_S_contig99020.31744.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig99020 4..558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig99020.31744.1

>prot_Ecto-sp8_S_contig99020.31744.1 ID=prot_Ecto-sp8_S_contig99020.31744.1|Name=mRNA_Ecto-sp8_S_contig99020.31744.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=92bp
MIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFI
HLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV
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mRNA from alignment at Ecto-sp8_S_contig99020:1..558+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig99020.31744.1 ID=mRNA_Ecto-sp8_S_contig99020.31744.1|Name=mRNA_Ecto-sp8_S_contig99020.31744.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=558bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99020:1..558+ (Ectocarpus species8 EcLAC_412)
CCGATGATCGCGATCGAGTGCCTGTTAAAGCTCATGTCCTCCAGCCAGAT
CACGGAGTACCTGAGCGCCTTGGTGAACATGGACATGTCGCTGCACTCAA
TGGAGGTGCGTGAGTGTTCGGCAGCGGTAGATAGTTCGCCGACAGTCTCG
GCGAGACTAGGCAAGGTCTAATGGTCTAATGGTCTAATGTGACAACCGAC
GAGTAGGTGACGCCTCTTGAACAAACTCCCTACGGCCGTAGACATCGATG
GTCTGAGTGTTTCGAAGACGAAAGATGGGCACAAAATAGTCGATGAAATA
TATCGAGAAAGTAAGTTGGCGTCGCCTGACCCTCCCCTTGATGCCGGGCG
GTCCCCTGCCTGCCTGTCGTGGATGCCGTACCAGGTGGTGAATCGGCTGA
CGACCAGCGTTGATCTGCCAACAGAATTCATACACCTCTACATCTCAAAT
TGCATCTCAAGCTGCGAAAACATCAAGGACAAGTACATGCAGAACCGATT
GGTTCGGCTGGTGTGCGTGTTTTTGCAGTCTCTCATCAGGAATAAGATCA
TCAATGTC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig99020:1..558+

>mRNA_Ecto-sp8_S_contig99020.31744.1 ID=mRNA_Ecto-sp8_S_contig99020.31744.1|Name=mRNA_Ecto-sp8_S_contig99020.31744.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99020:1..558+ (Ectocarpus species8 EcLAC_412)
ATGATCGCGATCGAGTGCCTGTTAAAGCTCATGTCCTCCAGCCAGATCAC
GGAGTACCTGAGCGCCTTGGTGAACATGGACATGTCGCTGCACTCAATGG
AGGTGGTGAATCGGCTGACGACCAGCGTTGATCTGCCAACAGAATTCATA
CACCTCTACATCTCAAATTGCATCTCAAGCTGCGAAAACATCAAGGACAA
GTACATGCAGAACCGATTGGTTCGGCTGGTGTGCGTGTTTTTGCAGTCTC
TCATCAGGAATAAGATCATCAATGTC
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