mRNA_Ecto-sp8_S_contig98798.31709.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig98798.31709.1
Unique NamemRNA_Ecto-sp8_S_contig98798.31709.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig98798.31709.1 vs. uniprot
Match: A0A6H5KMQ7_9PHAE (PlsC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMQ7_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 8.400e-59
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:    1 VLFRSKDENSFAVDKPEQAKIMEKVKAHVESDGCLCLFPEGKINRNPAVLCPFRRGTFGVAEEMNMAVVSLTTVGCDESWPRESPVGGLPA 273
            VLFRSKDENSFAVDKPEQAKIMEKVKAHVESDGCLCLFPEGKINRNPAVLCPFRRGTFGVAEEMNMAVVSLTTVGCDESWPRESPVGGLPA
Sbjct:  136 VLFRSKDENSFAVDKPEQAKIMEKVKAHVESDGCLCLFPEGKINRNPAVLCPFRRGTFGVAEEMNMAVVSLTTVGCDESWPRESPVGGLPA 226
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BLAST of mRNA_Ecto-sp8_S_contig98798.31709.1 vs. uniprot
Match: A0A835Z6S5_9STRA (Acyltransferase-like protein, copy 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6S5_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 7.450e-19
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:    1 VLFRSKDENSFAVDKPEQAKIMEKVKAHVESDGCLCLFPEGKINRNPAVLCPFRRGTFGVAEEMNMAVVSLTTVGCDESWPRESPVGGLP 270
            V F +  E  F+VDK   A +ME V+AHV   GCL +FPEG++NR+P  L PFR  +  +A +  MAV ++T +G    WPR S +GG+P
Sbjct:  138 VHFLTPREEEFSVDKMIMAGVMELVRAHVARGGCLSIFPEGRVNRSPDTLLPFRNSSLAIAADEGMAVATMTQLGNAACWPRASAMGGVP 227
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BLAST of mRNA_Ecto-sp8_S_contig98798.31709.1 vs. uniprot
Match: S9W582_9TRYP (Acyltransferase, putative n=1 Tax=Angomonas deanei TaxID=59799 RepID=S9W582_9TRYP)

HSP 1 Score: 82.8 bits (203), Expect = 7.450e-17
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    1 VLFRSKDENSFAVDKPEQAKIMEKVKAHVESDGCLCLFPEGKINRNPAVLCPFRRGTFGVAEEMNMAVVSLTTVGCDESWPRESPVGGLPA 273
            V F+S ++ +F VDK  QA +   V  H+E+ G L +FPEG +N+N AVL PFR GTF    E  M +  + +VG +++WP +   GG PA
Sbjct:  178 VFFKSDEDGNFQVDKERQAAVQVHVNQHIENGGNLAIFPEGAVNKNTAVLKPFRFGTFATIFEHKMPLYYVVSVGNEKTWPPQCVSGGFPA 268
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BLAST of mRNA_Ecto-sp8_S_contig98798.31709.1 vs. uniprot
Match: G0TTG1_TRYVY (Putative acyltransferase n=1 Tax=Trypanosoma vivax (strain Y486) TaxID=1055687 RepID=G0TTG1_TRYVY)

HSP 1 Score: 67.4 bits (163), Expect = 2.770e-11
Identity = 39/90 (43.33%), Postives = 47/90 (52.22%), Query Frame = 1 
Query:    1 VLFRSKDENSFAVDKPEQAKIMEKVKAHVESDGCLCLFPEGKINRNPAVLCPFRRGTFGVAEEMNMAVVSLTTVGCDESWPRESPVGGLP 270
            V F S D +SF VDK +QA I       + S G LC+FPEG +NR P VL  FR GTF +       V  +   GCD  WP    + GLP
Sbjct:  159 VYFTSPDVDSFGVDKEKQAVISVITDEFLTSQGNLCIFPEGVMNRTPEVLRDFRFGTFNLILRHGARVYYMAHCGCDRVWPPS--LKGLP 246
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BLAST of mRNA_Ecto-sp8_S_contig98798.31709.1 vs. uniprot
Match: A0A0M9G1R4_9TRYP (Putative mitochondrial acyltransferase n=1 Tax=Leptomonas pyrrhocoris TaxID=157538 RepID=A0A0M9G1R4_9TRYP)

HSP 1 Score: 54.7 bits (130), Expect = 1.100e-6
Identity = 32/92 (34.78%), Postives = 48/92 (52.17%), Query Frame = 1 
Query:    1 VLFRSKDENSFAVDKPEQAKIMEKVKAHVESDGCLCLFPEGKINRNPAVLCPFRRGTFGVAEEMNMAVVSLTTVGCDESW-PRESPVGGLPA 273
            V F +++  SF V+K +QA ++  V+A +     +C FPEG +NR+PAVL  FR G+F +       +      G  E W P    + G PA
Sbjct:  159 VYFANENSPSFHVNKEKQAAVVADVEAWLGKGNNMCFFPEGVMNRDPAVLTDFRLGSFNMILAHKTPLYYFVFYGDHEVWSPSWKGLPGFPA 250
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig98798.31709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KMQ7_9PHAE8.400e-59100.00PlsC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z6S5_9STRA7.450e-1945.56Acyltransferase-like protein, copy 2 n=1 Tax=Tribo... [more]
S9W582_9TRYP7.450e-1742.86Acyltransferase, putative n=1 Tax=Angomonas deanei... [more]
G0TTG1_TRYVY2.770e-1143.33Putative acyltransferase n=1 Tax=Trypanosoma vivax... [more]
A0A0M9G1R4_9TRYP1.100e-634.78Putative mitochondrial acyltransferase n=1 Tax=Lep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig98798contigEcto-sp8_S_contig98798:4..561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score177.9
Seed ortholog evalue2.1e-42
Seed eggNOG ortholog2880.D7FWP2
Model size273
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Acyltransferase
EggNOG OGs2DZHH@1,2S71D@2759
Cds size273
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145356.0224907-CDS-Ecto-sp8_S_contig98798:3..2041681145356.0224907-CDS-Ecto-sp8_S_contig98798:3..204Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98798 4..204 -
1681145356.0339386-CDS-Ecto-sp8_S_contig98798:489..5611681145356.0339386-CDS-Ecto-sp8_S_contig98798:489..561Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98798 490..561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig98798.31709.1prot_Ecto-sp8_S_contig98798.31709.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig98798 4..561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig98798.31709.1

>prot_Ecto-sp8_S_contig98798.31709.1 ID=prot_Ecto-sp8_S_contig98798.31709.1|Name=mRNA_Ecto-sp8_S_contig98798.31709.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=91bp
VLFRSKDENSFAVDKPEQAKIMEKVKAHVESDGCLCLFPEGKINRNPAVL
CPFRRGTFGVAEEMNMAVVSLTTVGCDESWPRESPVGGLPA
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mRNA from alignment at Ecto-sp8_S_contig98798:4..561-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig98798.31709.1 ID=mRNA_Ecto-sp8_S_contig98798.31709.1|Name=mRNA_Ecto-sp8_S_contig98798.31709.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=558bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98798:4..561- (Ectocarpus species8 EcLAC_412)
GTTCTCTTCCGAAGCAAGGACGAGAATTCGTTCGCCGTGGACAAGCCGGA
GCAAGCGAAGATCATGGAGAAGGTGAACTCGTTTTCTTGTGCTACGCTCG
CTTGCGTTTGTCGTATTTACACGTGTGCACTTCAAAGGACAGGAGTAGAG
CTGCTGCTTGAGAGTGTCCGACTGGGTTGTGCCCAGACACGAAAACATTG
AACATAGTGCCTGTAGTACGCATACACGTACTAAGAACTTACTTCATTTT
TTGCGGTCATTGCCGCGATTTTGCGTAAGATGCGAAAGTAGGCGGCAGCA
CCGCACTCGAGCGCTCTCCTCGAAGCTCCAACCAGCGTAACCCCGCCTAT
CCCCCAGGTGAAAGCACACGTCGAGTCAGACGGGTGCCTGTGCCTGTTCC
CCGAGGGCAAAATCAACCGCAACCCTGCAGTCCTCTGCCCCTTCCGAAGG
GGCACGTTCGGGGTGGCGGAAGAGATGAACATGGCCGTGGTGAGCCTCAC
GACGGTCGGGTGCGACGAGTCTTGGCCCAGAGAGTCCCCGGTCGGGGGCC
TGCCGGCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig98798:4..561-

>mRNA_Ecto-sp8_S_contig98798.31709.1 ID=mRNA_Ecto-sp8_S_contig98798.31709.1|Name=mRNA_Ecto-sp8_S_contig98798.31709.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98798:4..561- (Ectocarpus species8 EcLAC_412)
GTTCTCTTCCGAAGCAAGGACGAGAATTCGTTCGCCGTGGACAAGCCGGA
GCAAGCGAAGATCATGGAGAAGGTGAAAGCACACGTCGAGTCAGACGGGT
GCCTGTGCCTGTTCCCCGAGGGCAAAATCAACCGCAACCCTGCAGTCCTC
TGCCCCTTCCGAAGGGGCACGTTCGGGGTGGCGGAAGAGATGAACATGGC
CGTGGTGAGCCTCACGACGGTCGGGTGCGACGAGTCTTGGCCCAGAGAGT
CCCCGGTCGGGGGCCTGCCGGCC
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