mRNA_Ecto-sp8_S_contig98456.31660.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig98456.31660.1
Unique NamemRNA_Ecto-sp8_S_contig98456.31660.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig98456.31660.1 vs. uniprot
Match: A0A6H5KKR9_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKR9_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 3.830e-48
Identity = 102/122 (83.61%), Postives = 105/122 (86.07%), Query Frame = 1 
Query:    1 GVAGEGRGDSACERKNSRCSRVSSXXXXXXXXMSSCSGVRGSSEAGQRQREDKAPPTDAWRSPSASASTPATVRRAGAALPQATAAGWGEDRSRSSAPPSWLDAGVFLRGVSALHLRGGVRA 366
            GVAG GRG   CE KNSRCS     XXXXXXX SSCSGVRGSSEAGQ+QRED+APP DAWRSPSASASTPAT  RAGAA PQATAAGW ED SRSSAPPSWLDAGVFLRGVSAL+LRGGVRA
Sbjct:   76 GVAGGGRGGGRCELKNSRCSXX---XXXXXXXKSSCSGVRGSSEAGQKQREDEAPPADAWRSPSASASTPATAPRAGAASPQATAAGWREDLSRSSAPPSWLDAGVFLRGVSALNLRGGVRA 194
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig98456.31660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKR9_9PHAE3.830e-4883.61PPM-type phosphatase domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig98456contigEcto-sp8_S_contig98456:46..411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size367
Hectar predicted targeting categoryother localisation
Exons1
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145352.3513963-CDS-Ecto-sp8_S_contig98456:45..4111681145352.3513963-CDS-Ecto-sp8_S_contig98456:45..411Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98456 46..411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig98456.31660.1prot_Ecto-sp8_S_contig98456.31660.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig98456 46..411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig98456.31660.1

>prot_Ecto-sp8_S_contig98456.31660.1 ID=prot_Ecto-sp8_S_contig98456.31660.1|Name=mRNA_Ecto-sp8_S_contig98456.31660.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=122bp
GVAGEGRGDSACERKNSRCSRVSSSSSSSDDDMSSCSGVRGSSEAGQRQR
EDKAPPTDAWRSPSASASTPATVRRAGAALPQATAAGWGEDRSRSSAPPS
WLDAGVFLRGVSALHLRGGVRA
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mRNA from alignment at Ecto-sp8_S_contig98456:46..411+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig98456.31660.1 ID=mRNA_Ecto-sp8_S_contig98456.31660.1|Name=mRNA_Ecto-sp8_S_contig98456.31660.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=366bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98456:46..411+ (Ectocarpus species8 EcLAC_412)
GGTGTAGCAGGAGAGGGGAGGGGAGACAGCGCGTGCGAGCGAAAAAACAG
CAGGTGCAGCAGAGTCAGCAGCAGCAGCAGCAGCAGCGACGACGACATGA
GCAGTTGCAGCGGTGTCCGTGGTTCTTCTGAAGCCGGGCAGAGGCAGAGG
GAGGACAAGGCACCTCCGACTGATGCTTGGCGATCACCGTCAGCCTCCGC
ATCCACGCCTGCAACAGTACGTCGAGCAGGCGCGGCATTACCGCAGGCCA
CGGCAGCAGGCTGGGGAGAAGACCGATCAAGATCATCGGCGCCTCCGTCT
TGGTTAGACGCCGGGGTTTTCCTGCGCGGGGTTTCGGCGCTACACTTGCG
GGGAGGGGTGAGGGCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig98456:46..411+

>mRNA_Ecto-sp8_S_contig98456.31660.1 ID=mRNA_Ecto-sp8_S_contig98456.31660.1|Name=mRNA_Ecto-sp8_S_contig98456.31660.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98456:46..411+ (Ectocarpus species8 EcLAC_412)
GGTGTAGCAGGAGAGGGGAGGGGAGACAGCGCGTGCGAGCGAAAAAACAG
CAGGTGCAGCAGAGTCAGCAGCAGCAGCAGCAGCAGCGACGACGACATGA
GCAGTTGCAGCGGTGTCCGTGGTTCTTCTGAAGCCGGGCAGAGGCAGAGG
GAGGACAAGGCACCTCCGACTGATGCTTGGCGATCACCGTCAGCCTCCGC
ATCCACGCCTGCAACAGTACGTCGAGCAGGCGCGGCATTACCGCAGGCCA
CGGCAGCAGGCTGGGGAGAAGACCGATCAAGATCATCGGCGCCTCCGTCT
TGGTTAGACGCCGGGGTTTTCCTGCGCGGGGTTTCGGCGCTACACTTGCG
GGGAGGGGTGAGGGCC
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