mRNA_Ecto-sp8_S_contig98404.31647.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig98404.31647.1
Unique NamemRNA_Ecto-sp8_S_contig98404.31647.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig98404.31647.1 vs. uniprot
Match: A0A2A4VI94_9PROT (Cbb3-type cytochrome oxidase assembly protein CcoS n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2A4VI94_9PROT)

HSP 1 Score: 68.9 bits (167), Expect = 1.500e-14
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 MNLILLLLPVALLLGFLGLCAFFWSLKSGQYDDPEGAAQRILNDD 135
            MN+++ L+P+ALLLG LGL AF WSLKSGQYDD EGAAQRIL DD
Sbjct:    1 MNILIYLIPIALLLGLLGLAAFAWSLKSGQYDDLEGAAQRILMDD 45
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BLAST of mRNA_Ecto-sp8_S_contig98404.31647.1 vs. uniprot
Match: A0A2A4R1V8_9HYPH (Cbb3-type cytochrome oxidase assembly protein CcoS n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2A4R1V8_9HYPH)

HSP 1 Score: 67.0 bits (162), Expect = 7.920e-14
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 MNLILLLLPVALLLGFLGLCAFFWSLKSGQYDDPEGAAQRILNDD 135
            M+ +L L+P+AL LG +GL AF+WSLKSGQYDD EGAAQRIL DD
Sbjct:    1 MSHVLFLIPIALFLGLIGLAAFYWSLKSGQYDDLEGAAQRILEDD 45
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BLAST of mRNA_Ecto-sp8_S_contig98404.31647.1 vs. uniprot
Match: A0A3B8XWS9_9HYPH (Cbb3-type cytochrome oxidase assembly protein CcoS n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A3B8XWS9_9HYPH)

HSP 1 Score: 67.0 bits (162), Expect = 9.550e-14
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 MNLILLLLPVALLLGFLGLCAFFWSLKSGQYDDPEGAAQRILNDD 135
            MN+++LL+PVALLLG LGL AF WSLK+GQYDD EGAA+RIL D+
Sbjct:    1 MNILILLVPVALLLGLLGLVAFLWSLKAGQYDDLEGAAERILFDE 45
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BLAST of mRNA_Ecto-sp8_S_contig98404.31647.1 vs. uniprot
Match: A0A231V0J2_9HYPH (Cytochrome oxidase maturation protein, cbb3-type n=1 Tax=Notoacmeibacter marinus TaxID=1876515 RepID=A0A231V0J2_9HYPH)

HSP 1 Score: 66.6 bits (161), Expect = 1.100e-13
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 MNLILLLLPVALLLGFLGLCAFFWSLKSGQYDDPEGAAQRILNDD 135
            MN+ILLLLP+AL+LGF GL AF WSL+SGQ+DD +GAA R+L+DD
Sbjct:    1 MNVILLLLPIALMLGFAGLVAFVWSLRSGQFDDLDGAAWRVLDDD 45
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BLAST of mRNA_Ecto-sp8_S_contig98404.31647.1 vs. uniprot
Match: A0A1H0UFL8_9RHOB (Cbb3-type cytochrome oxidase assembly protein CcoS n=2 Tax=root TaxID=1 RepID=A0A1H0UFL8_9RHOB)

HSP 1 Score: 66.6 bits (161), Expect = 1.180e-13
Identity = 29/45 (64.44%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 MNLILLLLPVALLLGFLGLCAFFWSLKSGQYDDPEGAAQRILNDD 135
            MN++ +L+PV+++LG LGLCAF W+LKSGQYDDP+GA+ R+L DD
Sbjct:    1 MNVLFILIPVSVILGGLGLCAFLWTLKSGQYDDPQGASARVLLDD 45
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BLAST of mRNA_Ecto-sp8_S_contig98404.31647.1 vs. uniprot
Match: A0A6I7P5I0_9PROT (Cbb3-type cytochrome oxidase assembly protein CcoS n=1 Tax=Geminicoccaceae bacterium TaxID=2448052 RepID=A0A6I7P5I0_9PROT)

HSP 1 Score: 66.2 bits (160), Expect = 1.930e-13
Identity = 30/45 (66.67%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 MNLILLLLPVALLLGFLGLCAFFWSLKSGQYDDPEGAAQRILNDD 135
            M++++ L+PVAL LGFLGL AF W+L+SGQ+DDP+GAA+RIL DD
Sbjct:    1 MDVLIYLIPVALFLGFLGLAAFLWALRSGQFDDPQGAAERILYDD 45
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BLAST of mRNA_Ecto-sp8_S_contig98404.31647.1 vs. uniprot
Match: A0A2N3C2G6_9PROT (Cbb3-type cytochrome oxidase assembly protein CcoS n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-3 TaxID=2013666 RepID=A0A2N3C2G6_9PROT)

HSP 1 Score: 66.2 bits (160), Expect = 1.980e-13
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 MNLILLLLPVALLLGFLGLCAFFWSLKSGQYDDPEGAAQRILNDD 135
            MN+++ L+P ALLLG LGL AF WSL+SGQYDD EGAA+RIL DD
Sbjct:    1 MNILIFLVPAALLLGLLGLAAFLWSLRSGQYDDLEGAAERILYDD 45
[Close]
BLAST of mRNA_Ecto-sp8_S_contig98404.31647.1 vs. uniprot
Match: A0A2N3E5R6_9PROT (Cbb3-type cytochrome oxidase assembly protein CcoS n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-11 TaxID=2013657 RepID=A0A2N3E5R6_9PROT)

HSP 1 Score: 65.9 bits (159), Expect = 3.330e-13
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 MNLILLLLPVALLLGFLGLCAFFWSLKSGQYDDPEGAAQRILNDD 135
            MN+++ L+P ALLLG LGL AF WSLKSGQYDD EGAA+RIL DD
Sbjct:    1 MNILVFLIPAALLLGLLGLGAFLWSLKSGQYDDLEGAAERILFDD 45
[Close]
BLAST of mRNA_Ecto-sp8_S_contig98404.31647.1 vs. uniprot
Match: A0A2D8RSV0_9HYPH (Cbb3-type cytochrome oxidase assembly protein CcoS n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2D8RSV0_9HYPH)

HSP 1 Score: 65.5 bits (158), Expect = 3.630e-13
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 MNLILLLLPVALLLGFLGLCAFFWSLKSGQYDDPEGAAQRILNDD 135
            MN+++ L+P ALLLG LGL AF WSLK+GQYDD EGAA+RIL DD
Sbjct:    1 MNILIFLVPAALLLGLLGLVAFLWSLKTGQYDDLEGAAERILFDD 45
[Close]
BLAST of mRNA_Ecto-sp8_S_contig98404.31647.1 vs. uniprot
Match: A0A849E7M3_9HYPH (Cbb3-type cytochrome oxidase assembly protein CcoS n=1 Tax=Anderseniella sp. TaxID=1872568 RepID=A0A849E7M3_9HYPH)

HSP 1 Score: 65.1 bits (157), Expect = 4.110e-13
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 MNLILLLLPVALLLGFLGLCAFFWSLKSGQYDDPEGAAQRILNDD 135
            MNL++ L+P+AL LG LGL AF WSL++GQYDD +GAA+RIL+DD
Sbjct:    1 MNLLMFLIPIALFLGCLGLAAFIWSLRNGQYDDLDGAAERILDDD 45
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig98404.31647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2A4VI94_9PROT1.500e-1475.56Cbb3-type cytochrome oxidase assembly protein CcoS... [more]
A0A2A4R1V8_9HYPH7.920e-1471.11Cbb3-type cytochrome oxidase assembly protein CcoS... [more]
A0A3B8XWS9_9HYPH9.550e-1473.33Cbb3-type cytochrome oxidase assembly protein CcoS... [more]
A0A231V0J2_9HYPH1.100e-1371.11Cytochrome oxidase maturation protein, cbb3-type n... [more]
A0A1H0UFL8_9RHOB1.180e-1364.44Cbb3-type cytochrome oxidase assembly protein CcoS... [more]
A0A6I7P5I0_9PROT1.930e-1366.67Cbb3-type cytochrome oxidase assembly protein CcoS... [more]
A0A2N3C2G6_9PROT1.980e-1371.11Cbb3-type cytochrome oxidase assembly protein CcoS... [more]
A0A2N3E5R6_9PROT3.330e-1373.33Cbb3-type cytochrome oxidase assembly protein CcoS... [more]
A0A2D8RSV0_9HYPH3.630e-1371.11Cbb3-type cytochrome oxidase assembly protein CcoS... [more]
A0A849E7M3_9HYPH4.110e-1366.67Cbb3-type cytochrome oxidase assembly protein CcoS... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig98404contigEcto-sp8_S_contig98404:231..368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score67.8
Seed ortholog evalue1.5e-09
Seed eggNOG ortholog1120956.JHZK01000009_gene1634
Preferred nameccoS
Model size138
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.Cytochrome oxidase maturation protein cbb3-type
EggNOG OGs1JPIM@119043,1NG90@1224,2UJFJ@28211,COG3197@1,COG3197@2
Cds size138
COG Functional cat.P
Best tax levelRhodobiaceae
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145351.6169727-CDS-Ecto-sp8_S_contig98404:230..3681681145351.6169727-CDS-Ecto-sp8_S_contig98404:230..368Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig98404 231..368 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig98404.31647.1prot_Ecto-sp8_S_contig98404.31647.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig98404 231..368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig98404.31647.1

>prot_Ecto-sp8_S_contig98404.31647.1 ID=prot_Ecto-sp8_S_contig98404.31647.1|Name=mRNA_Ecto-sp8_S_contig98404.31647.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=46bp
MNLILLLLPVALLLGFLGLCAFFWSLKSGQYDDPEGAAQRILNDD*
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mRNA from alignment at Ecto-sp8_S_contig98404:231..368-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig98404.31647.1 ID=mRNA_Ecto-sp8_S_contig98404.31647.1|Name=mRNA_Ecto-sp8_S_contig98404.31647.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=138bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98404:231..368- (Ectocarpus species8 EcLAC_412)
ATGAATCTAATTTTATTGTTACTACCTGTTGCATTGCTTCTTGGCTTTTT
GGGACTATGCGCGTTTTTCTGGAGTTTAAAATCCGGTCAGTATGATGACC
CGGAAGGTGCAGCACAACGCATTTTAAATGACGACTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig98404:231..368-

>mRNA_Ecto-sp8_S_contig98404.31647.1 ID=mRNA_Ecto-sp8_S_contig98404.31647.1|Name=mRNA_Ecto-sp8_S_contig98404.31647.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp8_S_contig98404:231..368- (Ectocarpus species8 EcLAC_412)
ATGAATCTAATTTTATTGTTACTACCTGTTGCATTGCTTCTTGGCTTTTT
GGGACTATGCGCGTTTTTCTGGAGTTTAAAATCCGGTCAGTATGATGACC
CGGAAGGTGCAGCACAACGCATTTTAAATGACGACTAG
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