mRNA_Ecto-sp8_S_contig9748.31493.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9748.31493.1
Unique NamemRNA_Ecto-sp8_S_contig9748.31493.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9748.31493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9748contigEcto-sp8_S_contig9748:2826..6825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1918
Hectar predicted targeting categoryother localisation
Exons5
Cds size1290
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9748.31493.1prot_Ecto-sp8_S_contig9748.31493.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9748 3082..6453 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145340.5580711-UTR-Ecto-sp8_S_contig9748:2825..30811681145340.5580711-UTR-Ecto-sp8_S_contig9748:2825..3081Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9748 2826..3081 -
1681145340.6220994-UTR-Ecto-sp8_S_contig9748:6453..68251681145340.6220994-UTR-Ecto-sp8_S_contig9748:6453..6825Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9748 6454..6825 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145340.5690842-CDS-Ecto-sp8_S_contig9748:3081..31411681145340.5690842-CDS-Ecto-sp8_S_contig9748:3081..3141Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9748 3082..3141 -
1681145340.5795085-CDS-Ecto-sp8_S_contig9748:3654..38061681145340.5795085-CDS-Ecto-sp8_S_contig9748:3654..3806Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9748 3655..3806 -
1681145340.5902228-CDS-Ecto-sp8_S_contig9748:4221..43271681145340.5902228-CDS-Ecto-sp8_S_contig9748:4221..4327Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9748 4222..4327 -
1681145340.6009035-CDS-Ecto-sp8_S_contig9748:4929..51601681145340.6009035-CDS-Ecto-sp8_S_contig9748:4929..5160Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9748 4930..5160 -
1681145340.6115801-CDS-Ecto-sp8_S_contig9748:5712..64531681145340.6115801-CDS-Ecto-sp8_S_contig9748:5712..6453Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9748 5713..6453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9748.31493.1

>prot_Ecto-sp8_S_contig9748.31493.1 ID=prot_Ecto-sp8_S_contig9748.31493.1|Name=mRNA_Ecto-sp8_S_contig9748.31493.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=430bp
MAPTGQGPPRSSGSADNADAAAARGRASLDQSSQSQPQQQQQQHEPLRSA
SPAVAGAGACLMPLPFSVPGRPLRLGGQASGRKPDTPRPVPMAAPNASPG
RAQGVAGQQQQQQQQQQQQPHRQHHHHQQQQQQHQKEQQQRRQRQQQQQQ
QQQQQQQQQRQQRREVPAEAAAHRPGTLGRPLRPAWQNGNGGGTVSAMAE
ESSGGGRGVLAPRSGRQASSPLAQQQQQQQQQQQQQQQQQQQQMRPQRPA
TGGSTGGGVGTDKGLFSSTPPRGARQDTGRPGSSRLSSAGSVSRRQVSSP
APRSPLLAARPGSLKRPSSGSATPVAKRQGLLTLSPTDCSVRAGTPTPSL
RASSPSPKLRSTHLPFTPRSSPRPGSSSRPQNNGGSGGSSSTPRRPSTPT
LGRQATSIPSSLEAAGLFLRRPYASSGPR*
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mRNA from alignment at Ecto-sp8_S_contig9748:2826..6825-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9748.31493.1 ID=mRNA_Ecto-sp8_S_contig9748.31493.1|Name=mRNA_Ecto-sp8_S_contig9748.31493.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4000bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9748:2826..6825- (Ectocarpus species8 EcLAC_412)
CAGGCGAACAAGGCCCTGCACGAACTGCGGCTTGTCCACTCGGAAGAGGT
CGGGCGACGTGAAGCGGCTGAAGCAGAGACTCATAGGTGGCGCCAGAGAG
CGGAGGCCGCAGAGGTGTTAGCCAGCGGTCACCAGGGTGCGCAGGAGAGA
AGAGTCAGTGATGACGGCAGCTCGCCCATCGGAAAGCTCAGGCAAAGGTT
CGGCTGGGCCAGGGAAGAGAAGAGACTAGCAGCGGGGACGCTGGCGAAAG
GGGGGCCTGCACCCAACAGCCGCTTCGAGGATCGATCCGCAGGTAGCGGT
ACCGGTGGGGGCGGTGGTAGCGGTCGGCGAAGACAAAACTCCCGTCAGGA
ACATACAGTCCCTGCGAGGAAGATGGCACCAACCGGCCAGGGACCTCCGC
GATCGTCCGGCTCAGCAGACAACGCCGACGCCGCGGCGGCTCGAGGCCGT
GCCTCGCTGGACCAAAGCAGTCAGTCTCAGCCGCAGCAGCAACAACAACA
ACATGAGCCTCTTCGATCCGCGTCGCCAGCGGTGGCCGGCGCCGGAGCGT
GTTTGATGCCATTGCCGTTTTCGGTGCCAGGGCGGCCTCTTCGGCTAGGC
GGCCAAGCGAGTGGTAGGAAACCGGACACGCCGAGACCAGTGCCGATGGC
CGCGCCGAACGCGTCGCCTGGGCGGGCGCAGGGTGTTGCTGGGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAACAACCCCACCGGCAACACCACCAC
CACCAGCAACAACAACAACAACACCAGAAAGAGCAACAACAACGACGACA
ACGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGC
GACAGCAACGAAGAGAGGTACCGGCTGAGGCGGCGGCACATCGGCCGGGA
ACGCTAGGCCGCCCGCTTCGACCGGCCTGGCAGAACGGCAACGGCGGTGG
CACGGTTTCGGCAATGGCGGAGGAGTCGTCCGGAGGGGGGCGGGGAGTCC
TGGCTCCTCGAAGCGGGCGACAAGCTTCCTCACCGCTAGCACAGCAGCAG
CAGCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAGCAGCA
GATGAGGCCACAGGTGTGTTGCGACAGGTGTGTTGCGACAGGTGTGTTGC
GACAGGTGTGTTGCGACAGGTGTGTTGCGACAGGTGTGTTGCGACAGGTG
TGTTGCGACAAAGGAGGAACGAGTGGTGAAGGCGGAGGTCACTGCTGGCC
GCCCAGTCGAGATTTTTGTTGCGAACTCCTTCGAGAGTGCGTTTTGTCTT
TTGGTTGGAAAAAGGTGCTTAGTTTTGTGCGTATGTTAGCGTCGACGAGT
CAGTGTTTTCGTATTGACACTTGAAAAAAAATCTCGACAGCATGGCTCTG
GCAGTGGCCGCAACCCATGTAACCAAGCGAAGCTGTTGTCTCTAACTGAA
CACAGTTTGCAGGCATGCGGCCATTATTCCTTCCCAGAGTTTCGGCCGGC
GGACTCCCAGCACTCTATCCTCGTGTCTAACCATAAACGAACACGGTTCG
TCCGATCGCACGTGATCGGCACCTATCTTTCTTTTCTCATCCCCCGACAA
CAACAACAACAACAACAACAACAACAACAACGTGCCTCCATGCTTCCGAC
TCCCTTCTCGAGAAGCGGCCCGCCACGGGGGGTTCTACTGGCGGCGGCGT
GGGCACAGACAAGGGCCTCTTCTCCAGCACGCCTCCTCGTGGCGCGCGAC
AAGACACGGGCAGGCCGGGCTCGTCGCGTCTCTCGTCGGCAGGGTCAGTG
TCGAGGCGGCAGGTGTCTAGCCCGGCGCCCCGGTCACCGTTGTTGGCTGC
ACGGCCGGGATCGTTGAAGCGGCCATCGTCGGGGAGTGCTACGCCGGTAG
GGAAGAATCAGATTTTTCTTTATACAGTAGGTGAAATTGGGTTTTGTTGA
GGGGTTGCTTCGGGATAGGGTTAGGGATAGGGTTAGGGATCCGGATATGC
ACTTCCGGGGAAGGTGTGCGTGGGGCGTTGCGCGGATAGCTGTCATGTAT
AGTTTCCGAAACAATTAGAATGTGCGCATGGATGAATCATAGCCATTATA
TGATCTAGAAACGACGTGTGTTGTTGCTGTCGTCCTCACCGAGGTTGTTG
GTCGTGTTGTACTTTGGTGCCCCCGTCACGACGGCACCTATTTACCTGCG
TTCACCGCACTCACGACTCGATAGGTCAGGGCGTCGGTGATCATGGGAAA
GCAGATTCCCTCGCACGCACGCCGACCGGCGAGGCAGAACAACACCAATC
AAGCGGACACAGCTAGCTACCGGACGATGTCCCCCTTCCTCTTTGATTGG
GCTGACGAGGAAATCAGCGCCAAAAACAACGGCGCCAAATAACCCGACAC
AATCCCCCACGTCTGCCATGCATTGACCGGTCGAACCGCCCCATAAAGCC
GTAGTTTCTGGTGACTAACCTCCTACATATCCTTGTTGTTGCCCACAGGT
GGCGAAAAGGCAAGGGCTATTAACATTGTCGCCCACGGATTGTAGTGTGC
GAGCAGGGACCCCGACGCCTTCTCTGCGCGCAAGCTCTCCGTCGCCTAAG
CTACGTGAGTCGCGCTCTTAAATCGGGGTTTTGACCTCTTGATAAGCATG
AGCTTTGTGTGGACAGATACATTATCATTCCGTGAGGCCCTTTCGTACGT
TGCTTGGCGGTGGCACGTGCTGCCTACTCTTTCTTTCCTCTTGCATCAAA
CTTTCAACATGTTGGGATAGCTGGATTCGCAGGTCCCGTTCCGCCCCCAA
TTTGGAATCTGCTGGGAACGGAAGGAGCCGACGTTGTCCAACATGCAAGA
ACCACACCTGGCACCTCGGTCTACCTGTTTTTACGTGATTCCATTGAGCC
AATGGAGTTTCTTTGTGATATTTTCACAACACAGGCGCTTGTCCGGGGCT
AACAGCCGGAAGCGCTGTTTTTCTCCGTGAATTCACTCGTCGAAACCTTA
AACCTCCCGCTCATCTCAGGCTCGACACATCTACCCTTCACGCCGCGATC
CTCTCCGAGACCCGGCTCTAGCTCGCGACCGCAAAACAACGGTGGTAGCG
GCGGCAGCAGCAGCACCCCGAGAAGACCGTCCACGCCAACCCTCGGACGG
CAAGCGACAAGCATCCCCTCGGTAAGGGAGAATACAGCCCCACCTACACG
AACGAAAGTTTTTGAGGTGTCAAAGCTTGGTGGCACCGGGCGTTTCTACA
GCGAGAGAAGAGCAAAGGCTGTCTCGTCGTACGTACGTATGTATTGATGC
GCATTCGGCCACAACACGAAGGGTAGTGCGAGGTGTGGTCGTTGGAAGAA
CTTCGTTTGGAGCCCAACCATCCGCACCGGCGTGTTCTGCACGAAAAGAC
ACAACTGATACAATAATTGCATTTTGGTCTGGTCTGGTCTGGTCTGGTCT
GGTCTGGTCTGATCCAGTCTCCATCAGCACCAACAGCACCAACGACGTAA
CAGTCCGCCTTACCACGGAGAAAAAAGCTATTCGTTTTTCGGCGTGTATT
TTTGCCCTTGTTCTTATCTCTGACGTTCAACGCATGCCCCTCCCCTCCCC
GTGGCCCTCTCTCCCCTTCCTCCCTCCTTCTCGAAACCAATCGACGTAAA
CGTCACCCGGGCATCATCCACAAATGTGAGAAAGAGTCTGGAAGCAGCTG
GGCTGTTTTTGAGACGACCCTACGCCAGTAGCGGGCCGAGATGACGACTT
GAAAGTGTAGAATACGCTTAAATATGTATCGCATTCCCACGGGGATAGCC
TGCCGCCCCGTGTGTGTTCAGAGAATTGGTTCCCGCGCACAGGTTTTGGC
GGAGCCTTTGCCGCTCCGAATCGTACACTGTTATTGTTCTTACTGTGATG
GGTTGGGGGTTTGCACATTATTTTTTTTGTGCGACTACGAACGAACGTCC
AAGTGTACGCGGATTGGGGCGTCTTCATACACATGGCGTTTGATTACAAT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9748:2826..6825-

>mRNA_Ecto-sp8_S_contig9748.31493.1 ID=mRNA_Ecto-sp8_S_contig9748.31493.1|Name=mRNA_Ecto-sp8_S_contig9748.31493.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1290bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9748:2826..6825- (Ectocarpus species8 EcLAC_412)
ATGGCACCAACCGGCCAGGGACCTCCGCGATCGTCCGGCTCAGCAGACAA
CGCCGACGCCGCGGCGGCTCGAGGCCGTGCCTCGCTGGACCAAAGCAGTC
AGTCTCAGCCGCAGCAGCAACAACAACAACATGAGCCTCTTCGATCCGCG
TCGCCAGCGGTGGCCGGCGCCGGAGCGTGTTTGATGCCATTGCCGTTTTC
GGTGCCAGGGCGGCCTCTTCGGCTAGGCGGCCAAGCGAGTGGTAGGAAAC
CGGACACGCCGAGACCAGTGCCGATGGCCGCGCCGAACGCGTCGCCTGGG
CGGGCGCAGGGTGTTGCTGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAACAACCCCACCGGCAACACCACCACCACCAGCAACAACAACAACAAC
ACCAGAAAGAGCAACAACAACGACGACAACGACAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAACAGCAGCAGCGACAGCAACGAAGAGAGGTACC
GGCTGAGGCGGCGGCACATCGGCCGGGAACGCTAGGCCGCCCGCTTCGAC
CGGCCTGGCAGAACGGCAACGGCGGTGGCACGGTTTCGGCAATGGCGGAG
GAGTCGTCCGGAGGGGGGCGGGGAGTCCTGGCTCCTCGAAGCGGGCGACA
AGCTTCCTCACCGCTAGCACAGCAGCAGCAGCAGCAGCAGCAACAGCAGC
AACAGCAGCAACAGCAGCAGCAGCAGCAGATGAGGCCACAGCGGCCCGCC
ACGGGGGGTTCTACTGGCGGCGGCGTGGGCACAGACAAGGGCCTCTTCTC
CAGCACGCCTCCTCGTGGCGCGCGACAAGACACGGGCAGGCCGGGCTCGT
CGCGTCTCTCGTCGGCAGGGTCAGTGTCGAGGCGGCAGGTGTCTAGCCCG
GCGCCCCGGTCACCGTTGTTGGCTGCACGGCCGGGATCGTTGAAGCGGCC
ATCGTCGGGGAGTGCTACGCCGGTGGCGAAAAGGCAAGGGCTATTAACAT
TGTCGCCCACGGATTGTAGTGTGCGAGCAGGGACCCCGACGCCTTCTCTG
CGCGCAAGCTCTCCGTCGCCTAAGCTACGCTCGACACATCTACCCTTCAC
GCCGCGATCCTCTCCGAGACCCGGCTCTAGCTCGCGACCGCAAAACAACG
GTGGTAGCGGCGGCAGCAGCAGCACCCCGAGAAGACCGTCCACGCCAACC
CTCGGACGGCAAGCGACAAGCATCCCCTCGAGTCTGGAAGCAGCTGGGCT
GTTTTTGAGACGACCCTACGCCAGTAGCGGGCCGAGATGA
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