mRNA_Ecto-sp8_S_contig9724.31455.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9724.31455.1
Unique NamemRNA_Ecto-sp8_S_contig9724.31455.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9724.31455.1 vs. uniprot
Match: D7FNB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNB6_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 1.400e-62
Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = 3 
Query:    3 LGDGGLPPGMRAGGHGRSSFGAGSMASVICESPSENWLATPRSGSTPILTLDGRAGSNLAQSCYYVADQDSEEDDEDEDMGERFVLEEEGWQGERWVENGGGDQSAVGQ 329
            LG+GGLPPGMRAGGHGRSSFGAGSMASVICESPSENWLATPRSGSTPILTLDGRAGSNLAQSCYYVADQDSEEDDEDEDMGERF LEEEGWQGERWVENGGGDQSAVGQ
Sbjct:  415 LGEGGLPPGMRAGGHGRSSFGAGSMASVICESPSENWLATPRSGSTPILTLDGRAGSNLAQSCYYVADQDSEEDDEDEDMGERFALEEEGWQGERWVENGGGDQSAVGQ 523
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BLAST of mRNA_Ecto-sp8_S_contig9724.31455.1 vs. uniprot
Match: A0A6H5KGC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGC5_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 3.570e-62
Identity = 106/109 (97.25%), Postives = 109/109 (100.00%), Query Frame = 3 
Query:    3 LGDGGLPPGMRAGGHGRSSFGAGSMASVICESPSENWLATPRSGSTPILTLDGRAGSNLAQSCYYVADQDSEEDDEDEDMGERFVLEEEGWQGERWVENGGGDQSAVGQ 329
            LG+GGLPPGMRAGGHGRSSFGAGSMASVICESPSENWLATPRSGSTPILTLDGRAGSNLAQSCYYVADQDSEEDDEDEDMGERFVLEEEGWQGE+WVENGGGDQSAVG+
Sbjct:  451 LGEGGLPPGMRAGGHGRSSFGAGSMASVICESPSENWLATPRSGSTPILTLDGRAGSNLAQSCYYVADQDSEEDDEDEDMGERFVLEEEGWQGEQWVENGGGDQSAVGE 559
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9724.31455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNB6_ECTSI1.400e-6298.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGC5_9PHAE3.570e-6297.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9724contigEcto-sp8_S_contig9724:13..1163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score199.1
Seed ortholog evalue9.5e-49
Seed eggNOG ortholog2880.D7FNB6
Model size331
KEGG koko:K17654
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG2432@1,KOG2432@2759
Cds size300
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145337.797268-CDS-Ecto-sp8_S_contig9724:12..2341681145337.797268-CDS-Ecto-sp8_S_contig9724:12..234Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9724 13..234 -
1681145337.8110127-CDS-Ecto-sp8_S_contig9724:1056..11341681145337.8110127-CDS-Ecto-sp8_S_contig9724:1056..1134Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9724 1057..1134 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145337.822713-UTR-Ecto-sp8_S_contig9724:1134..11631681145337.822713-UTR-Ecto-sp8_S_contig9724:1134..1163Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9724 1135..1163 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9724.31455.1prot_Ecto-sp8_S_contig9724.31455.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9724 13..1134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9724.31455.1

>prot_Ecto-sp8_S_contig9724.31455.1 ID=prot_Ecto-sp8_S_contig9724.31455.1|Name=mRNA_Ecto-sp8_S_contig9724.31455.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=100bp
MRAGGHGRSSFGAGSMASVICESPSENWLATPRSGSTPILTLDGRAGSNL
AQSCYYVADQDSEEDDEDEDMGERFVLEEEGWQGERWVENGGGDQSAVGQ
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mRNA from alignment at Ecto-sp8_S_contig9724:13..1163-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9724.31455.1 ID=mRNA_Ecto-sp8_S_contig9724.31455.1|Name=mRNA_Ecto-sp8_S_contig9724.31455.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1151bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9724:13..1163- (Ectocarpus species8 EcLAC_412)
CGCTCGGGGACGGAGGCCTGCCGCCGGGAATGCGGGCGGGAGGACACGGG
AGATCGTCTTTTGGCGCCGGTTCTATGGCTTCCGTGATTTGCGAAAGTCC
GTCCGAGGTGAGGGGAAAGTTTTGCCCTGGTTGGGGGGGATGCGTCGGCC
GAAGGGGGGAGTATTGCTTGCTGAGAGTTTGGCCAGGGAGCGGCGCTGCC
TGTTTGTGCAGTGTCGAACGTGTGGGAGGTGATTGTGGAATTCCTGGTTC
GTTTACTGGTTCAGCTGAGGGTTAGGCGAAACATTGCATGCAGCAGTCGA
CTCATTCGGTCTCTCTGACGTTTTGCAGCTCTTCTACGTTTATGGGGGGG
GGTGTAACGATGCGCTTGTCCTGCTGTGGTGTATCCGTCCGCTGGCTCTG
GACTGACGACGGTTAGTTCCTTCTACTGTCTCGAACCCACACAATGACCA
ACAGCAGTTGCTTGCTCGAGGTCGACGTGCGTTGTATTATGTATTGACGC
GACTTGCCGAGCTCCAGCGATCGACACGATCGATAGCGGGAAAGAAGTGT
GGCGCCCCTGGTTGGGGTTAAGCTTAAGCCGCAGTCGGTTCACACGGGAA
GGAATGGCTCTTGGATTGTTGCGCGAGACCCAGACCGAACAGCTGGACAC
CTTACGTTGTGCATTTGTGAACAGCAGTGCGGTGTGCAGGAAGAACCAAA
GGGCACACACTTGAAAGCTTTGCTGTTGGTCGAACACAAAGCATGCGTGT
TAGTCCTGGATAGAGTAGGTAGCACAATTACTGCCATCAGTAAGCTGTGG
AAGACTTTGACAATGCGGACTATCATTGCCCCACGGACAACAAACAGCCT
TCCAACAGGTGCGCGACTGACGGCTCACGACCCGCCGTCCCGTCCCGCTC
TCCGTACGCGTACCGTGTACCGCTAACAGAACTGGTTGGCCACACCGCGA
AGCGGAAGCACGCCTATCTTGACTCTGGACGGCAGGGCCGGGTCGAACCT
TGCGCAGAGTTGCTACTACGTTGCCGACCAGGATAGCGAAGAGGACGACG
AGGACGAAGACATGGGCGAACGCTTCGTGCTGGAGGAGGAAGGCTGGCAG
GGAGAGCGGTGGGTGGAGAACGGTGGAGGCGATCAAAGCGCCGTCGGACA
G
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9724:13..1163-

>mRNA_Ecto-sp8_S_contig9724.31455.1 ID=mRNA_Ecto-sp8_S_contig9724.31455.1|Name=mRNA_Ecto-sp8_S_contig9724.31455.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9724:13..1163- (Ectocarpus species8 EcLAC_412)
ATGCGGGCGGGAGGACACGGGAGATCGTCTTTTGGCGCCGGTTCTATGGC
TTCCGTGATTTGCGAAAGTCCGTCCGAGAACTGGTTGGCCACACCGCGAA
GCGGAAGCACGCCTATCTTGACTCTGGACGGCAGGGCCGGGTCGAACCTT
GCGCAGAGTTGCTACTACGTTGCCGACCAGGATAGCGAAGAGGACGACGA
GGACGAAGACATGGGCGAACGCTTCGTGCTGGAGGAGGAAGGCTGGCAGG
GAGAGCGGTGGGTGGAGAACGGTGGAGGCGATCAAAGCGCCGTCGGACAG
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