mRNA_Ecto-sp8_S_contig97200.31449.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig97200.31449.1 vs. uniprot
Match: A0A7X2FWH4_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium HT1-32 TaxID=2665153 RepID=A0A7X2FWH4_9PROT) HSP 1 Score: 178 bits (451), Expect = 2.170e-50 Identity = 82/113 (72.57%), Postives = 94/113 (83.19%), Query Frame = 1
Query: 1 RMNDEPIKLRPANENPWYVLATYHGEQKEGHIDDDLHAKNREVWNRWIATTLSHDDRQKLIDEERATAANMKPFSAEERRELWAGCRSPDLPTPDPATGITFSDTLFARHVSF 339
RM D+ IKLRPANENPWYVLATYHGEQ D+DLHAKNR++WNRW+A LS +DRQKLIDEERATAA +KPFSAE+RRELWA RS +LP PDPAT I F++T+FA VSF
Sbjct: 115 RMTDDQIKLRPANENPWYVLATYHGEQTGDEFDEDLHAKNRDIWNRWMAAALSDEDRQKLIDEERATAAELKPFSAEQRRELWASFRSRELPVPDPATDIDFTETVFACPVSF 227
BLAST of mRNA_Ecto-sp8_S_contig97200.31449.1 vs. uniprot
Match: A0A7Y0E2I1_9PROT (Uncharacterized protein n=1 Tax=Pacificispira spongiicola TaxID=2729598 RepID=A0A7Y0E2I1_9PROT) HSP 1 Score: 89.0 bits (219), Expect = 3.100e-18 Identity = 49/118 (41.53%), Postives = 68/118 (57.63%), Query Frame = 1
Query: 4 MNDEPIKLRPANENPWYVLATYHGEQK-EGHIDDDLHAKNREVWNRWIATTLSHDDRQKLIDEERATAANMKPFSAEERRELWAGCRSPDLPTPDPATGITFSDTLFARHVSFAPFIF 354
M D P K PANENPWY LAT HGEQ +G ++ L AKNR VWNRW+A +LS R L+ + ++ + P + +R + R +L PDP T I +S+T F + F ++F
Sbjct: 1 MTDAPPKRIPANENPWYRLATVHGEQPVDGVFNNKLAAKNRLVWNRWMAQSLSESSRFYLLQKGSLSSDEVGPLTDSDREAI--STRLMELKAPDPNTEINWSETEFPNNSLFNGYLF 116
BLAST of mRNA_Ecto-sp8_S_contig97200.31449.1 vs. uniprot
Match: A3X4S5_9RHOB (Uncharacterized protein n=1 Tax=Roseobacter sp. MED193 TaxID=314262 RepID=A3X4S5_9RHOB) HSP 1 Score: 78.6 bits (192), Expect = 1.270e-14 Identity = 49/132 (37.12%), Postives = 65/132 (49.24%), Query Frame = 1
Query: 22 KLRPANENPWYVLATYHGEQKEGHIDDDLHAKNREVWNRWIATTLSHDDRQKLIDEERATAANMKPFSAEERREL--WAGC--------------RSPDLPT----PDPATGITFSDTLFARHVSFAPFIFP 357
KL+PANENPWYVL T +GEQ+ +ID +LH NR+ WN W QKL DE AN + E REL W C R+P++ P+P IT D++F++ V F+ P
Sbjct: 14 KLKPANENPWYVLMTLYGEQEGRNIDPELHEANRKAWNAWAG--------QKLSDE---ICANSAKKAGIEERELSAWGNCGTQLRLKFCEEYSKRNPNVEKVPGLPEPNMKITCGDSVFSKTVDLRKFVIP 134
BLAST of mRNA_Ecto-sp8_S_contig97200.31449.1 vs. uniprot
Match: UPI00123737C9 (pentapeptide repeat-containing protein n=1 Tax=Bosea sp. RAC05 TaxID=1842539 RepID=UPI00123737C9) HSP 1 Score: 78.6 bits (192), Expect = 1.360e-14 Identity = 50/127 (39.37%), Postives = 64/127 (50.39%), Query Frame = 1
Query: 13 EPIK-LRPANENPWYVLATYHGEQKEGH----IDDDLHAKNREVWNRWIATTLS----------HDDR-QKLIDEERATAANMKPFSAEERR--ELWAGCR--SPDLPTPDPATGITFSDTLFARHV 333
EP + L PAN+NPWYVLAT HGEQ EG D ++HAKNR WN+W A LS H+D Q + E+ T K A +RR W P +P PDP+ + +S F R +
Sbjct: 14 EPAQALTPANQNPWYVLATLHGEQPEGATHGAFDKEIHAKNRLTWNKWAAGALSQKQRDILRERHEDSGQPVFSEQELTPYTAKEMVALKRRWRRQWTDRNPSQPVVPLPDPSQFVDYSSVHFDRPI 140
BLAST of mRNA_Ecto-sp8_S_contig97200.31449.1 vs. uniprot
Match: A0A0P1GQ98_9RHOB (Uncharacterized protein n=1 Tax=Tritonibacter multivorans TaxID=928856 RepID=A0A0P1GQ98_9RHOB) HSP 1 Score: 75.9 bits (185), Expect = 1.240e-13 Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 1
Query: 10 DEPIKLRPANENPWYVLATYHGEQKEGHIDDDLHAKNREVWNRWIATTLSHDDRQKLIDEERATAANMKPFSAEERREL 246
D P +L+PANENPWY+L T +GEQK ID +LH KNR+ WN W LS +++ K + A ++ + E R+EL
Sbjct: 13 DTPRELKPANENPWYILMTLYGEQKGHKIDWELHEKNRKAWNAWSGQFLSDEEKAKAAKSSKIDIAELEAWP-ERRKEL 90
BLAST of mRNA_Ecto-sp8_S_contig97200.31449.1 vs. uniprot
Match: UPI001CD36BC9 (pentapeptide repeat-containing protein n=1 Tax=Cognatishimia sp. MH4019 TaxID=2854030 RepID=UPI001CD36BC9) HSP 1 Score: 75.1 bits (183), Expect = 2.260e-13 Identity = 46/119 (38.66%), Postives = 63/119 (52.94%), Query Frame = 1
Query: 25 LRPANENPWYVLATYHGEQKEGHIDDDLHAKNREVWNRWIATTLSHDDRQKLIDEERATAANMKPFS--AEERRELWAGC---RSPDLPTPD-PATG--ITFSDTLFARHVSFAPFIFP 357
L+PANENPWYVL T +GEQK G +D +LH KN+ WN W TLS ++ ++ + + ++ E +L+ R+PDL P P+T I F F V F FIFP
Sbjct: 4 LKPANENPWYVLMTLYGEQK-GEVDLELHKKNQAAWNAWAGQTLSDEEAKRFAESSNIVDGQLSSWAKRGSEIEKLYERVWKERNPDLAYPGMPSTDDPIDFYKFHFTNPVLFQRFIFP 121
BLAST of mRNA_Ecto-sp8_S_contig97200.31449.1 vs. uniprot
Match: A0A2T1AK40_9RHOB (Pentapeptide repeat protein n=2 Tax=Tritonibacter scottomollicae TaxID=483013 RepID=A0A2T1AK40_9RHOB) HSP 1 Score: 74.7 bits (182), Expect = 3.120e-13 Identity = 48/129 (37.21%), Postives = 59/129 (45.74%), Query Frame = 1
Query: 1 RMNDEPIKLRPANENPWYVLATYHGEQKEGHIDDDLHAKNREVWNRWIATTLSHDDRQKLIDEERATAANMKP-----------FSAEERRELWAGCRSPDLPTPDPATGITFSDTLFARHVSFAPFIF 354
R + P LRPA+ENPWY+L T H EQK ID LH KNR WN W TLS ++R + A ++ F+AE RR PDLP I S T FA + F+F
Sbjct: 8 RPPETPEGLRPASENPWYILMTLHDEQKGELIDRVLHEKNRRAWNAWSGQTLSAEERAAAAKSSKIDVAELEAWEDLSEEIKARFAAEYRRRNPEVGTVPDLPKATRL--IDMSSTYFANTLVLDGFVF 134
BLAST of mRNA_Ecto-sp8_S_contig97200.31449.1 vs. uniprot
Match: UPI001D15DB8C (pentapeptide repeat-containing protein n=1 Tax=Methylocystis sp. WRRC1 TaxID=1732014 RepID=UPI001D15DB8C) HSP 1 Score: 73.2 bits (178), Expect = 1.060e-12 Identity = 47/129 (36.43%), Postives = 67/129 (51.94%), Query Frame = 1
Query: 7 NDEPIKLRPANENPWYVLATYHGEQKEGHIDDD-------LHAKNREVWNRWIATTLSHDDRQKLIDEERATAANMKPFSAEERRELWAGCRS----PDLPTPDPATG-ITFSDTLFARHVSFAPFIFP 357
+D L PANENPWY+LAT +GEQ+E + D + NR+ WNRW+AT ++ + L+ ++KPF++EE E A D+ P+P+ + FS F R V F FIFP
Sbjct: 3 DDAKPNLTPANENPWYLLATLYGEQEE--VRDSKWLLLVPIGEANRKAWNRWMATAFQSEELETLLPLAHIKG-DLKPFTSEETDEFRAAFAKRAGRQDIEPPNPSKEFMDFSRCQFDRPVFFRGFIFP 128
BLAST of mRNA_Ecto-sp8_S_contig97200.31449.1 vs. uniprot
Match: Q1GIY3_RUEST (Uncharacterized protein n=2 Tax=Ruegeria sp. (strain TM1040) TaxID=292414 RepID=Q1GIY3_RUEST) HSP 1 Score: 72.4 bits (176), Expect = 1.860e-12 Identity = 44/122 (36.07%), Postives = 62/122 (50.82%), Query Frame = 1
Query: 16 PIKLRPANENPWYVLATYHGEQKEGHIDDDLHAKNREVWNRWIATTLSHDDRQKLIDEERATAANMKPFSAEERRELW----------AGCRSPD----LPTPDPATGITFSDTLFARHVSF 339
P LRPANENPWY+L T +GEQ+ ID +LH KNR WN W+ LS ++R A ++ +K E EL + R+ D L P+PA I +T+F+ ++ F
Sbjct: 8 PEGLRPANENPWYILMTLYGEQEGEEIDVELHKKNRRAWNAWVGQALSAEERVAA-----AKSSQIKVTELEAWDELGEKIKARFFEESNRRNVDTEGMLVFPEPAKPIWMGNTVFSENLVF 124
BLAST of mRNA_Ecto-sp8_S_contig97200.31449.1 vs. uniprot
Match: UPI000483E94F (pentapeptide repeat-containing protein n=1 Tax=Leisingera aquimarina TaxID=476529 RepID=UPI000483E94F) HSP 1 Score: 68.2 bits (165), Expect = 1.080e-11 Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 1
Query: 22 KLRPANENPWYVLATYHGEQKEGHIDDDLHAKNREVWNRW 141
+L+PANENPWYVL T +GEQK ID DLH KNR+VWN W
Sbjct: 16 ELKPANENPWYVLMTLYGEQKGDEIDWDLHEKNRQVWNAW 55 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97200.31449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig97200.31449.1 >prot_Ecto-sp8_S_contig97200.31449.1 ID=prot_Ecto-sp8_S_contig97200.31449.1|Name=mRNA_Ecto-sp8_S_contig97200.31449.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=118bp MNDEPIKLRPANENPWYVLATYHGEQKEGHIDDDLHAKNREVWNRWIATTback to top mRNA from alignment at Ecto-sp8_S_contig97200:215..571+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig97200.31449.1 ID=mRNA_Ecto-sp8_S_contig97200.31449.1|Name=mRNA_Ecto-sp8_S_contig97200.31449.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=357bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97200:215..571+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97200:215..571+ >mRNA_Ecto-sp8_S_contig97200.31449.1 ID=mRNA_Ecto-sp8_S_contig97200.31449.1|Name=mRNA_Ecto-sp8_S_contig97200.31449.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97200:215..571+ (Ectocarpus species8 EcLAC_412)back to top |