mRNA_Ecto-sp8_S_contig968.31384.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig968.31384.1
Unique NamemRNA_Ecto-sp8_S_contig968.31384.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig968.31384.1 vs. uniprot
Match: D8LMB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB7_ECTSI)

HSP 1 Score: 570 bits (1468), Expect = 3.930e-186
Identity = 350/368 (95.11%), Postives = 355/368 (96.47%), Query Frame = 1 
Query:    1 VRKRGERRRAKRIAALEARRRGTIKIQKCARGFIGRRKVLVVREKLLHQHXXXXXXXXXXXXXXXXXAGEARRDMELTRAAQNKAAIHIQTAQRRKAALAAAETRRTIQALQRRKSAEIAAISIQRVVRGQAARTATGAEVEKRKGDEDQDGFASSVVAGPEAGAENDGVGVPISASTSLPEQVQTSALPQEDESKAQDGTAAQLHEAESSPSATADLQQPPAVAALSPGENAARAQAACRIQAIGRGRAARTVAQERRQKRIEEQFHRASVWGQRVDGVQGTTANQRASEKLPTPKSSPQAPLRSSSLFSSGTGAASRDVTESLGKQKGQPEAATLIQAAFRGGKARWEADRLRDDFKTRKIEEDAR 1104
            VRKRGERRRAKRIAALEARRRGTIKIQKCARGFIGRRKVLVVREKLLHQHXXXXXXXXXXXXXXXXXAGEA+RDMELT AAQNKAAIHIQTAQRRKAA+AAAETRRTIQALQRRKSAEIAAISIQRVVRGQAARTATGAEVEKRKGDEDQDGFASS VAGP AGAENDGVG PISASTSLPEQVQTS+LPQEDESKAQD TAAQ HEAESSPS TADLQQPPAVAALSPGE AARAQAACRIQAIGRGRAARTVAQERRQKRIEEQFHRASVWGQ+VDG Q TTANQRASEKLPTPKSSPQAPLRSSSLFSSGTGAASRDVTESLGKQKGQPEAATLIQAAFRGGKARW ADRLRDD+KTRK E DAR
Sbjct:  609 VRKRGERRRAKRIAALEARRRGTIKIQKCARGFIGRRKVLVVREKLLHQHXXXXXXXXXXXXXXXXXAGEAKRDMELTWAAQNKAAIHIQTAQRRKAAIAAAETRRTIQALQRRKSAEIAAISIQRVVRGQAARTATGAEVEKRKGDEDQDGFASSGVAGPGAGAENDGVGAPISASTSLPEQVQTSSLPQEDESKAQDATAAQQHEAESSPSVTADLQQPPAVAALSPGEKAARAQAACRIQAIGRGRAARTVAQERRQKRIEEQFHRASVWGQQVDGGQDTTANQRASEKLPTPKSSPQAPLRSSSLFSSGTGAASRDVTESLGKQKGQPEAATLIQAAFRGGKARWGADRLRDDYKTRKDEADAR 976
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BLAST of mRNA_Ecto-sp8_S_contig968.31384.1 vs. uniprot
Match: A0A6H5K374_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K374_9PHAE)

HSP 1 Score: 467 bits (1202), Expect = 4.570e-152
Identity = 329/494 (66.60%), Postives = 340/494 (68.83%), Query Frame = 1 
Query:    1 VRKRGERRRAKRIAALEARRRGTIKIQKCARGFIGRRKVLVVREKLLHQHXXXXXXXXXXXXXXXXXAGEARRDMELTR-------------------------------AAQNKAAIHIQTAQRRKAALAAAETRRTIQALQRRKSAEIAAISIQRVVRGQAARTATGAEVEKRK-------------------------------------------------GDEDQDGFASSVVAGPEAGAENDGVGVPISASTSLPEQVQTSALPQEDESKAQDGTAAQLHEAESSPSATADLQQPPAVAALSPGENAARAQAACRIQ--------------------------------------AIGRGRAARTVAQERRQKRIEEQFHRASVWGQRVDGVQGTTANQRASEKLPTPKSSPQAPLRSSSLFSSGTGAASRDVTESLGKQKGQPEAATLIQAAFRGGKARWEADRLRDDFKTRKIEEDARAREKVQRK 1128
            VR+RGE RR+ RIAALE RRRG IKIQKCARGFIGRRKVLVVREKLLHQH XXXXXXXXXXXXXXXXAGEARRDMELTR                               AA+NKAAI IQTAQRR+AA+AAAETRRTIQALQRRKSAEIAAI IQRVVRGQAAR ATGAEV KRK                                                 GDEDQDGFASSVVAGPEA A+N GVG PISAST L E +QTSALPQED+S AQD TA   HE ESSPSATA LQQPP VAALS GE AARAQAACRIQ                                      AIGRGRAARTVAQERRQKRIEEQFHRASVWGQRVDG Q TT+N RASEK PTPKSSPQAP RSSSLF SGTGAASRD TESLGKQKG+P+AAT IQAAFRGGKARWEADRLR D KTRKIE DARAREKVQRK
Sbjct:  571 VRRRGEIRRSNRIAALETRRRGAIKIQKCARGFIGRRKVLVVREKLLHQHGXXXXXXXXXXXXXXXXAGEARRDMELTRVRMRCAQRSNVIRLVSAQTIFRHANGTDDVFAARNKAAIRIQTAQRRQAAMAAAETRRTIQALQRRKSAEIAAIFIQRVVRGQAARAATGAEVAKRKERQRAXXXXXXXXXXXXXXXXERTACVGIFHDIIIPPPPLASLQSRSNQGDEDQDGFASSVVAGPEAVADNGGVGAPISASTLLQEPIQTSALPQEDKSNAQDATAVPQHETESSPSATAHLQQPPDVAALSHGEKAARAQAACRIQVIIATRTMHQKRLTAKEQKERAVIGSWRGSIIRTDGGRAIGRGRAARTVAQERRQKRIEEQFHRASVWGQRVDGGQDTTSNHRASEKRPTPKSSPQAPRRSSSLFPSGTGAASRDTTESLGKQKGRPQAATRIQAAFRGGKARWEADRLRHDVKTRKIESDARAREKVQRK 1064
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig968.31384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMB7_ECTSI3.930e-18695.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K374_9PHAE4.570e-15266.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig968contigEcto-sp8_S_contig968:14703..17657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score578.2
Seed ortholog evalue2.9e-162
Seed eggNOG ortholog2880.D8LMB7
Preferred nameWAC
Model size1134
KEGG koko:K16743,ko:K19613
KEGG Pathwayko04014,map04014
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000323,GO:0000993,GO:0001098,GO:0001099,GO:0003008,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0005764,GO:0005773,GO:0006325,GO:0006355,GO:0006464,GO:0006513,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007610,GO:0007611,GO:0007612,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010390,GO:0010468,GO:0010506,GO:0010507,GO:0010508,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010647,GO:0016043,GO:0016239,GO:0016241,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023051,GO:0023056,GO:0030162,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031331,GO:0031570,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032446,GO:0032501,GO:0032991,GO:0033523,GO:0033554,GO:0036211,GO:0042176,GO:0042177,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044783,GO:0044877,GO:0045786,GO:0045861,GO:0045893,GO:0045935,GO:0046958,GO:0046959,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0061136,GO:0065007,GO:0070013,GO:0070063,GO:0070647,GO:0071704,GO:0071840,GO:0071894,GO:0080090,GO:1901564,GO:1901799,GO:1902531,GO:1902533,GO:1902680,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903432,GO:1903506,GO:1903508,GO:1904263,GO:1990904,GO:2000058,GO:2000059,GO:2000112,GO:2001141
Exons5
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsCOG5104@1,KOG0152@2759
Cds size1134
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145332.7340713-CDS-Ecto-sp8_S_contig968:14702..147771681145332.7340713-CDS-Ecto-sp8_S_contig968:14702..14777Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig968 14703..14777 +
1681145332.7461598-CDS-Ecto-sp8_S_contig968:15061..152231681145332.7461598-CDS-Ecto-sp8_S_contig968:15061..15223Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig968 15062..15223 +
1681145332.756002-CDS-Ecto-sp8_S_contig968:15687..158851681145332.756002-CDS-Ecto-sp8_S_contig968:15687..15885Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig968 15688..15885 +
1681145332.7660806-CDS-Ecto-sp8_S_contig968:16588..168821681145332.7660806-CDS-Ecto-sp8_S_contig968:16588..16882Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig968 16589..16882 +
1681145332.7812898-CDS-Ecto-sp8_S_contig968:17252..176571681145332.7812898-CDS-Ecto-sp8_S_contig968:17252..17657Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig968 17253..17657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig968.31384.1prot_Ecto-sp8_S_contig968.31384.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig968 14703..17657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig968.31384.1

>prot_Ecto-sp8_S_contig968.31384.1 ID=prot_Ecto-sp8_S_contig968.31384.1|Name=mRNA_Ecto-sp8_S_contig968.31384.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=378bp
VRKRGERRRAKRIAALEARRRGTIKIQKCARGFIGRRKVLVVREKLLHQH
GSIIIQTTWRGMLGRRKAGEARRDMELTRAAQNKAAIHIQTAQRRKAALA
AAETRRTIQALQRRKSAEIAAISIQRVVRGQAARTATGAEVEKRKGDEDQ
DGFASSVVAGPEAGAENDGVGVPISASTSLPEQVQTSALPQEDESKAQDG
TAAQLHEAESSPSATADLQQPPAVAALSPGENAARAQAACRIQAIGRGRA
ARTVAQERRQKRIEEQFHRASVWGQRVDGVQGTTANQRASEKLPTPKSSP
QAPLRSSSLFSSGTGAASRDVTESLGKQKGQPEAATLIQAAFRGGKARWE
ADRLRDDFKTRKIEEDARAREKVQRKF*
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mRNA from alignment at Ecto-sp8_S_contig968:14703..17657+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig968.31384.1 ID=mRNA_Ecto-sp8_S_contig968.31384.1|Name=mRNA_Ecto-sp8_S_contig968.31384.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2955bp|location=Sequence derived from alignment at Ecto-sp8_S_contig968:14703..17657+ (Ectocarpus species8 EcLAC_412)
GTTAGGAAGCGAGGGGAGAGACGCAGAGCCAAAAGGATTGCCGCACTGGA
GGCGCGCCGGCGCGGAACGATCAAGGTATAGTGCCCATATGACGTGGTAT
GCCTTCGCGGCATACTTCAACTTTCAGTGAACAAAAGGCGCAGCTGTGAT
GGATTCCATGCTGTAGATTGTGGTGACGGTTCTCCTGCTGCAAACTAGCC
GTGTTCGTTATCGTAGCATGTCTTGGTGCATACCCCGCAAAGAGGAACGC
ACCATGGTTCTTTCTGCTCGCTGTGTGACCCTTTCTCCCCGACGCTCTAC
ATCAATCTCTTTCGCCGCCCCCCTCCACACGAAACCACCAATGGTTCGTG
TCTCAACAGATCCAAAAATGCGCGAGGGGCTTCATCGGCCGTCGGAAGGT
GTTGGTTGTCCGGGAAAAGCTTCTACATCAACACGGATCCATTATCATTC
AGACCACCTGGAGGGGCATGTTGGGCAGGCGAAAGGCTGGAGAAGCGAGG
AGGGACATGGAGCTTACGCGGGTGCGTGTGCGCTGCGCTCAGAGGAGCAA
CATGGATAGATTTGTCTCTACCCAAATTATTTTCACGATTTGGCACGCGA
ACGGAACAGACGATATCTCCGTAGGCAGAATGACGTCTCCCAAAATGCAC
GCTAACCAGGGCCCTTCGATCTCCGTTGACTTGAAAACGTCTCCCCAGCG
TGTGCTGCGGGATTAAGGCGGCCTCTTATTTGCGCCAGCTACGAGTGCAG
ACGAGGACGGACGCACCCCTGCCCTTTCCTCTCTCGCCCTATTGCCCACG
GAAAGCACCACCAGCATCAAGACGCATTCAGCCCGTACACGGTCTAAACA
AAGCACATGCATAGACAACCAGTTTCGTTCGCTAACGAATGCGCGAATGC
CCGAAACCAGTATACGCAATGCCCACAACGACGGCCGGTTCCAAATTATG
CAACCCGCGCGTGCGGCACACTCATACCCCCTCAGGCTGCACAGAATAAG
GCGGCGATTCACATCCAGACCGCGCAGCGCCGGAAGGCTGCGCTAGCCGC
AGCAGAGACGAGGAGGACAATCCAAGCGCTACAGCGCCGTAAGTCAGCGG
AGATTGCCGCTATCTCCATCCAGAGAGTAGTGAGGGGGCAGGCAGCGCGA
ACGGCGACGGGGGCTGAAGTCGAAAAGAGAAAGGTGAGCAGCTTAGTCGG
CGTCGCCCAAACCCGCCTGGCTCCTCTTCAGCACTCGAAGCAACACCTGT
CAAGTACCTGTATAAAAAAGGTTAGAACGGCGAATGCTCGGAAGGGAAGG
GGCACCTCTATCCTTATTTGCTATCGCCACCTACAGTTGCAAATTTCTTG
AGGACAAATACGTTCCTGGTTGTCTCGCGGTTGAGAATCGATTCTTGCCC
GCGTGAGGGCATTTCAGGGTCTCAATGCCCCACGACCCGGACCAGCGCCT
TCCGATTCACGTAACTGATCAGATATGCTTCGTGGTATTGCGTGTGTATG
TTCTAACCACGGTACCGCACATATGTCACACATTTTGAAACCTGACCTTT
CATCGCCGAGGTTTTCGAGAGCCGGCTATCACCCAAATCTATTCAAACCA
TTACAGCGAAATATATGAAAACGACGGTACCGAGCGAACCACTTCCAAGT
GCCTAACCCTAGCCCAATACATCCGCCGTATCCCTTTGTCCTTTTCTGAC
CATGTCCTATTTCACACTCGATACCCGCGTCCTTGTTAGGAGCGGCAGCG
AGCCGCAGCAGCGGTACATATCCAGCGAATCGCGAGAGGCCGCGCAGCGC
GGGAGCGTGCCGCTTGCGTCGGCATCTCCCACGACTTTATCATTCCTCCA
CCCCCATTGGCCTCGCCGCAAAGCCGGTCGATTCAGGGCGACGAGGACCA
AGATGGCTTCGCTTCTTCAGTGGTTGCTGGCCCTGAAGCTGGTGCCGAGA
ACGATGGCGTGGGGGTGCCTATTTCAGCGTCGACGTCGTTGCCAGAACAG
GTCCAAACCTCGGCTCTGCCACAGGAAGACGAGAGTAAAGCTCAGGACGG
AACAGCCGCGCAACTACACGAGGCAGAGAGTTCACCGTCGGCGACCGCTG
ATCTGCAGCAACCCCCTGCTGTTGCGGCCCTGTCCCCCGGCGAAAACGCA
GCCCGGGCGCAAGCTGCGTGCAGGATTCAGGTGATCATCGCCACCCGAAC
CATGCACCAAATACGTCTGACAGCAAAAAAGTAGAAGGAGCGGGCGACTA
TTGGCTCATGGCGTGGTTCCATTGTCCGAACAACCGACGACGGCAGGGTG
TCACGATAACGTCATGTTGGCGTCGAATCTCGTTGCGAGATCAATCGAGG
AGCGCCTACAGTAGATGAATTGCATCCGCCCGCCGGGAAAATGCTCAATC
TTCATGAAATGTCGACAAGAGAAGAAAGAAAGCTTGGTTTCCGAAGAGCG
TCGAGCCTGTGAAATATCTGTAGCGATCATTGACATCCTCAAGGTTGTTC
TTTCCAAGGGTTTCACAGCAGGATCCCCTTTTCCGAACCTACACTCGCAG
GCAATTGGCCGAGGGAGGGCCGCGAGGACTGTGGCCCAGGAGCGCAGGCA
GAAACGAATCGAAGAGCAATTCCACCGGGCGAGCGTTTGGGGGCAACGAG
TAGACGGAGTGCAAGGCACTACAGCAAACCAACGAGCATCCGAGAAACTT
CCCACCCCCAAGTCGTCACCGCAAGCTCCACTGCGGTCGTCATCGCTCTT
CTCATCGGGGACTGGGGCAGCAAGTCGCGATGTGACGGAATCATTGGGTA
AACAAAAGGGTCAGCCCGAAGCTGCGACTCTGATTCAGGCAGCGTTCAGG
GGGGGAAAGGCGAGGTGGGAGGCGGATCGGCTTCGGGACGACTTCAAGAC
CAGAAAGATCGAGGAAGACGCGCGAGCGCGAGAGAAGGTGCAGCGGAAGT
TTTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig968:14703..17657+

>mRNA_Ecto-sp8_S_contig968.31384.1 ID=mRNA_Ecto-sp8_S_contig968.31384.1|Name=mRNA_Ecto-sp8_S_contig968.31384.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1134bp|location=Sequence derived from alignment at Ecto-sp8_S_contig968:14703..17657+ (Ectocarpus species8 EcLAC_412)
GTTAGGAAGCGAGGGGAGAGACGCAGAGCCAAAAGGATTGCCGCACTGGA
GGCGCGCCGGCGCGGAACGATCAAGATCCAAAAATGCGCGAGGGGCTTCA
TCGGCCGTCGGAAGGTGTTGGTTGTCCGGGAAAAGCTTCTACATCAACAC
GGATCCATTATCATTCAGACCACCTGGAGGGGCATGTTGGGCAGGCGAAA
GGCTGGAGAAGCGAGGAGGGACATGGAGCTTACGCGGGCTGCACAGAATA
AGGCGGCGATTCACATCCAGACCGCGCAGCGCCGGAAGGCTGCGCTAGCC
GCAGCAGAGACGAGGAGGACAATCCAAGCGCTACAGCGCCGTAAGTCAGC
GGAGATTGCCGCTATCTCCATCCAGAGAGTAGTGAGGGGGCAGGCAGCGC
GAACGGCGACGGGGGCTGAAGTCGAAAAGAGAAAGGGCGACGAGGACCAA
GATGGCTTCGCTTCTTCAGTGGTTGCTGGCCCTGAAGCTGGTGCCGAGAA
CGATGGCGTGGGGGTGCCTATTTCAGCGTCGACGTCGTTGCCAGAACAGG
TCCAAACCTCGGCTCTGCCACAGGAAGACGAGAGTAAAGCTCAGGACGGA
ACAGCCGCGCAACTACACGAGGCAGAGAGTTCACCGTCGGCGACCGCTGA
TCTGCAGCAACCCCCTGCTGTTGCGGCCCTGTCCCCCGGCGAAAACGCAG
CCCGGGCGCAAGCTGCGTGCAGGATTCAGGCAATTGGCCGAGGGAGGGCC
GCGAGGACTGTGGCCCAGGAGCGCAGGCAGAAACGAATCGAAGAGCAATT
CCACCGGGCGAGCGTTTGGGGGCAACGAGTAGACGGAGTGCAAGGCACTA
CAGCAAACCAACGAGCATCCGAGAAACTTCCCACCCCCAAGTCGTCACCG
CAAGCTCCACTGCGGTCGTCATCGCTCTTCTCATCGGGGACTGGGGCAGC
AAGTCGCGATGTGACGGAATCATTGGGTAAACAAAAGGGTCAGCCCGAAG
CTGCGACTCTGATTCAGGCAGCGTTCAGGGGGGGAAAGGCGAGGTGGGAG
GCGGATCGGCTTCGGGACGACTTCAAGACCAGAAAGATCGAGGAAGACGC
GCGAGCGCGAGAGAAGGTGCAGCGGAAGTTTTAG
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