mRNA_Ecto-sp8_S_contig9620.31292.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig9620.31292.1 vs. uniprot
Match: D7FQP2_ECTSI (Pc16g06120 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP2_ECTSI) HSP 1 Score: 123 bits (309), Expect = 1.290e-28 Identity = 85/151 (56.29%), Postives = 92/151 (60.93%), Query Frame = 2
Query: 239 VVTALIRAGAGQDIEAKS--LGGTPLLVAVATGKEAAARVLMLAGAGVNAVSRNNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--AARVGRHDVGHALAHKGADLDALNVNCMITPISLAVEGDHVSTVKVLLAAGADAK 679
VVTALIRAGAG+D+EAK+ GGTPL VAV G+EAAARVL+LAGA VNAV N + AA GRHDV HALAH ADLDAL+ M TPISLAVEGDHVSTVKVLLAAGADAK
Sbjct: 89 VVTALIRAGAGEDMEAKTPGTGGTPLHVAVMRGQEAAARVLVLAGADVNAVDHNTDTPLHLAIGVLGVDARIAQDLLLSGANPKARGFAHDCPIHVAASHGRHDVVHALAHTRADLDALDGKGM-TPISLAVEGDHVSTVKVLLAAGADAK 238
BLAST of mRNA_Ecto-sp8_S_contig9620.31292.1 vs. uniprot
Match: D7FQP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP1_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 9.570e-15 Identity = 46/89 (51.69%), Postives = 49/89 (55.06%), Query Frame = 1
Query: 1 MPVPREDAEDRAKILGDAADMIFKLMCDRATSQQWAEWLRAPLQARPTKTW*RS**KLEQT*VQAGGVVVAALCYMRLGGGDGSHQGWR 267
MP PREDAEDRAK LGDAA +IFKLMCDRATS+QWAEWLRAPL+ A G L L G GWR
Sbjct: 1 MPAPREDAEDRAKTLGDAAGIIFKLMCDRATSEQWAEWLRAPLE-------------------HAAGTANQDLVEKLLKAGADGSAGWR 70
BLAST of mRNA_Ecto-sp8_S_contig9620.31292.1 vs. uniprot
Match: D7G2A3_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A3_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 2.480e-14 Identity = 101/176 (57.39%), Postives = 118/176 (67.05%), Query Frame = 2
Query: 152 GEEVDESWSRRECRQVVLWWQHSATCG*EVVTALIRAGAGQDIEAKSL--GGTPLLVAVATGKEAAARVLMLAGAGVNAVSRNNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARVGRHDVGHALAHKGADLDALNVNCMITPISLAVEGDHVSTVKVLLAAGAD 673
G V W R C L + V+T+L RAGAG+D++AKSL G TPL +AV GKEAAA+ L++AGA VN + N+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A G +V AL KG DL+ LN TP+ LAV GDHV+TVKVLL+ GAD
Sbjct: 58 GANVGAGW--RGCHGKTLLHAAAEGGNVHVITSLRRAGAGRDMKAKSLDTGHTPLDLAVIGGKEAAAKALIMAGADVNTLDATNDGLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWHGLDEVVLALGEKGVDLNCLNSKGE-TPLRLAVRGDHVTTVKVLLSEGAD 230
BLAST of mRNA_Ecto-sp8_S_contig9620.31292.1 vs. uniprot
Match: A0A6H5JXY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY4_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 1.320e-13 Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 1
Query: 1 MPVPR--EDAEDRAKILGDAADMIFKLMCDRATSQQWAEWLRAPLQ 132
MP PR +DAEDRAKILGDAADMIF+LMCDRATS+QWAEWLRAPL+
Sbjct: 1 MPWPRREDDAEDRAKILGDAADMIFELMCDRATSEQWAEWLRAPLE 46
BLAST of mRNA_Ecto-sp8_S_contig9620.31292.1 vs. uniprot
Match: A0A6H5JYJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ2_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 6.650e-7 Identity = 52/143 (36.36%), Postives = 68/143 (47.55%), Query Frame = 2
Query: 251 LIRAGAGQDIEAKSL--GGTPLLVAVATGKEAAARVLMLAGAGVNAVSRNNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARVGRHDVGHALAHKGADLDALNVNCMITPISLAVEGDHVSTVKVLLAAGAD 673
L RAGAG D++AK+L G TPL +AV G EAAA L++AGA +N + N+ A G +V L K DL+ +N+ TP+ +AV +HVSTVKVLLA GAD
Sbjct: 45 LRRAGAGGDMKAKTLDTGHTPLDLAVVGGNEAAAEALIMAGADMNVLDVKNDGLLHLTITGGHAGSNGNFPIHLP----------------ACYGFDEVALVLVQKRVDLNCVNIERR-TPLYVAVRENHVSTVKVLLAEGAD 170
BLAST of mRNA_Ecto-sp8_S_contig9620.31292.1 vs. uniprot
Match: A0A6H5KB54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB54_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 7.730e-6 Identity = 95/181 (52.49%), Postives = 112/181 (61.88%), Query Frame = 2
Query: 146 RLGEEVDESWSRRECRQVVLWWQHSATCG*E--VVTALIRAGAGQDIEAKS--LGGTPLLVAVATGKEAAARVLMLAGAGVNAVSRNNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARVGRHDVGHALAHKGADLDALNVNCMITPISLAVEGDHVSTVKVLLAAGADA 676
R G + W R C L H+A G + VV+ L RAGA D EA++ G TPL +AV G A A+ L +A A VN + N XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D+ ALAHKG DL+ + P+ AV DH+STV+VLLA GA+A
Sbjct: 32 RAGADGGVGW--RGCHDKTLL--HAAAKGGDALVVSLLQRAGARADFEAEAPGTGHTPLHLAVLGGNAATAKALTMAEADVNVLDAMNGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDIVVALAHKGVDLEGVAE----PPLLRAVRQDHISTVRVLLAVGANA 204
BLAST of mRNA_Ecto-sp8_S_contig9620.31292.1 vs. uniprot
Match: D7FPN3_ECTSI (Similar to ankyrin 2,3/unc44, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPN3_ECTSI) HSP 1 Score: 57.0 bits (136), Expect = 2.990e-5 Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1
Query: 25 EDRAKILGDAADMIFKLMCDRATSQQWAEWLRAPLQ 132
EDRA IL + D F+L+CDRAT +QWAEWLRAPL+
Sbjct: 8 EDRANILRGSEDTTFRLVCDRATPEQWAEWLRAPLE 43 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9620.31292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig9620.31292.1 >prot_Ecto-sp8_S_contig9620.31292.1 ID=prot_Ecto-sp8_S_contig9620.31292.1|Name=mRNA_Ecto-sp8_S_contig9620.31292.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=273bp MLAGAGVNAVSRNNNTPLHLAIGKDHVRLAKDLLLSGANPKARGFARDCPback to top mRNA from alignment at Ecto-sp8_S_contig9620:2444..3772- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig9620.31292.1 ID=mRNA_Ecto-sp8_S_contig9620.31292.1|Name=mRNA_Ecto-sp8_S_contig9620.31292.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1329bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9620:2444..3772- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9620:2444..3772- >mRNA_Ecto-sp8_S_contig9620.31292.1 ID=mRNA_Ecto-sp8_S_contig9620.31292.1|Name=mRNA_Ecto-sp8_S_contig9620.31292.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=819bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9620:2444..3772- (Ectocarpus species8 EcLAC_412)back to top |