mRNA_Ecto-sp8_S_contig9352.30820.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9352.30820.1
Unique NamemRNA_Ecto-sp8_S_contig9352.30820.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9352.30820.1 vs. uniprot
Match: D7FUQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUQ6_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 5.370e-12
Identity = 42/51 (82.35%), Postives = 42/51 (82.35%), Query Frame = -2 
Query:    3 GRSSSIADETAGLSSAANDLAREVDELLRASGSGAXXXXXXXXXMATGDAS 155
            GRSSSIADETAGLSSAANDLAREVDELLRASGSGA         MATGDAS
Sbjct: 1652 GRSSSIADETAGLSSAANDLAREVDELLRASGSGARGDSSGASGMATGDAS 1702
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BLAST of mRNA_Ecto-sp8_S_contig9352.30820.1 vs. uniprot
Match: A0A6H5JRR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRR9_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.970e-9
Identity = 36/51 (70.59%), Postives = 39/51 (76.47%), Query Frame = -2 
Query:    3 GRSSSIADETAGLSSAANDLAREVDELLRASGSGAXXXXXXXXXMATGDAS 155
            GRS +IADETAG+SSAANDLARE+DELLRASGSGA         M TGD S
Sbjct: 1795 GRSRNIADETAGMSSAANDLAREIDELLRASGSGARGDSSGASGMVTGDVS 1845
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9352.30820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUQ6_ECTSI5.370e-1282.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRR9_9PHAE1.970e-970.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9352contigEcto-sp8_S_contig9352:3466..3822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size357
Hectar predicted targeting categorymitochondrion
Exons1
Cds size336
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145290.4037676-UTR-Ecto-sp8_S_contig9352:3465..34861681145290.4037676-UTR-Ecto-sp8_S_contig9352:3465..3486Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9352 3466..3486 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145290.4162097-CDS-Ecto-sp8_S_contig9352:3486..38221681145290.4162097-CDS-Ecto-sp8_S_contig9352:3486..3822Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9352 3487..3822 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9352.30820.1prot_Ecto-sp8_S_contig9352.30820.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9352 3487..3822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9352.30820.1

>prot_Ecto-sp8_S_contig9352.30820.1 ID=prot_Ecto-sp8_S_contig9352.30820.1|Name=mRNA_Ecto-sp8_S_contig9352.30820.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=112bp
MPLAPLLFPRAPLPLARRSSSTSLARSLAALDNPAVSSAMLLLRPAAAAP
AVAPALPPDEELTRRDDGPEVEKPPPPPSPPPVLPPSSRLPPTLYRRDDD
DDDEHGDRTRIS
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mRNA from alignment at Ecto-sp8_S_contig9352:3466..3822+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9352.30820.1 ID=mRNA_Ecto-sp8_S_contig9352.30820.1|Name=mRNA_Ecto-sp8_S_contig9352.30820.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=357bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9352:3466..3822+ (Ectocarpus species8 EcLAC_412)
CCGGAGGCGTCGCCCGTTGCCATGCCGCTAGCACCGCTGCTGTTTCCACG
TGCCCCGCTACCGCTTGCCCGCAGGAGCTCGTCGACCTCCCTGGCGAGGT
CGTTGGCAGCGCTAGACAATCCGGCGGTCTCGTCCGCGATGCTGCTGCTA
CGGCCGGCAGCAGCAGCACCAGCAGTGGCCCCGGCACTTCCTCCCGATGA
AGAGCTCACGAGAAGAGACGACGGCCCAGAGGTCGAGAAACCGCCGCCGC
CGCCGTCGCCGCCGCCGGTGCTGCCGCCGTCTTCCCGACTGCCGCCAACG
CTATACCGTAGAGACGACGATGACGACGACGAGCACGGGGATCGAACACG
CATCAGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9352:3466..3822+

>mRNA_Ecto-sp8_S_contig9352.30820.1 ID=mRNA_Ecto-sp8_S_contig9352.30820.1|Name=mRNA_Ecto-sp8_S_contig9352.30820.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9352:3466..3822+ (Ectocarpus species8 EcLAC_412)
ATGCCGCTAGCACCGCTGCTGTTTCCACGTGCCCCGCTACCGCTTGCCCG
CAGGAGCTCGTCGACCTCCCTGGCGAGGTCGTTGGCAGCGCTAGACAATC
CGGCGGTCTCGTCCGCGATGCTGCTGCTACGGCCGGCAGCAGCAGCACCA
GCAGTGGCCCCGGCACTTCCTCCCGATGAAGAGCTCACGAGAAGAGACGA
CGGCCCAGAGGTCGAGAAACCGCCGCCGCCGCCGTCGCCGCCGCCGGTGC
TGCCGCCGTCTTCCCGACTGCCGCCAACGCTATACCGTAGAGACGACGAT
GACGACGACGAGCACGGGGATCGAACACGCATCAGC
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