mRNA_Ecto-sp8_S_contig934.30801.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig934.30801.1
Unique NamemRNA_Ecto-sp8_S_contig934.30801.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig934.30801.1 vs. uniprot
Match: A0A6H5JSE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSE9_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 2.420e-42
Identity = 109/179 (60.89%), Postives = 111/179 (62.01%), Query Frame = 1 
Query:  124 GTTAPGTEMEIDDPPAATPAQSKKRRRGDGPEEDPSAGAVEKASGESDASMVIEVGGAGAQESERDSRRPGPDTPKPLEDPKVGEVVSQDLATQEIKRVRXXXXXXXXXXXXXXXXXXXXXXGVPENGVTPAEQQXXXXXXXPNGGGKAEGEEKSVLGETGKEGAPVGGSEPQIAGSKG 660
            GT A G EMEID             RR DGPEEDPSAGAVEKASGESDASMVIE GGAGAQESERDSRRPGP+TPKPLEDPKV EVVSQDLATQEIKR                                   QQ       PNGGGKAEGEEKS LG+ GKE    GGSEPQ AGSKG
Sbjct:  272 GTAALGMEMEIDXXXXXXXXXXXXXRREDGPEEDPSAGAVEKASGESDASMVIEAGGAGAQESERDSRRPGPETPKPLEDPKVDEVVSQDLATQEIKR----------------------------------RQQPR-----PNGGGKAEGEEKSGLGKLGKERTSAGGSEPQTAGSKG 411
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BLAST of mRNA_Ecto-sp8_S_contig934.30801.1 vs. uniprot
Match: D8LMT8_ECTSI (Internalin protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMT8_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 1.990e-34
Identity = 76/84 (90.48%), Postives = 76/84 (90.48%), Query Frame = 1 
Query:  121 AGTTAPGTEMEIDDPPAATPAQSKKRRRGDGPEEDPSAGAVEKASGESDASMVIEVGGAGAQESERDSRRPGPDTPKPLEDPKV 372
            AGTTAPGTEMEIDDPPAATPAQS      DGPEEDPSAGAVEKASGESDASMVIE GGAGAQESERDSRRPGPDTPKPLEDPK 
Sbjct:  304 AGTTAPGTEMEIDDPPAATPAQSXXXXXEDGPEEDPSAGAVEKASGESDASMVIEAGGAGAQESERDSRRPGPDTPKPLEDPKA 387
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig934.30801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSE9_9PHAE2.420e-4260.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMT8_ECTSI1.990e-3490.48Internalin protein n=1 Tax=Ectocarpus siliculosus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig934contigEcto-sp8_S_contig934:1751..2708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score143.3
Seed ortholog evalue1.4e-31
Seed eggNOG ortholog2880.D8LMT8
Model size683
KEGG koko:K11649
KEGG Pathwayko04714,ko05225,map04714,map05225
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000429,GO:0000436,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0005975,GO:0005984,GO:0005985,GO:0005987,GO:0006066,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006996,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009056,GO:0009311,GO:0009313,GO:0009605,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010453,GO:0010455,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016052,GO:0016514,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031494,GO:0031496,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0032991,GO:0042221,GO:0042393,GO:0043044,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044107,GO:0044109,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044275,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045595,GO:0045597,GO:0045893,GO:0045935,GO:0045944,GO:0045990,GO:0045991,GO:0046164,GO:0046352,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070603,GO:0070887,GO:0071496,GO:0071704,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1901575,GO:1901615,GO:1901616,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1904949,GO:2000112,GO:2000241,GO:2000243,GO:2001141
Exons2
EggNOG free text desc.chromatin remodeling
EggNOG OGsCOG5259@1,KOG1279@2759
Cds size681
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145288.8729174-CDS-Ecto-sp8_S_contig934:1750..21751681145288.8729174-CDS-Ecto-sp8_S_contig934:1750..2175Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig934 1751..2175 -
1681145288.8981118-CDS-Ecto-sp8_S_contig934:2452..27081681145288.8981118-CDS-Ecto-sp8_S_contig934:2452..2708Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig934 2453..2708 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig934.30801.1prot_Ecto-sp8_S_contig934.30801.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig934 1751..2708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig934.30801.1

>prot_Ecto-sp8_S_contig934.30801.1 ID=prot_Ecto-sp8_S_contig934.30801.1|Name=mRNA_Ecto-sp8_S_contig934.30801.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=227bp
SKEATEGPKEATEGSKEATEGSKEATEGSKEATEDPKEATAGTTAPGTEM
EIDDPPAATPAQSKKRRRGDGPEEDPSAGAVEKASGESDASMVIEVGGAG
AQESERDSRRPGPDTPKPLEDPKVGEVVSQDLATQEIKRVRRTESSPSPP
AAAAAAAVAAGVDGVPENGVTPAEQQQQPQQPQPNGGGKAEGEEKSVLGE
TGKEGAPVGGSEPQIAGSKGDGQGKED
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mRNA from alignment at Ecto-sp8_S_contig934:1751..2708-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig934.30801.1 ID=mRNA_Ecto-sp8_S_contig934.30801.1|Name=mRNA_Ecto-sp8_S_contig934.30801.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=958bp|location=Sequence derived from alignment at Ecto-sp8_S_contig934:1751..2708- (Ectocarpus species8 EcLAC_412)
TCGAAAGAAGCGACAGAGGGACCAAAAGAAGCGACGGAGGGATCGAAAGA
AGCGACGGAGGGGTCGAAAGAAGCGACTGAGGGATCGAAAGAAGCGACTG
AGGATCCTAAGGAAGCGACTGCAGGAACGACCGCGCCAGGAACGGAGATG
GAAATTGACGACCCACCTGCCGCTACCCCTGCCCAATCAAAGAAACGCCG
CCGAGGAGACGGGCCAGAAGAAGACCCTAGCGCAGGGGCAGTTGAGAAGG
CCTCAGGTGTGTCTTCAGGAATATTTCGGCTTTAAGACGTACAATAGCAC
AGAGATGGGCCTTCGGGAGGAATGGGGTATGGGCGCTCTCTCCTGCGACT
GAGAGGCTGGGATGTCAAAGTGTACATTCGTCGCGCAAGTTTGGAAATGT
TAATGTTGCGCTAGAACGCCTGCACTAAAACCTTTCATCGGTTCTTTTCT
CGTTCTCGCTACGGCTGTATCGTGCATGTAAGCCTCTCCTTACCCGACTT
GCCGCACGATCCATTTTTTGCCGTCCCCACCAGGAGAGAGCGACGCTAGC
ATGGTGATCGAGGTCGGCGGCGCCGGGGCTCAAGAAAGCGAGCGGGACTC
GCGGCGGCCAGGCCCGGACACGCCCAAGCCACTGGAGGACCCGAAGGTGG
GCGAGGTCGTGTCGCAAGACCTGGCCACCCAGGAGATCAAGCGTGTCAGG
AGAACCGAGAGCAGCCCTTCCCCGCCGGCAGCGGCAGCGGCGGCGGCGGT
AGCGGCGGGGGTCGATGGAGTGCCCGAGAACGGCGTGACACCGGCCGAAC
AGCAGCAGCAGCCGCAGCAGCCGCAACCGAACGGCGGCGGCAAGGCCGAA
GGCGAGGAGAAGAGCGTGCTGGGGGAAACGGGAAAAGAAGGGGCACCAGT
AGGCGGCAGCGAGCCGCAGATAGCGGGAAGCAAAGGCGATGGACAAGGCA
AAGAAGAT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig934:1751..2708-

>mRNA_Ecto-sp8_S_contig934.30801.1 ID=mRNA_Ecto-sp8_S_contig934.30801.1|Name=mRNA_Ecto-sp8_S_contig934.30801.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=681bp|location=Sequence derived from alignment at Ecto-sp8_S_contig934:1751..2708- (Ectocarpus species8 EcLAC_412)
TCGAAAGAAGCGACAGAGGGACCAAAAGAAGCGACGGAGGGATCGAAAGA
AGCGACGGAGGGGTCGAAAGAAGCGACTGAGGGATCGAAAGAAGCGACTG
AGGATCCTAAGGAAGCGACTGCAGGAACGACCGCGCCAGGAACGGAGATG
GAAATTGACGACCCACCTGCCGCTACCCCTGCCCAATCAAAGAAACGCCG
CCGAGGAGACGGGCCAGAAGAAGACCCTAGCGCAGGGGCAGTTGAGAAGG
CCTCAGGAGAGAGCGACGCTAGCATGGTGATCGAGGTCGGCGGCGCCGGG
GCTCAAGAAAGCGAGCGGGACTCGCGGCGGCCAGGCCCGGACACGCCCAA
GCCACTGGAGGACCCGAAGGTGGGCGAGGTCGTGTCGCAAGACCTGGCCA
CCCAGGAGATCAAGCGTGTCAGGAGAACCGAGAGCAGCCCTTCCCCGCCG
GCAGCGGCAGCGGCGGCGGCGGTAGCGGCGGGGGTCGATGGAGTGCCCGA
GAACGGCGTGACACCGGCCGAACAGCAGCAGCAGCCGCAGCAGCCGCAAC
CGAACGGCGGCGGCAAGGCCGAAGGCGAGGAGAAGAGCGTGCTGGGGGAA
ACGGGAAAAGAAGGGGCACCAGTAGGCGGCAGCGAGCCGCAGATAGCGGG
AAGCAAAGGCGATGGACAAGGCAAAGAAGAT
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