prot_Ecto-sp8_S_contig9231.30622.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig9231.30622.1
Unique Nameprot_Ecto-sp8_S_contig9231.30622.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length212
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9231.30622.1 vs. uniprot
Match: A0A6H5JEW1_9PHAE (FAD-binding PCMH-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEW1_9PHAE)

HSP 1 Score: 269 bits (687), Expect = 1.530e-83
Identity = 131/142 (92.25%), Postives = 137/142 (96.48%), Query Frame = 0 
Query:   71 MSSTATEKSPGWEERWSTEESQPILKKFAAEEKKLHDDDKKKPFSWLPCLGAKDSVDDESEVDVDSNLQEVKAGKVDKDGNFDNWASTAPSKPGKVFSPESASEVQDILAEARALSPSPKIRCTGSSHSWTNLFADDGAWLV 212
            MSSTATEKSPGWEERWSTEESQ IL+KFAAEEKK+HDDDKKKPF WLPCLGA DSVDDESEVDVDSNLQEVKAGKVDKDGNF+NWASTAPSKPGKV +P+S SEVQDILAEARAL+PSPKIRCTGSSHSWTNLFADDGAWLV
Sbjct:    1 MSSTATEKSPGWEERWSTEESQAILQKFAAEEKKMHDDDKKKPFRWLPCLGATDSVDDESEVDVDSNLQEVKAGKVDKDGNFNNWASTAPSKPGKVITPKSVSEVQDILAEARALAPSPKIRCTGSSHSWTNLFADDGAWLV 142
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BLAST of mRNA_Ecto-sp8_S_contig9231.30622.1 vs. uniprot
Match: A0A6H5L8C4_9PHAE (FAD-binding PCMH-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L8C4_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.500e-18
Identity = 39/67 (58.21%), Postives = 51/67 (76.12%), Query Frame = 0 
Query:  146 VDKDGNFDNWASTAPSKPGKVFSPESASEVQDILAEARALSPSPKIRCTGSSHSWTNLFADDGAWLV 212
            V KDG F NWA+T  + P KV  P+S  +VQ+IL++AR  +P PKIRC GS HSWT+LFADDG+W++
Sbjct:   66 VSKDGEFRNWAATVQTAPAKVLKPKSIRDVQEILSQARCRNPMPKIRCVGSGHSWTHLFADDGSWVL 132
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9231.30622.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JEW1_9PHAE1.530e-8392.25FAD-binding PCMH-type domain-containing protein n=... [more]
A0A6H5L8C4_9PHAE1.500e-1858.21FAD-binding PCMH-type domain-containing protein n=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016167FAD-binding, type PCMH, subdomain 1GENE3D3.30.43.10coord: 145..212
e-value: 1.3E-13
score: 52.2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..212
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
IPR036318FAD-binding, type PCMH-like superfamilySUPERFAMILY56176FAD-binding/transporter-associated domain-likecoord: 152..208

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9231contigEcto-sp8_S_contig9231:909..6980 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9231.30622.1mRNA_Ecto-sp8_S_contig9231.30622.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig9231 908..6980 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig9231.30622.1 ID=prot_Ecto-sp8_S_contig9231.30622.1|Name=mRNA_Ecto-sp8_S_contig9231.30622.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=212bp
GRTASPLLIVLFEPAHPLRPPSLKCAAAAVLLLCSCYRCCSRWKEIHKQT
ICSFCTAGHPLSREREIASSMSSTATEKSPGWEERWSTEESQPILKKFAA
EEKKLHDDDKKKPFSWLPCLGAKDSVDDESEVDVDSNLQEVKAGKVDKDG
NFDNWASTAPSKPGKVFSPESASEVQDILAEARALSPSPKIRCTGSSHSW
TNLFADDGAWLV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016167FAD-bd_PCMH_sub1
IPR036318FAD-bd_PCMH-like_sf