mRNA_Ecto-sp8_S_contig9231.30622.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9231.30622.1
Unique NamemRNA_Ecto-sp8_S_contig9231.30622.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9231.30622.1 vs. uniprot
Match: A0A6H5JEW1_9PHAE (FAD-binding PCMH-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEW1_9PHAE)

HSP 1 Score: 269 bits (687), Expect = 1.530e-83
Identity = 131/142 (92.25%), Postives = 137/142 (96.48%), Query Frame = 1 
Query:  211 MSSTATEKSPGWEERWSTEESQPILKKFAAEEKKLHDDDKKKPFSWLPCLGAKDSVDDESEVDVDSNLQEVKAGKVDKDGNFDNWASTAPSKPGKVFSPESASEVQDILAEARALSPSPKIRCTGSSHSWTNLFADDGAWLV 636
            MSSTATEKSPGWEERWSTEESQ IL+KFAAEEKK+HDDDKKKPF WLPCLGA DSVDDESEVDVDSNLQEVKAGKVDKDGNF+NWASTAPSKPGKV +P+S SEVQDILAEARAL+PSPKIRCTGSSHSWTNLFADDGAWLV
Sbjct:    1 MSSTATEKSPGWEERWSTEESQAILQKFAAEEKKMHDDDKKKPFRWLPCLGATDSVDDESEVDVDSNLQEVKAGKVDKDGNFNNWASTAPSKPGKVITPKSVSEVQDILAEARALAPSPKIRCTGSSHSWTNLFADDGAWLV 142
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BLAST of mRNA_Ecto-sp8_S_contig9231.30622.1 vs. uniprot
Match: A0A6H5L8C4_9PHAE (FAD-binding PCMH-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L8C4_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.500e-18
Identity = 39/67 (58.21%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:  436 VDKDGNFDNWASTAPSKPGKVFSPESASEVQDILAEARALSPSPKIRCTGSSHSWTNLFADDGAWLV 636
            V KDG F NWA+T  + P KV  P+S  +VQ+IL++AR  +P PKIRC GS HSWT+LFADDG+W++
Sbjct:   66 VSKDGEFRNWAATVQTAPAKVLKPKSIRDVQEILSQARCRNPMPKIRCVGSGHSWTHLFADDGSWVL 132
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9231.30622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JEW1_9PHAE1.530e-8392.25FAD-binding PCMH-type domain-containing protein n=... [more]
A0A6H5L8C4_9PHAE1.500e-1858.21FAD-binding PCMH-type domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9231contigEcto-sp8_S_contig9231:908..6980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score278.5
Seed ortholog evalue2.6e-72
Seed eggNOG ortholog2880.D7FR14
Model size637
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG OGs2E419@1,2SB01@2759
Cds size636
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145275.6827824-CDS-Ecto-sp8_S_contig9231:908..10011681145275.6827824-CDS-Ecto-sp8_S_contig9231:908..1001Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9231 909..1001 -
1681145275.6986787-CDS-Ecto-sp8_S_contig9231:2167..23461681145275.6986787-CDS-Ecto-sp8_S_contig9231:2167..2346Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9231 2168..2346 -
1681145275.7134042-CDS-Ecto-sp8_S_contig9231:2932..30051681145275.7134042-CDS-Ecto-sp8_S_contig9231:2932..3005Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9231 2933..3005 -
1681145275.7251337-CDS-Ecto-sp8_S_contig9231:3938..40571681145275.7251337-CDS-Ecto-sp8_S_contig9231:3938..4057Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9231 3939..4057 -
1681145275.7358-CDS-Ecto-sp8_S_contig9231:6808..69801681145275.7358-CDS-Ecto-sp8_S_contig9231:6808..6980Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9231 6809..6980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9231.30622.1prot_Ecto-sp8_S_contig9231.30622.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9231 909..6980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9231.30622.1

>prot_Ecto-sp8_S_contig9231.30622.1 ID=prot_Ecto-sp8_S_contig9231.30622.1|Name=mRNA_Ecto-sp8_S_contig9231.30622.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=212bp
GRTASPLLIVLFEPAHPLRPPSLKCAAAAVLLLCSCYRCCSRWKEIHKQT
ICSFCTAGHPLSREREIASSMSSTATEKSPGWEERWSTEESQPILKKFAA
EEKKLHDDDKKKPFSWLPCLGAKDSVDDESEVDVDSNLQEVKAGKVDKDG
NFDNWASTAPSKPGKVFSPESASEVQDILAEARALSPSPKIRCTGSSHSW
TNLFADDGAWLV
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mRNA from alignment at Ecto-sp8_S_contig9231:908..6980-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9231.30622.1 ID=mRNA_Ecto-sp8_S_contig9231.30622.1|Name=mRNA_Ecto-sp8_S_contig9231.30622.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=6073bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9231:908..6980- (Ectocarpus species8 EcLAC_412)
GGAAGGACCGCATCCCCTTTGTTGATCGTTCTCTTCGAGCCAGCTCACCC
GCTCCGTCCCCCAAGCCTCAAGTGTGCTGCTGCTGCTGTGCTCCTGCTGT
GCTCCTGCTATCGGTGCTGCTCTCGTTGGAAGGAGATCCACAAGCAAACC
ATCTGTTCCTTCTGCACAGCAGGTACGTAATGCGCTGCTTGCTGTTGATG
TTGATGCATAATATATTGTTGTTGATGTTGTTGCATTATCCGTTCCACAG
ACGTACAGCAGCAGTGTGTGCTAGCACGTCTCACGCCCGCCCCGCGTGGC
CTTCTTGCATAGACTGCCGCGAGTTGTTGCCAGCGTGCTTGAGAGGAGGG
AGAACAAGGCCGTTGTTGTCGTGTGCTTCGCCGCCTTCTGAGAGTAGTAG
GGGGAGTGTGATTTCTGCGCGCATTTGTTCGTTCGGATGAACTTCTTGTT
GAGCAGGCTCCACGAGCTACCTGTGATGTGGCAAAGTAGAAGCCGCTCGC
CTCGCGGGTTCAGCTGCTACCCTCGTAACCTTCTGACCCAATGTTTCCCT
CTCTCTAGATTGCATGTTCTAATCTCTCTGGCTTGAAAACTTTTAAGCAC
AAGAGGTGGTCAACAAGTCGTACAGAAAATGCGTGAAGAAGGACATGCTG
TAATAATACCCCACAGCAGAAAAAATAACGCACCGCAGAGGGGGAAGGAA
AGGAAGACGGTGTAGAGTTGTTTTCCTCCTGTCTCTGCTGCTGTGTGACC
CCAGCTGGTGTTTCAAAGACATGCATGCATCATGCATGCTAACTGCGCCG
AAAAAGCGTTGAACGTTGGGAGCCCAAACAGATGGATGGGACGAAAGCAC
TTTCAATTTCTCAAAGTCGGGGGCCCCCTCAAATATGGTGCCCCAACCCC
TTACTTTTACGACTGCAGCACAGCACAGCAGAGTAGGAGGGCCCTCAGCA
GGTGCCGGTATGGACCACACCAGTTCATCGGTAACGTTCCAGAGAGGCTG
GCACTATTCAGAACAGGGATAGATAGGTTTTATTTAGTACAGGAGTGGAC
ACTATTATATTATACTGCCCGCGGGAGGTTTGACCGGCACGAACCGGGGT
CGGTACTATGTAGCTAGGTAGGCACTATTTTTCCTTTCCTCCGGCACTAT
TTACTAGTCTAAATAAACAAGGTCCTCTATACAAACTTGCTGCTGTATTG
GCATTTTGGTACAATCACGACCTTTTGTTCACTGAATAGTATGCATAGTA
GAGCGTGACAACAGGCGTTACCGCACTCTTCAGGGTACTACATCCATCCC
TTGATGAATGCGGGTCGTTCCCACTCGTCGTTTCCTCGGATCAGTACAAT
GCTAACGCTAGTACTTGTATGTGGTATGCTGTGTAGGCTCGGGTGCACGG
ACGGGGAGAAGGTGCTGGGCTGTATCTGTTGCCGGCGCGTGGTGATTGTC
TTGAGTGCAGTGTTTGCGTGCTGAACTACTGTACGTATGTTCCCCACGAA
GATGATGTAGACTTATAGTCGCTACATGGGTTAGTGAGCGAGAGAAACAA
GAGCCGTTATGTACACACACTGACATGTCTCCTGTCTGTGTGATCTCGTT
TCCAAAGGGATGTGCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTACTGT
TATCGCCAAGAGTTGCCTACCTCGTTGTCTAGACTACATTTCTTCAAGAA
AACCGAATAGGCAAAATGGACGAATCCCCTTGCGGTCACAAGCGAGATCA
ATTACCCCAAAACAAGGTACCATCATACTTACCCAAATATATCAAGGACC
CGCGTAAAAAGCGATTTGCACTCGCGAACCTAACCCTGAAGATGAAAGCT
CCTGAACTTTCGGAGCCCAGCAAGATATACTATTCGCAGACAAACAGGGT
ATCATGTCACTATTACCGCACATATGATAACCGCACCAACTTGCCATATG
GTCGGAGAGTTGGCATTGGCATTGATCGGACAATTGGCACCAACCATCGT
GCTGCCAAGAGTCAAGAACGAGGGTGGGTAAATGCGAATTTCGCATGCGG
GGGGGGGGGGGGGGGGGGGGGGGGATTGGGGGGGGGGTTTTCTTTTTTTT
TTTNNNNNNNNNNGAGAGAAAGAAGAGGAAGGGGGGGGGGGGGGAAAGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGAGAGATCTCGTGGGCGTT
TGTCCTCTTTTTTTTGCTGGCGCCGGCACACATTACATACAGAAGCGCGT
TTGTTTCGCGTTTGTTTGTGGTTGCGTCCTGGTACGTACGCCTCTAGAGA
CCCATGTGAACGCTTGATGAGCTACATACTACAAAGCCACAGACGAATGA
TTACAAACAACAGACGGACAGTTGGCACACAATTTGGAGAGCTGCGATGG
GAGATGATAAGGGTACGATAGAGGTCGAGGCACGAATTTTTTGCCAAACA
CGATCGATCGCACGCTGGGGGAACCGTTTTTGATCTGGCTCCTACGGTGG
TAATCCATGGACGACGTAGAGCCACCGCCCCAACTTCGGAAGCTTGAGTC
GCAAGTTAGCGTTGTATGTTAGATAAACACTTACCCACCATGCTACTCAG
TCAGCGCTTTATCTAACAAAAAATACACGCACGGGTTCGAATCCCGGCTG
GATCACACTATGCTACTCAGTCAGCTATGTCTTCATCTAACATTGTATAA
GTATGCGCTATAGTGTAGTACGGGGAGAGAGTTCATCGTCAGGCATTGAA
GTGAGCCCTGTGATCCGACTTTGGACGTACGTTTTTCGTAATTGTCCACC
TGTTCTGTGCGGTGTTTGGCTCCGTTACAGACCTTTCCAGTATGCCATTC
GATGTTCGCCCGAGCGTTACGTAAACCTGCCTTCTATTGCGTCCGTTTGT
CAATCTATGGATGGATCCCCCAGGTCATCCGTTGTCCAGGGAGAGAGAGA
TTGCCTCAAGCATGTCGTCTACCGCAACGGAGAAGTCGCCAGGCTGGGAG
GAGCGCTGGTCTACCGAAGAGAGCCAACCCATCCTGAAGAAGGTGCTGCT
GTGCTGGGAGAGTTGTTGACTGTGATGGTGTCTCGTGGTGGCGGTGGTGG
TGGTGTATGTGCTCTTTGTTGTTAGCATCGACCGCGCGAACCGGCTGACC
AATGAAAGGACGTCAGTCTTAGTGCGGTTGAAAACACAAAACACTTGTAT
CTGCCATGAACTGGGACCCCGTGAGGGGGCAGCATGGGGGAGGTGTGTTT
GTGTGTGTGCGTTTGTGTCGATCCGTGTTCTTGGGGCTGTCGTTGAGGGT
GTTTTTGTGCTGCTGATGTTGACGTTCTCGTTGTTCTCGTCGTCGTTGTT
GTTGTTTTTATCATGGGTGGTTTTGTTGTTGCGGCTGACGCAGTTGTCAT
AGTCGCTGTATGTTGTGGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTTTTGCCGTTAGCAACCAGCTTGCTTTCGTCATACA
CGAGTGAAGAAGCACAAATCAAATCCCTCATCGAAAACGTTGCTGTGTCC
CCCCCCCCCTCGGAGCAAACAGCCACAAAAGAAAACGACGAAAATGCATG
ACACCAACAACCTCCCCTTTTGTTATTGGCCCCCTATAGACATCGAAACT
TGTTGTTTTCGTCGAGTATCGAACATGTTTGCCTCCCTTTGATCTTTGCC
GTTGTTTGCCATGTCCCTCGTGGTCACCCTCGCTATCAATGGTTCAGCTA
CCACTTGTGGCGTTGGTGTGCCGGCGGGGGCGGGGGGCGGGGGGCGAGGG
CAGGGGGGCGTACTCACGTTTTGCATACCCTTATTGATAGACATTATCGC
TGAGCCGCATTGACAACTGAACTTGTCGTCGTCTTCGTCTCCCTTCCTAA
ATCTCCGTCTACGTCGTGCCTGTTGGGGTGGGGGGGGGTCGCCGATAAAC
CTGTTCCCTTCACCGGCGCACCCAGTTTGCCGCGGAGGAGAAAAAGCTGC
ATGACGACGACAAAAAGAAGCCCTTCAGCTGGCTTCCTTGCCTAGGAGGT
GAGAGCCGCCGCGAGTGGCGTGTCCGGCATGTCTCATTTCTCGTTTTCGG
CGATGTATCTGTCTCAGGGTTCCCCCTCCCCTGCATCTCGGTCGTTGTTG
TTGCTGTGGTCGTCACGCGCGTTAAGAAACGTTTCCGATCTACATTCAGG
CGTCAGGTACGCAGCTTTTGCATCCCCTACACCAACAATGACTTTCCCTC
TACATAGATCATTCCCGGGGAGAGTCTGGGTACACACGGCTGACTATCCT
TATCTTTAGTTCGTTGTCCAACCAACGAACCTGATCCGATCCTGTCCTTC
AAATGCCCCTCCGTCTCGATACTATTCCCGGTTACGGGGGGTTTGCGGGC
GGCGCTGCAAGTATCTAGTCTCCTCAACCAAAGGCTCGGTCGACGACGAC
TGCATCTCTATCATATAGCTTTTCGGGAGAGCGTCAGGGAGTACACGGTA
AACTCTCCTGTACTACGCCATGTTTCGTCAACGAACCGCATAAGCTGATC
CGACCCCGTTCTTCATCCCCGCTTCGTCCTGATTCTCTTCCCGACGCGTG
GGGCTGCAAACAATATTTTATCTTCCAACATCAGCCAAAGACTCGGTCGA
CGATGAGTCGGAAGTGGACGTGGACTCAAACCTGCAAGAGGTGAAAGCGG
GCAAGGTCGACAAGGACGGGAACTTCGACAACTGGGCCTCCACGGCGCCT
TCGAAGCCCGGGAAGGTTTTCTCCCCCGAGTCCGCGTCGGAGGTGCAGGA
CATCCTGGCCGAGGTGAGTTGTGGCAGAAGACGTTGTGCTGTACGGCTGC
TTCGTGCAGATAGATGTTGTGCTATAGCTGGTTTGGCAGATAGTAGGTGT
TGTGCTACATGTGCCGCTCTGTTTTAATATTGGGTTGGTTAGGCATGTTG
AGAAGTAGTAGGTGTTGTGCTACATGTGCCGCTCTGTTTTAATGTTTTGG
GTTGGTTGGGCATGTTGTGCTATATATATGGTATGCCGCTCTATATGAAA
GGTTGCGTTGGTTGGGCAGATAGATGCTGTGCTGTGCTACGCCTCTCCGA
TAGGCGTTGTACAACAACCACCCCAGTTGGAAGTTGAGGTGAGTGTGGGC
AAGATGGATGTCGTATTTATGTGTGCCACTCTGTCTAAAAATCATGACGG
CAATTCGGACGCAAACGGGAGTATCACAATGATCCCCATATTTCCAACGG
TCCCTATTTTTCCAAACAAGGTGATACTGCTGCAGTGTATGCAGGTCTGC
TATTAAATAATGTGCGATTTTGCAGTGCGAGGGAGGTGTGTAGAACACGC
AGCGTGCGGGATCAAAAGCCTCTTGATCAACGCCGGCTTCGGCGACCATT
AGACGCGTGTGCGTATGTACATCTTCATCTTCCCTACATTTACAAGGTCG
TATGTAGCGCAGGGTCCCACAAAGGTGCCGGGTGCCGCAGCATCGCGGCT
TTCTGGTTGTTTTTCACCATGCCGCACTTCTCGCCTGATACAGTTTTTTT
GTGGTAGCACACCTATTTCCTGTCGTAAACATGAAACGTGTCGGTGATGT
TGAATGCACCTATTTCTTGTCGTAAACATAACACCTTTCGGTGATACTGA
ATACACCTATTTCTTGTCGTAAACATAAAACCTTTCGGTGATATTGAATA
CACATGTTTCCTGTCGTAAACACAAAACCTTGCGGTGATATTTGAGTACA
CCTTCTCCCTGTCGTAAACATAAAACCTTTCGTGATATTGAATACTGTAA
CACAAAGGAGCAAGGTGGAAGTACACACGCCTTGGAGGCGAGAGCTCAAG
AAAATTGGTTGTTTCACTTGTCAGTGTAGAAAAGGCAACCACAACAACAA
CGACAGCAAGCTAGTCCTGGTGCCACCACCGCGCCGCCGCCGCCGCCGCC
GCCGCCGCCCAACTCATCGTGCTCCTCAGGCCAGGGCTTTGTCGCCCTCA
CCCAAGATCCGATGCACCGGTTCGAGCCACTCGTGGACCAACCTCTTCGC
CGACGATGGTGCCTGGCTCGTGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9231:908..6980-

>mRNA_Ecto-sp8_S_contig9231.30622.1 ID=mRNA_Ecto-sp8_S_contig9231.30622.1|Name=mRNA_Ecto-sp8_S_contig9231.30622.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9231:908..6980- (Ectocarpus species8 EcLAC_412)
GGAAGGACCGCATCCCCTTTGTTGATCGTTCTCTTCGAGCCAGCTCACCC
GCTCCGTCCCCCAAGCCTCAAGTGTGCTGCTGCTGCTGTGCTCCTGCTGT
GCTCCTGCTATCGGTGCTGCTCTCGTTGGAAGGAGATCCACAAGCAAACC
ATCTGTTCCTTCTGCACAGCAGGTCATCCGTTGTCCAGGGAGAGAGAGAT
TGCCTCAAGCATGTCGTCTACCGCAACGGAGAAGTCGCCAGGCTGGGAGG
AGCGCTGGTCTACCGAAGAGAGCCAACCCATCCTGAAGAAGTTTGCCGCG
GAGGAGAAAAAGCTGCATGACGACGACAAAAAGAAGCCCTTCAGCTGGCT
TCCTTGCCTAGGAGCCAAAGACTCGGTCGACGATGAGTCGGAAGTGGACG
TGGACTCAAACCTGCAAGAGGTGAAAGCGGGCAAGGTCGACAAGGACGGG
AACTTCGACAACTGGGCCTCCACGGCGCCTTCGAAGCCCGGGAAGGTTTT
CTCCCCCGAGTCCGCGTCGGAGGTGCAGGACATCCTGGCCGAGGCCAGGG
CTTTGTCGCCCTCACCCAAGATCCGATGCACCGGTTCGAGCCACTCGTGG
ACCAACCTCTTCGCCGACGATGGTGCCTGGCTCGTG
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