mRNA_Ecto-sp8_S_contig92212.30609.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig92212.30609.1
Unique NamemRNA_Ecto-sp8_S_contig92212.30609.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig92212.30609.1 vs. uniprot
Match: D7FUN3_ECTSI (Arsenite translocating ATPase like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUN3_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 5.910e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:   13 QSLGLSEFSEVLANPPPGIDELVALSRVLKLARSEE 120
            +SLGLSEFSEVLANPPPGIDELVALSRVLKLARSEE
Sbjct:  244 ESLGLSEFSEVLANPPPGIDELVALSRVLKLARSEE 279
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BLAST of mRNA_Ecto-sp8_S_contig92212.30609.1 vs. uniprot
Match: F0YH32_AURAN (ArsA_ATPase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YH32_AURAN)

HSP 1 Score: 52.8 bits (125), Expect = 6.380e-7
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 VLSCQSLGLSEFSEVLANPPPGIDELVALSRVLKLARSE 117
            V + +SLGL EF E+LA+PPPGIDELVAL+ V+K AR E
Sbjct:  105 VEAVRSLGLDEFVELLASPPPGIDELVALADVVKYARDE 143
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BLAST of mRNA_Ecto-sp8_S_contig92212.30609.1 vs. uniprot
Match: A0A7S4A6K7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6K7_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.640e-6
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 VLSCQSLGLSEFSEVLANPPPGIDELVALSRVLKLARSE 117
            V + ++LG  EF E+LANPPPG+DELVAL+ +LK AR +
Sbjct:  131 VEAVRALGADEFVELLANPPPGVDELVALADILKYARDD 169
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BLAST of mRNA_Ecto-sp8_S_contig92212.30609.1 vs. uniprot
Match: A0A7S3UP94_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UP94_HETAK)

HSP 1 Score: 50.1 bits (118), Expect = 6.810e-6
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   13 QSLGLSEFSEVLANPPPGIDELVALSRVLKLARSE 117
            Q LGL E   VL NPPPG+DELVAL++V++LAR E
Sbjct:   49 QQLGLKEMVGVLRNPPPGLDELVALAKVVRLARGE 83
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BLAST of mRNA_Ecto-sp8_S_contig92212.30609.1 vs. uniprot
Match: A0A7S0W1Q8_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W1Q8_9CRYP)

HSP 1 Score: 49.3 bits (116), Expect = 1.270e-5
Identity = 19/34 (55.88%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:   19 LGLSEFSEVLANPPPGIDELVALSRVLKLARSEE 120
            +GL EF+++L +PPPG+DE+VALS+V+ L +SE+
Sbjct:  548 IGLDEFADILESPPPGVDEVVALSKVMNLVKSEK 581
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BLAST of mRNA_Ecto-sp8_S_contig92212.30609.1 vs. uniprot
Match: A0A6U2HNB3_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2HNB3_HEMAN)

HSP 1 Score: 49.3 bits (116), Expect = 1.270e-5
Identity = 19/34 (55.88%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:   19 LGLSEFSEVLANPPPGIDELVALSRVLKLARSEE 120
            +GL EF+++L +PPPG+DE+VALS+V+ L +SE+
Sbjct:  547 IGLDEFADILESPPPGVDEVVALSKVMNLVKSEK 580
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BLAST of mRNA_Ecto-sp8_S_contig92212.30609.1 vs. uniprot
Match: A0A7S2B6R7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B6R7_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.280e-5
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   16 SLGLSEFSEVLANPPPGIDELVALSRVLKLARSEE 120
            +LGL EF+ +L NPPPG+DELVAL+ V++LAR  +
Sbjct:  170 NLGLDEFAGILRNPPPGVDELVALNAVVRLARGTD 204
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BLAST of mRNA_Ecto-sp8_S_contig92212.30609.1 vs. uniprot
Match: A0A7S2ZDM5_9RHOD (Hypothetical protein n=4 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZDM5_9RHOD)

HSP 1 Score: 48.1 bits (113), Expect = 3.270e-5
Identity = 21/31 (67.74%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:   22 GLSEFSEVLANPPPGIDELVALSRVLKLARS 114
            GL+EFS++LAN PPGIDELVAL++V+ L +S
Sbjct:  423 GLAEFSDILANTPPGIDELVALTQVVSLVKS 453
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BLAST of mRNA_Ecto-sp8_S_contig92212.30609.1 vs. uniprot
Match: A0A7S2ZDW2_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZDW2_9RHOD)

HSP 1 Score: 48.1 bits (113), Expect = 3.270e-5
Identity = 21/31 (67.74%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:   22 GLSEFSEVLANPPPGIDELVALSRVLKLARS 114
            GL+EFS++LAN PPGIDELVAL++V+ L +S
Sbjct:  423 GLAEFSDILANTPPGIDELVALTQVVSLVKS 453
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BLAST of mRNA_Ecto-sp8_S_contig92212.30609.1 vs. uniprot
Match: A0A7S2ZDM4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZDM4_9RHOD)

HSP 1 Score: 48.1 bits (113), Expect = 3.270e-5
Identity = 21/31 (67.74%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:   22 GLSEFSEVLANPPPGIDELVALSRVLKLARS 114
            GL+EFS++LAN PPGIDELVAL++V+ L +S
Sbjct:  208 GLAEFSDILANTPPGIDELVALTQVVSLVKS 238
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig92212.30609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FUN3_ECTSI5.910e-1397.22Arsenite translocating ATPase like protein n=1 Tax... [more]
F0YH32_AURAN6.380e-766.67ArsA_ATPase domain-containing protein (Fragment) n... [more]
A0A7S4A6K7_9STRA3.640e-658.97Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3UP94_HETAK6.810e-665.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0W1Q8_9CRYP1.270e-555.88Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A6U2HNB3_HEMAN1.270e-555.88Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S2B6R7_9STRA1.280e-560.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2ZDM5_9RHOD3.270e-567.74Hypothetical protein n=4 Tax=Rhodosorus marinus Ta... [more]
A0A7S2ZDW2_9RHOD3.270e-567.74Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2ZDM4_9RHOD3.270e-567.74Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig92212contigEcto-sp8_S_contig92212:416..538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score69.7
Seed ortholog evalue3.6e-10
Seed eggNOG ortholog2880.D7FUN3
Model size123
KEGG koko:K01551
KEGG TC3.A.19.1,3.A.21.1,3.A.4.1
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.ATPase activity
EggNOG OGsCOG0003@1,KOG2825@2759
EC3.6.3.16
Cds size123
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145274.793407-CDS-Ecto-sp8_S_contig92212:415..5381681145274.793407-CDS-Ecto-sp8_S_contig92212:415..538Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig92212 416..538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig92212.30609.1prot_Ecto-sp8_S_contig92212.30609.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig92212 416..538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig92212.30609.1

>prot_Ecto-sp8_S_contig92212.30609.1 ID=prot_Ecto-sp8_S_contig92212.30609.1|Name=mRNA_Ecto-sp8_S_contig92212.30609.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=41bp
VLSCQSLGLSEFSEVLANPPPGIDELVALSRVLKLARSEE*
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mRNA from alignment at Ecto-sp8_S_contig92212:416..538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig92212.30609.1 ID=mRNA_Ecto-sp8_S_contig92212.30609.1|Name=mRNA_Ecto-sp8_S_contig92212.30609.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=123bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92212:416..538+ (Ectocarpus species8 EcLAC_412)
GTTTTGTCCTGCCAGAGCCTCGGCCTTTCGGAGTTCAGCGAGGTGTTGGC
CAACCCGCCCCCGGGGATCGATGAGCTGGTTGCTCTCTCGAGGGTTCTCA
AGCTGGCCCGTTCCGAAGAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig92212:416..538+

>mRNA_Ecto-sp8_S_contig92212.30609.1 ID=mRNA_Ecto-sp8_S_contig92212.30609.1|Name=mRNA_Ecto-sp8_S_contig92212.30609.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=123bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92212:416..538+ (Ectocarpus species8 EcLAC_412)
GTTTTGTCCTGCCAGAGCCTCGGCCTTTCGGAGTTCAGCGAGGTGTTGGC
CAACCCGCCCCCGGGGATCGATGAGCTGGTTGCTCTCTCGAGGGTTCTCA
AGCTGGCCCGTTCCGAAGAGTGA
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