mRNA_Ecto-sp8_S_contig9133.30452.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9133.30452.1
Unique NamemRNA_Ecto-sp8_S_contig9133.30452.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9133.30452.1 vs. uniprot
Match: D8LCN1_ECTSI (Breast cancer 2 like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN1_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 2.460e-57
Identity = 107/114 (93.86%), Postives = 109/114 (95.61%), Query Frame = 3 
Query:    3 GERSLHLARMQRIMETEAAGMEEEVMRELEETLPDSFRRMREAENPSSFFEALPAEGQKEVTDWRERHQQ--VMEGLRQKAMDERLRGMDGIDRRVRQLITLRVACVCPHTDTT 338
            GERSLHLARMQRIMETEAAGMEEEVMRELEE LPDSFRRMREAENPSSFFEALPAEG+KEVTDWRERHQQ  VMEGLRQKAMDERLR +DGIDRRVRQLITLRVACVCPH DTT
Sbjct: 3131 GERSLHLARMQRIMETEAAGMEEEVMRELEEALPDSFRRMREAENPSSFFEALPAEGRKEVTDWRERHQQARVMEGLRQKAMDERLRSVDGIDRRVRQLITLRVACVCPHADTT 3244
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BLAST of mRNA_Ecto-sp8_S_contig9133.30452.1 vs. uniprot
Match: A0A6H5JH10_9PHAE (BRCA-2_helical domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH10_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 2.460e-57
Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = 3 
Query:    3 GERSLHLARMQRIMETEAAGMEEEVMRELEETLPDSFRRMREAENPSSFFEALPAEGQKEVTDWRERHQQVMEGLRQKAMDERLRGMDGIDRRVRQLITLRVACVCPHTDTT 338
            GERSLHLARMQRIMETEAAGMEEEVMRELEE LPDSFRRMREAENPSSFFEALPAE QKEVTDWRERHQQ  +GLRQKAMDERLRGMDGIDRRVRQLITLRVACVCPHTDTT
Sbjct: 3242 GERSLHLARMQRIMETEAAGMEEEVMRELEEALPDSFRRMREAENPSSFFEALPAEEQKEVTDWRERHQQA-QGLRQKAMDERLRGMDGIDRRVRQLITLRVACVCPHTDTT 3352
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9133.30452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCN1_ECTSI2.460e-5793.86Breast cancer 2 like n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JH10_9PHAE2.460e-5795.54BRCA-2_helical domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9133contigEcto-sp8_S_contig9133:3417..5654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score186.4
Seed ortholog evalue8.3e-45
Seed eggNOG ortholog2880.D8LCN1
Preferred nameBRCA2
Model size418
KEGG koko:K06236,ko:K08775
KEGG Pathwayko03440,ko03460,ko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,ko05200,ko05212,ko05224,map03440,map03460,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165,map05200,map05212,map05224
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000281,GO:0000711,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000781,GO:0000784,GO:0000793,GO:0000794,GO:0000795,GO:0000800,GO:0000910,GO:0001556,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0002020,GO:0002376,GO:0002520,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0004402,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006312,GO:0006325,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006978,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007059,GO:0007098,GO:0007127,GO:0007131,GO:0007140,GO:0007141,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0007548,GO:0007568,GO:0007569,GO:0007584,GO:0008022,GO:0008080,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008219,GO:0008283,GO:0008285,GO:0008406,GO:0008585,GO:0008608,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0009994,GO:0010033,GO:0010165,GO:0010212,GO:0010225,GO:0010243,GO:0010332,GO:0010468,GO:0010484,GO:0010485,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010639,GO:0010778,GO:0010948,GO:0012501,GO:0012505,GO:0014070,GO:0015630,GO:0015631,GO:0016043,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0023052,GO:0030097,GO:0030141,GO:0030154,GO:0030330,GO:0030879,GO:0031023,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031410,GO:0031619,GO:0031667,GO:0031974,GO:0031981,GO:0031982,GO:0032200,GO:0032355,GO:0032465,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033043,GO:0033260,GO:0033313,GO:0033365,GO:0033554,GO:0033593,GO:0033599,GO:0033600,GO:0033993,GO:0034212,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035264,GO:0035556,GO:0035825,GO:0036211,GO:0040007,GO:0040020,GO:0042127,GO:0042221,GO:0042493,GO:0042592,GO:0042770,GO:0042771,GO:0042772,GO:0042802,GO:0043009,GO:0043015,GO:0043060,GO:0043150,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043279,GO:0043412,GO:0043543,GO:0043966,GO:0043967,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044786,GO:0045005,GO:0045132,GO:0045137,GO:0045143,GO:0045184,GO:0045786,GO:0045787,GO:0045835,GO:0045893,GO:0045931,GO:0045934,GO:0045935,GO:0046483,GO:0046545,GO:0046660,GO:0048232,GO:0048285,GO:0048468,GO:0048469,GO:0048477,GO:0048478,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048589,GO:0048599,GO:0048608,GO:0048609,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050000,GO:0050678,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051276,GO:0051298,GO:0051301,GO:0051302,GO:0051303,GO:0051310,GO:0051311,GO:0051316,GO:0051321,GO:0051445,GO:0051447,GO:0051455,GO:0051598,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060249,GO:0060255,GO:0060322,GO:0061458,GO:0061640,GO:0061733,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0070198,GO:0070199,GO:0070200,GO:0070727,GO:0071695,GO:0071704,GO:0071840,GO:0071897,GO:0072331,GO:0072332,GO:0072594,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0097190,GO:0097193,GO:0097305,GO:0097327,GO:0097708,GO:0098687,GO:0098813,GO:0099086,GO:0099503,GO:0140013,GO:1901360,GO:1901362,GO:1901363,GO:1901563,GO:1901564,GO:1901576,GO:1901698,GO:1901700,GO:1902298,GO:1902680,GO:1902969,GO:1903046,GO:1903047,GO:1903506,GO:1903508,GO:1990426,GO:1990505,GO:2000026,GO:2000104,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2001141
Exons5
EggNOG free text desc.homologous chromosome orientation involved in meiotic metaphase I plate congression
EggNOG OGsKOG4751@1,KOG4751@2759
Cds size387
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko03036,ko03400,ko04121,ko04516
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9133.30452.1prot_Ecto-sp8_S_contig9133.30452.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9133 3446..5654 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145262.8347614-UTR-Ecto-sp8_S_contig9133:3416..34451681145262.8347614-UTR-Ecto-sp8_S_contig9133:3416..3445Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9133 3417..3445 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145262.859561-CDS-Ecto-sp8_S_contig9133:3445..34901681145262.859561-CDS-Ecto-sp8_S_contig9133:3445..3490Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9133 3446..3490 +
1681145262.8745792-CDS-Ecto-sp8_S_contig9133:3733..37871681145262.8745792-CDS-Ecto-sp8_S_contig9133:3733..3787Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9133 3734..3787 +
1681145262.885269-CDS-Ecto-sp8_S_contig9133:4618..47021681145262.885269-CDS-Ecto-sp8_S_contig9133:4618..4702Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9133 4619..4702 +
1681145262.898643-CDS-Ecto-sp8_S_contig9133:5022..50961681145262.898643-CDS-Ecto-sp8_S_contig9133:5022..5096Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9133 5023..5096 +
1681145262.9105606-CDS-Ecto-sp8_S_contig9133:5524..56541681145262.9105606-CDS-Ecto-sp8_S_contig9133:5524..5654Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9133 5525..5654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9133.30452.1

>prot_Ecto-sp8_S_contig9133.30452.1 ID=prot_Ecto-sp8_S_contig9133.30452.1|Name=mRNA_Ecto-sp8_S_contig9133.30452.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=129bp
MQRIMETEAAGMEEEVMRELEETLPDSFRRMREAENPSSFFEALPAEGQK
EVTDWRERHQQVMEGLRQKAMDERLRGMDGIDRRVRQLITLRVACVCPHT
DTTPTPNKRRKGDGAPSAAAAAAAAGRKA
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mRNA from alignment at Ecto-sp8_S_contig9133:3417..5654+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9133.30452.1 ID=mRNA_Ecto-sp8_S_contig9133.30452.1|Name=mRNA_Ecto-sp8_S_contig9133.30452.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2238bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9133:3417..5654+ (Ectocarpus species8 EcLAC_412)
AGGGCGAACGGAGTCTGCACTTGGCAAGGATGCAGCGAATCATGGAGACG
GAGGCTGCTGGGATGGAGGAGGAGGTGCACAACCCTATGTTTTGTACAAT
ACGTGCTTCTGGAAAATAGAGAGGTTTGAAGCGGTGCAAACTCACCGTCT
GAGTCGTTTCTCGTGGTTGTGTTCAATTGGTTTGGAGCTACAGACGTAAG
ACAAAGGGTTTTTGCATCGGCGTGCGATGCGCGCGTAGGAACGGGCAAGG
CGGCGGTGGAATTGCACCGCTCTTGACGTGACCCTCTTGCTCCGTTGTGC
TTTTGGTTCCCACCCAGGTTATGCGCGAGCTCGAAGAGACGCTCCCGGAT
TCGTTTCGAAGGATGAGAGAGGTAAGGAAAAGAGCACGGCGTTAGCAAAA
AAAATAGCAATATATTTCCGCGGGAGCATGACGACGAGCCCGAAAGGAGG
CGTACGAATCGCAACGATTTTCGAAATTCACTTCGACTCGTGGTGTGGTT
GTATGGGCACAAGCGGTGCATCGCCGCATCGAGCACGGACGGGTTTCGCT
TGTTCGTCGTCGTGACAGTTTTCTAGACTGACGGAGTTTTTTTTTTTTTG
GTCGAAAAGGGAGGGAGGTCCACCACTATTTAGCTAGACTGACGGAGGGC
GTTTTTTTTTTTTTCGAAAGGGGTGGGGGGAGGAGGTTCACCACACTAGC
TACATTGACGGAGGGCATTTTTTTTTTTTTCGAAAGGGGGGAGGTTCACC
AGACTAGCTAGACTGACGGAGGGCGTTTTTTTTTTTCGAAAGGGGGGGGG
AGGTTCACCGTTGAGACATTTGCTTCGTTCTGCGAGGAGCCGGCGGTGCC
TGCCGAAGTCGACCTTGAGAGCCTTGAAGAACAAGATAGAAAACAACACC
TTTTCCTTTCGTTTTCGAGCGTGAAACTTGTTTCTGGGACAGCTGAAAAG
GCCCTTGGCCTGATGGGTTGTGAGATCCTCAATTCGAGTTCTGGTCTCGA
CCCCGTTGACTTTTTTGTGATTTTCCCGATGGTGACATACGGTGCTGGGC
GCTTTGTTCTTAGCTTGGTGAATTGTTGAATACCACACGGGCCCGTGTAT
TGGCTGCCACCAGCCTCCATCACGCTAGATTTTGTGTTTTGCGGATGACC
ACGATACGTGGTGTGATGGTACTTTGCTCTTTCCTTCTTGGGCAATTACC
AGGCGGAGAACCCGTCGTCGTTCTTCGAAGCGCTCCCCGCCGAGGGGCAG
AAGGAGGTTACGGACTGGAGGGAGCGACACCAACAGGCGCGCGTTCGTTG
AAGTGTTTTTGTCGGCATTGTGGTGTCAGCACATATTGATCATGAATTTT
TATCTTCTTCATCGGCATTCTCGTCACCTGGGTCCCAAACGTAGACGTCT
CGCGCTGTCTCCCTTTCGGCAGTCCCATCCTGCGTTGGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTTTGGTGGTGGTGGTGGTGGTGGTGGTGGTG
CTGCTGCTGCTGCTGCCACTGGTATTGTCTTGCAGCCCCGTTGATGCCCC
AATGATGCATTTTATTACGGCGACAACTACTCCCCCTTCCACCGCCCACC
CACCAGGTGATGGAAGGTCTGCGGCAGAAGGCCATGGACGAACGCCTGCG
GGGTATGGACGGTATCGATCGAAGAGTCAGGTAAATCCATCCGCTATTGT
CACTCATATCGCTCGTTTACGCTTTCGATTTCCAGTCTAACCTGGCGTCT
TTTCATTGGTCAGCCGGGCGGTCGGTCGTGGCCGATCGGTGCGAGTTTAC
AAGACCCACGAACGCAAGCGGCGGTCGCACCCACACCGTTGACTTCGGGA
AGGTTTCTTGACTCACCCGTCGAATCCGACGCCGTTCTATCGAACCTCGC
GAACGACTGTTCGATTTTCGTGACTTGCTGTTGGGATTTTTGTTCCGTCC
AGGTACCTACTCGCCACGCTGCGCGTGGCTTGCGTGCGCTCTCACACCCA
ACACCCTTTGACCACGGGAAGAGATCTCTTGACCCCTCCCTCAAATCCGA
CCCCCGTCCTAACGACCCTCGTGTGTATGACTTTCACGGCTTCTCTCGTC
CCATCCAGGCAACTCATCACGCTGCGCGTGGCGTGCGTTTGCCCCCACAC
CGACACGACTCCAACCCCGAACAAGAGGCGCAAAGGTGATGGAGCACCAT
CAGCGGCGGCGGCGGCGGCGGCGGCAGGGAGGAAGGCG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9133:3417..5654+

>mRNA_Ecto-sp8_S_contig9133.30452.1 ID=mRNA_Ecto-sp8_S_contig9133.30452.1|Name=mRNA_Ecto-sp8_S_contig9133.30452.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9133:3417..5654+ (Ectocarpus species8 EcLAC_412)
ATGCAGCGAATCATGGAGACGGAGGCTGCTGGGATGGAGGAGGAGGTTAT
GCGCGAGCTCGAAGAGACGCTCCCGGATTCGTTTCGAAGGATGAGAGAGG
CGGAGAACCCGTCGTCGTTCTTCGAAGCGCTCCCCGCCGAGGGGCAGAAG
GAGGTTACGGACTGGAGGGAGCGACACCAACAGGTGATGGAAGGTCTGCG
GCAGAAGGCCATGGACGAACGCCTGCGGGGTATGGACGGTATCGATCGAA
GAGTCAGGCAACTCATCACGCTGCGCGTGGCGTGCGTTTGCCCCCACACC
GACACGACTCCAACCCCGAACAAGAGGCGCAAAGGTGATGGAGCACCATC
AGCGGCGGCGGCGGCGGCGGCGGCAGGGAGGAAGGCG
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