mRNA_Ecto-sp8_S_contig101600.268.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig101600.268.1 vs. uniprot
Match: UPI000C78CE06 (neuronal calcium sensor 2-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C78CE06) HSP 1 Score: 112 bits (281), Expect = 2.930e-28 Identity = 82/158 (51.90%), Postives = 112/158 (70.89%), Query Frame = 1
Query: 1 LSEEHLVKIMEHTNVEKEQVEEKYRQFLTKYPKGRISRKSFQSMLSDCFPGLGSERLGQLGSHIWRIYDINEDGHIDFYEFMTVLHVMSRGSSEDNLRQIXXXXXXXXXXXXXXXXXE-------RIVLDFQLGDSEEGCLVNSVFSEMDENEDGVIS 453
L++E +V I +T +++EQVE +Y+ FL+K+P GRISRKSF M+ +C+PG +E+L + HI+R+YD N+DGHIDF EFM VL+V+S GS E+NL XXXXXXXXXXXXXXXXX ++ + + + L NS FSEMDEN+DG I+
Sbjct: 31 LTDEDIVFIARNTAMDQEQVEIRYQNFLSKHPDGRISRKSFHDMMKECYPGTDTEKLEK---HIFRMYDTNDDGHIDFREFMIVLYVLSNGSPEENLXXXXXXXXXXXXXXXXXXXXXXXXXXXFHLINEENVDQASHDVLANSAFSEMDENKDGEIT 185
BLAST of mRNA_Ecto-sp8_S_contig101600.268.1 vs. uniprot
Match: A0A7T8H3D8_CALRO (Neuronal calcium sensor 2 n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8H3D8_CALRO) HSP 1 Score: 107 bits (266), Expect = 1.270e-25 Identity = 72/159 (45.28%), Postives = 104/159 (65.41%), Query Frame = 1
Query: 1 LSEEHLVKIMEHTNVEKEQVEEKYRQFLTKYPKGRISRKSFQSMLSDCFPGLGSERLGQLGSHIWRIYDINEDGHIDFYEFMTVLHVMSRGSSEDNLRQIXXXXXXXXXXXXXXXXXERIVLDFQL--------GDSEEGCLVNSVFSEMDENEDGVIS 453
LSEE L I HT++++ QV+ Y+ FLT +PKG+I+ KSF+ M+ + +P S+ + + H++R+YD N+DG IDF EFM +L+V+S G EDNL+Q XXXXXXXXXXXXX ++IV D G E+ + VF EMD+++DG I+
Sbjct: 10 LSEEDLSYITSHTSLDRSQVDSYYKNFLTDHPKGKINLKSFKKMIEEAYPD--SKNVDKFAKHVFRMYDANDDGSIDFQEFMVILYVLSSGGPEDNLKQXXXXXXXXXXXXXXMKEMKKIVKDLSALKDPKGPKGKKEQEAMAKGVFKEMDKDDDGAIT 166
BLAST of mRNA_Ecto-sp8_S_contig101600.268.1 vs. uniprot
Match: C1BQB8_CALRO (Neuronal calcium sensor 2 n=3 Tax=Caligus TaxID=217164 RepID=C1BQB8_CALRO) HSP 1 Score: 104 bits (260), Expect = 2.750e-25 Identity = 71/159 (44.65%), Postives = 103/159 (64.78%), Query Frame = 1
Query: 1 LSEEHLVKIMEHTNVEKEQVEEKYRQFLTKYPKGRISRKSFQSMLSDCFPGLGSERLGQLGSHIWRIYDINEDGHIDFYEFMTVLHVMSRGSSEDNLRQIXXXXXXXXXXXXXXXXXERIVLDFQL--------GDSEEGCLVNSVFSEMDENEDGVIS 453
LSEE L I HT++++ QV+ Y+ FLT +PKG+I+ KSF+ M+ + +P S+ + + H++R+YD N+DG IDF EFM +L+V+S G EDNL+ XXXXXXXXXXXXX ++IV D G E+ + VF EMD+++DG I+
Sbjct: 10 LSEEDLSYITSHTSLDRSQVDSYYKNFLTDHPKGKINLKSFKKMIEEAYPD--SKNVDKFAKHVFRMYDANDDGSIDFQEFMVILYVLSSGGPEDNLKXXXXXXXXXXXXXXXMKEMKKIVKDLSALKDPKGPKGKKEQEAMAKGVFKEMDKDDDGTIT 166
BLAST of mRNA_Ecto-sp8_S_contig101600.268.1 vs. uniprot
Match: A0A553PRP0_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PRP0_TIGCA) HSP 1 Score: 99.8 bits (247), Expect = 3.920e-23 Identity = 77/159 (48.43%), Postives = 105/159 (66.04%), Query Frame = 1
Query: 1 LSEEHLVKIMEHTNVEKEQVEEKYRQFLTKYPKGRISRKSFQSMLSDCFPGLGSERLGQLGSHIWRIYDINEDGHIDFYEFMTVLHVMSRGSSEDNLRQIXXXXXXXXXXXXXXXXXERIVLD-FQLGDSEEG-------CLVNSVFSEMDENEDGVIS 453
L+E+ L I HT V +E+V+ +Y FL K+P G+ISRK F +++ C+P +++L + HI+R+YD N+DG IDF EFM VL++MS GS E+NL Q XXXXXXXXXXXXXXXX +RIV D F L E+ + + F EMD N DG ++
Sbjct: 35 LTEDDLEFIATHTAVTREEVDAQYESFLRKHPDGQISRKEFSALMRQCYPNADTDKLEK---HIFRMYDSNQDGFIDFREFMIVLYIMSSGSPEENLHQXXXXXXXXXXXXXXXXXLKRIVKDLFHLLSPEDNPEQASKSAMASMAFKEMDTNSDGKVT 190
BLAST of mRNA_Ecto-sp8_S_contig101600.268.1 vs. uniprot
Match: A0A7T8H2H2_CALRO (Neuronal calcium sensor 2 (Fragment) n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8H2H2_CALRO) HSP 1 Score: 95.9 bits (237), Expect = 3.100e-22 Identity = 46/99 (46.46%), Postives = 70/99 (70.71%), Query Frame = 1
Query: 1 LSEEHLVKIMEHTNVEKEQVEEKYRQFLTKYPKGRISRKSFQSMLSDCFPGLGSERLGQLGSHIWRIYDINEDGHIDFYEFMTVLHVMSRGSSEDNLRQ 297
LSEE L I HT++++ QV+ Y+ FLT +PKG+I+ KSF+ M+ + +P S+ + + H++R+YD N+DG IDF EFM +L+V+S G EDNL+Q
Sbjct: 10 LSEEDLSYITSHTSLDRSQVDSYYKNFLTDHPKGKINLKSFKKMIEEAYPD--SKNVDKFAKHVFRMYDANDDGSIDFQEFMVILYVLSSGGPEDNLKQ 106
BLAST of mRNA_Ecto-sp8_S_contig101600.268.1 vs. uniprot
Match: D3PFV6_LEPSM (Neuronal calcium sensor 2 n=4 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=D3PFV6_LEPSM) HSP 1 Score: 94.4 bits (233), Expect = 2.750e-21 Identity = 70/160 (43.75%), Postives = 104/160 (65.00%), Query Frame = 1
Query: 1 LSEEHLVKIMEHTNVEKEQVEEKYRQFLTKYPKGRISRKSFQSMLSDCFPGLGSERLGQLGSHIWRIYDINEDGHIDFYEFMTVLHVMSRGSSEDNLRQIXXXXXXXXXXXXXXXXXERIVLDFQL---------GDSEEGCLVNSVFSEMDENEDGVIS 453
L +E L I HT +++ QV+E + FL K+P+G+ISRK F+ M+ C+P ++ + +L HI+R+YD N DG IDF+EFM +L+V+S G+ E+NL QIXXXXXXXXXXXX +R++ D D+++G L ++F EMD + DG +S
Sbjct: 10 LRDEDLNYISHHTALDRAQVDEYHSNFLAKHPEGQISRKYFKCMILGCYPD--TKHVDKLEKHIFRMYDTNGDGLIDFHEFMIILYVLSSGTPEENLNQIXXXXXXXXXXXXSLREMKRVIKDLYTLFLTKEHSKVDAQKG-LAKNIFEEMDTDLDGRVS 166
BLAST of mRNA_Ecto-sp8_S_contig101600.268.1 vs. uniprot
Match: UPI000C78995B (neuronal calcium sensor 2-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C78995B) HSP 1 Score: 89.0 bits (219), Expect = 3.560e-19 Identity = 68/147 (46.26%), Postives = 96/147 (65.31%), Query Frame = 1
Query: 34 HTN-VEKEQVEEKYRQFLTKYPKGRISRKSFQSMLSDCFPGLGS--ERLGQLGSHIWRIYDINEDGHIDFYEFMTVLHVMSRGSSEDNLRQIXXXXXXXXXXXXXXXXXERIVLDFQ----LGDSEEGCLVNSVFSEMDENEDGVIS 453
HT+ + +EQ++ K+ F +PKG+I RKSF+ ML++ F + E + ++ HI+RIYD N DGHIDF EFM V HV+S G+ ED LR+ XXXXXXXXXXXX R+V D + +S E + +S F+EMD + DGV++
Sbjct: 25 HTSGLSEEQIKVKFDAFTADHPKGKIDRKSFRKMLTEAFLHSKNPMEDVEKMEKHIFRIYDTNNDGHIDFIEFMVVFHVLSEGTPEDVLRKXXXXXXXXXXXXXSKKEMLRLVKDLHGLSTVSESRES-IADSAFAEMDNDGDGVVT 170
BLAST of mRNA_Ecto-sp8_S_contig101600.268.1 vs. uniprot
Match: V9P2U7_9MAXI (Neuronal calcium sensor 2 n=1 Tax=Pseudodiaptomus annandalei TaxID=298510 RepID=V9P2U7_9MAXI) HSP 1 Score: 83.6 bits (205), Expect = 3.960e-17 Identity = 61/159 (38.36%), Postives = 96/159 (60.38%), Query Frame = 1
Query: 1 LSEEHLVKIMEHTNVEKEQVEEKYRQFLTKYPKGRISRKSFQSMLSDCFPGLGSERLGQLGSHIWRIYDINEDGHIDFYEFMTVLHVMSRGSSEDNLRQIXXXXXXXXXXXXXXXXXERIVLDFQLG--------DSEEGCLVNSVFSEMDENEDGVIS 453
L +E + +++ + +++EQV E + F+ ++P G++ K F+ M+S P + ++ + H++RIYD N DG IDF EFM V ++MS GS ++ L + XXXXXXXXXXXX +RI+ D G ++ E + S F+EMD NEDG +S
Sbjct: 10 LRDEDVKALVQSSGLDEEQVREHFNAFVAEHPNGKMKMKDFREMMSKALPKKDASKMEK---HVFRIYDSNNDGSIDFQEFMVVFYIMSDGSPDEVLEKXXXXXXXXXXXXXSKKELKRIIKDILSGLIKTDNPEEASEKLITTSAFAEMDTNEDGKVS 165
BLAST of mRNA_Ecto-sp8_S_contig101600.268.1 vs. uniprot
Match: A0A7T8H2P0_CALRO (Neuronal calcium sensor 2 (Fragment) n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8H2P0_CALRO) HSP 1 Score: 81.6 bits (200), Expect = 1.050e-16 Identity = 63/143 (44.06%), Postives = 90/143 (62.94%), Query Frame = 1
Query: 25 IMEHTNVEKEQVEEKYRQFLTKYPKGRISRKSFQSMLSDCFPGLGSERLGQLGSHIWRIYDINEDGHIDFYEFMTVLHVMSRGSSEDNLRQIXXXXXXXXXXXXXXXXXERIVLDFQLGDSEEGCLVNSVFSEMDENEDGVIS 453
I HT++++ QV+ Y+ FLT +PKG+I+ LSD S+ + + H++R+YD N+DG IDF EFM +L+V+S G EDNL XXXXXXXXXXXXXX ++I G E+ + VF EMD+++DG I+
Sbjct: 5 ITSHTSLDRSQVDSYYKNFLTDHPKGKINLN-----LSD------SKNVDKFAKHVFRMYDANDDGSIDFQEFMVILYVLSSGGPEDNLXXXXXXXXXXXXXXXXXKEMKKI------GKKEQEAMAKGVFKEMDKDDDGTIT 130
BLAST of mRNA_Ecto-sp8_S_contig101600.268.1 vs. uniprot
Match: UPI001F03740D (neurocalcin-delta B-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03740D) HSP 1 Score: 68.2 bits (165), Expect = 2.660e-11 Identity = 49/153 (32.03%), Postives = 78/153 (50.98%), Query Frame = 1
Query: 16 LVKIMEHTNVEKEQVEEKYRQFLTKYPKGRISRKSFQSMLSDCFPGLGSERLGQLGSHIWRIYDINEDGHIDFYEFMTVLHVMSRGSSEDNLRQIXXXXXXXXXXXXXXXXXERIV--LDFQLGDSEEGCLVNS-----VFSEMDENEDGVIS 453
L+ ++ T E++++++ Y++F+ +YP G IS+ F+SM F G R + HI+R +D N DG IDF EFM L V +RGS+E+ L E IV +D L + + ++ VF D+N+DGV+S
Sbjct: 13 LIHLLNRTKFEEKELKKWYQKFIREYPDGFISKSQFESMYQSFF-SKGDAR--EFADHIFRTFDGNSDGKIDFREFMVSLSVTTRGSAEEKLEWAFKVYDVDGNGFITKKEMELIVRSVDKVLSQNRKAYNLSDIRTDRVFKNFDKNQDGVLS 162 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101600.268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig101600.268.1 >prot_Ecto-sp8_S_contig101600.268.1 ID=prot_Ecto-sp8_S_contig101600.268.1|Name=mRNA_Ecto-sp8_S_contig101600.268.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=142bp MEHTNVEKEQVEEKYRQFLTKYPKGRISRKSFQSMLSDCFPGLGSERLGQback to top mRNA from alignment at Ecto-sp8_S_contig101600:86..538+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig101600.268.1 ID=mRNA_Ecto-sp8_S_contig101600.268.1|Name=mRNA_Ecto-sp8_S_contig101600.268.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=453bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101600:86..538+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101600:86..538+ >mRNA_Ecto-sp8_S_contig101600.268.1 ID=mRNA_Ecto-sp8_S_contig101600.268.1|Name=mRNA_Ecto-sp8_S_contig101600.268.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101600:86..538+ (Ectocarpus species8 EcLAC_412)back to top |