mRNA_Ecto-sp8_S_contig101452.237.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig101452.237.1 vs. uniprot
Match: A0A0A0HED2_9RHOB (Transcriptional regulator, TetR family n=9 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A0A0HED2_9RHOB) HSP 1 Score: 254 bits (649), Expect = 3.160e-84 Identity = 129/137 (94.16%), Postives = 133/137 (97.08%), Query Frame = 1
Query: 1 KLSEEICRPLSSLGDARGALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLPEAGEICMDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSISGVIMPRLLAVDQPVDASEHSKRAVDAFLGVYGRRNDL 411
+LSEEICRPLS+LG+A+ ALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLPEAGEI MDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSIS VIMPRLLAVDQPVDASEHSKRAVDAFL VYGRRNDL
Sbjct: 78 RLSEEICRPLSNLGNAQDALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLPEAGEIYMDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSISDVIMPRLLAVDQPVDASEHSKRAVDAFLAVYGRRNDL 214
BLAST of mRNA_Ecto-sp8_S_contig101452.237.1 vs. uniprot
Match: A3W6N6_9RHOB (Transcriptional regulator, TetR family protein n=2 Tax=Roseovarius sp. 217 TaxID=314264 RepID=A3W6N6_9RHOB) HSP 1 Score: 240 bits (613), Expect = 9.230e-79 Identity = 121/137 (88.32%), Postives = 128/137 (93.43%), Query Frame = 1
Query: 1 KLSEEICRPLSSLGDARGALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLPEAGEICMDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSISGVIMPRLLAVDQPVDASEHSKRAVDAFLGVYGRRNDL 411
+LSEEICRPLS+ GDARG LEELSRRMIGLVMD+ YIRLLRVCIGAV VLPEAGEI MDAGPTRAI HVAQIL+DLHET+SL+VEN+QNAASQFIHLSISGVIMPRLLAVDQPVDA EHSKRAVDAFLGVYG RN L
Sbjct: 77 RLSEEICRPLSNAGDARGVLEELSRRMIGLVMDDDYIRLLRVCIGAVSVLPEAGEIYMDAGPTRAIKHVAQILRDLHETRSLSVENIQNAASQFIHLSISGVIMPRLLAVDQPVDAPEHSKRAVDAFLGVYGWRNGL 213
BLAST of mRNA_Ecto-sp8_S_contig101452.237.1 vs. uniprot
Match: A0A1I7ECY5_9RHOB (Transcriptional regulator, TetR family n=3 Tax=Rhodobacterales TaxID=204455 RepID=A0A1I7ECY5_9RHOB) HSP 1 Score: 213 bits (541), Expect = 5.080e-68 Identity = 106/134 (79.10%), Postives = 121/134 (90.30%), Query Frame = 1
Query: 4 LSEEICRPLSSLGDARGALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLPEAGEICMDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSISGVIMPRLLAVDQPVDASEHSKRAVDAFLGVYGRRN 405
LSEEICRPL+S DAR LEELSRRMIGLVMD+ Y+RLLRVCIGAV VLPEAGEI M+AGP RAI VAQIL++LHETKSL+V+NVQNA++QFIHLS+SGVIMP+LLAVDQP+D SEHS+RAVDAFLG YG R+
Sbjct: 63 LSEEICRPLTSQNDARSMLEELSRRMIGLVMDDDYMRLLRVCIGAVSVLPEAGEIYMNAGPRRAIRIVAQILRNLHETKSLDVKNVQNASAQFIHLSVSGVIMPQLLAVDQPIDVSEHSRRAVDAFLGAYGGRD 196
BLAST of mRNA_Ecto-sp8_S_contig101452.237.1 vs. uniprot
Match: A3TZX7_PSEBH (Transcriptional regulator, TetR family protein n=2 Tax=Pseudooceanicola batsensis TaxID=314255 RepID=A3TZX7_PSEBH) HSP 1 Score: 210 bits (535), Expect = 4.580e-67 Identity = 106/137 (77.37%), Postives = 120/137 (87.59%), Query Frame = 1
Query: 1 KLSEEICRPLSSLGDARGALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLPEAGEICMDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSISGVIMPRLLAVDQPVDASEHSKRAVDAFLGVYGRRNDL 411
+LSEEIC+PLSS DAR LEELSRRMIGLVMD+ YIRLLR+C+GA VLPEAGEI MDAGP RA VAQIL+ LH+ KSLNV++VQ+AASQFIHL+ISGV++PRLLAVD+PVDASEHSKRAVDAFL VY RNDL
Sbjct: 65 RLSEEICQPLSSRDDARAVLEELSRRMIGLVMDDDYIRLLRICLGAASVLPEAGEIYMDAGPRRATRIVAQILERLHKAKSLNVQDVQSAASQFIHLAISGVVIPRLLAVDEPVDASEHSKRAVDAFLRVYAGRNDL 201
BLAST of mRNA_Ecto-sp8_S_contig101452.237.1 vs. uniprot
Match: A0A1I1N2H7_9RHOB (Transcriptional regulator, TetR family n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1I1N2H7_9RHOB) HSP 1 Score: 207 bits (526), Expect = 9.710e-66 Identity = 106/136 (77.94%), Postives = 116/136 (85.29%), Query Frame = 1
Query: 4 LSEEICRPLSSLGDARGALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLPEAGEICMDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSISGVIMPRLLAVDQPVDASEHSKRAVDAFLGVYGRRNDL 411
LS EICRPLSS DAR LEELS+RMIGLVMD+ YIRLLRVCIGA VLPEAGEI M +GPTRAI VAQIL+ LHE KS NV+++Q AASQFIHLSI+GVIMPRLLAVDQPVDASEHSKRA DAFL +Y RN+L
Sbjct: 63 LSMEICRPLSSQNDARSVLEELSQRMIGLVMDDDYIRLLRVCIGAASVLPEAGEIYMGSGPTRAIRTVAQILERLHEAKSQNVQDIQGAASQFIHLSIAGVIMPRLLAVDQPVDASEHSKRAADAFLRIYAGRNNL 198
BLAST of mRNA_Ecto-sp8_S_contig101452.237.1 vs. uniprot
Match: A0A1T1ZXT2_9RHOB (TetR family transcriptional regulator n=1 Tax=Thioclava sp. F28-4 TaxID=1915315 RepID=A0A1T1ZXT2_9RHOB) HSP 1 Score: 184 bits (467), Expect = 9.270e-57 Identity = 95/131 (72.52%), Postives = 106/131 (80.92%), Query Frame = 1
Query: 1 KLSEEICRPLSSLGDARGALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLPEAGEICMDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSISGVIMPRLLAVDQPVDASEHSKRAVDAFLGVY 393
+LS EI RPLSS + R LEELSRRMIGLVMD YIRLLR CIGAV VLPEAGEI M+AGP RA V Q+L+ LHE SL V + Q+AASQFIHLS+SGVIMPR+LAVDQP+DA EHSKRAVDAFL +Y
Sbjct: 62 RLSAEISRPLSSGDEPRVVLEELSRRMIGLVMDNDYIRLLRACIGAVAVLPEAGEIYMEAGPRRATRIVGQVLQGLHEAGSLKVHDAQSAASQFIHLSVSGVIMPRMLAVDQPIDAVEHSKRAVDAFLEIY 192
BLAST of mRNA_Ecto-sp8_S_contig101452.237.1 vs. uniprot
Match: UPI001E3CD266 (TetR/AcrR family transcriptional regulator n=1 Tax=Seohaeicola saemankumensis TaxID=481181 RepID=UPI001E3CD266) HSP 1 Score: 169 bits (428), Expect = 7.250e-51 Identity = 87/135 (64.44%), Postives = 104/135 (77.04%), Query Frame = 1
Query: 1 KLSEEICRPLSSLGDARGALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLPEAGEICMDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSISGVIMPRLLAVDQPVDASEHSKRAVDAFLGVYGRRN 405
+LS EI PLS+ + R LEELS RMI LV+D+ YIRLLR CIGAV VLPEAGEI M+AGP RA V Q+L+ LH SL V +VQ+AA QFIHLS+SG+IMPRLL+VD P+DASE SKRAV+AFL +Y R+
Sbjct: 62 RLSAEISLPLSNDDEPRAVLEELSGRMIRLVLDDDYIRLLRTCIGAVAVLPEAGEIYMEAGPRRATRIVGQVLQGLHNAGSLKVHDVQSAAGQFIHLSVSGIIMPRLLSVDPPIDASEQSKRAVNAFLEIYSPRH 196
BLAST of mRNA_Ecto-sp8_S_contig101452.237.1 vs. uniprot
Match: A0A0J5Q6D5_9RHOB (Transcriptional regulator, TetR family n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A0J5Q6D5_9RHOB) HSP 1 Score: 165 bits (417), Expect = 3.590e-49 Identity = 86/135 (63.70%), Postives = 102/135 (75.56%), Query Frame = 1
Query: 1 KLSEEICRPLSSLGDARGALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLPEAGEICMDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSISGVIMPRLLAVDQPVDASEHSKRAVDAFLGVYGRRN 405
+LS EI RPLSS D R LEELSRRMI LVMD+ YIRLLR CIGAV VLPEAG+I M+AGP RA VA+IL+ + + SL+V++ AA QFIHLS+SGVIMPRLLA++ +DASEHS +A D FL VY N
Sbjct: 62 RLSAEISRPLSSREDPRSVLEELSRRMIDLVMDDDYIRLLRSCIGAVSVLPEAGDIYMEAGPKRATGIVARILQGMRDAGSLHVQDCHTAAGQFIHLSLSGVIMPRLLALEPRIDASEHSTKATDTFLDVYSAGN 196
BLAST of mRNA_Ecto-sp8_S_contig101452.237.1 vs. uniprot
Match: A0A073IVZ5_9RHOB (TetR family transcriptional regulator n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A073IVZ5_9RHOB) HSP 1 Score: 163 bits (412), Expect = 1.940e-48 Identity = 83/135 (61.48%), Postives = 101/135 (74.81%), Query Frame = 1
Query: 1 KLSEEICRPLSSLGDARGALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLPEAGEICMDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSISGVIMPRLLAVDQPVDASEHSKRAVDAFLGVYGRRN 405
+LS EI RPLS R LE+LSRRMI LV+D+ YIRLLR C AV VLPEAG+I M+AGP RA V Q+L+ L E S+ +++VQ+ ASQFIHLSISG+IMPRLLAV QP+DA H++RAVD FLG+Y N
Sbjct: 62 RLSVEISRPLSRNDSPRAVLEQLSRRMIRLVLDDDYIRLLRTCTRAVSVLPEAGQIYMEAGPRRATRIVGQVLRVLQEAGSVKMQDVQSTASQFIHLSISGIIMPRLLAVGQPIDAPAHAERAVDVFLGIYSAGN 196
BLAST of mRNA_Ecto-sp8_S_contig101452.237.1 vs. uniprot
Match: A0A259M841_9RHOB (TetR family transcriptional regulator n=7 Tax=Rhodobacterales TaxID=204455 RepID=A0A259M841_9RHOB) HSP 1 Score: 163 bits (412), Expect = 2.390e-48 Identity = 83/131 (63.36%), Postives = 98/131 (74.81%), Query Frame = 1
Query: 1 KLSEEICRPLSSLGDARGALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLPEAGEICMDAGPTRAITHVAQILKDLHETKSLNVENVQNAASQFIHLSISGVIMPRLLAVDQPVDASEHSKRAVDAFLGVY 393
+LS I RPL D R LEELSRR+I LV+D+ YIRLLR CIGAV VLPEAGEI M AGP A HV Q+L LH+ K+LNVE+ +AA Q IHLS+SGVIMPRLL +D +D S+H+KRAVDAFL +Y
Sbjct: 65 RLSAAISRPLPKDLDPRAILEELSRRLINLVLDDDYIRLLRACIGAVSVLPEAGEIYMKAGPKLATRHVGQVLHALHDAKALNVEDHLSAAGQLIHLSVSGVIMPRLLTLDPKIDVSDHAKRAVDAFLKIY 195 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101452.237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig101452.237.1 >prot_Ecto-sp8_S_contig101452.237.1 ID=prot_Ecto-sp8_S_contig101452.237.1|Name=mRNA_Ecto-sp8_S_contig101452.237.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=138bp KLSEEICRPLSSLGDARGALEELSRRMIGLVMDEGYIRLLRVCIGAVPVLback to top mRNA from alignment at Ecto-sp8_S_contig101452:126..539- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig101452.237.1 ID=mRNA_Ecto-sp8_S_contig101452.237.1|Name=mRNA_Ecto-sp8_S_contig101452.237.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=414bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101452:126..539- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101452:126..539- >mRNA_Ecto-sp8_S_contig101452.237.1 ID=mRNA_Ecto-sp8_S_contig101452.237.1|Name=mRNA_Ecto-sp8_S_contig101452.237.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101452:126..539- (Ectocarpus species8 EcLAC_412)back to top |