mRNA_Ecto-sp8_S_contig10144.235.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10144.235.1
Unique NamemRNA_Ecto-sp8_S_contig10144.235.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10144.235.1 vs. uniprot
Match: D8LGR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGR1_ECTSI)

HSP 1 Score: 559 bits (1441), Expect = 4.130e-195
Identity = 321/350 (91.71%), Postives = 326/350 (93.14%), Query Frame = 1 
Query:  217 MPVVLSSRWGIEPVAVDTACTDDGPLPLPFETSTTTAAGEAATQQD-CCDDRAIGEDGDEEDMELTGRTLWDCTQVLWDLVADPRKDNTFTVRDKRVIELGGGTGALSVGLARSEAASVTCTDLPCHLALIRSTVVTNAQTTASCRRGVLGSDVGGXXXXXXXXXXXVVAGT-----TSRGSDLPAATEVPAAAAREARVRVVALRWGEEEDIANARALPFNNHSGEGRRCSXXXXXXXXXXXXXSAFDVIVLSEVLYWPALDLLQEDTREPLRRTLVGLSKPGTKVILIYKERWPEREAEFLRSCEASFEVRDIPADLLALPTASTEDPGSAAIRAVVMVRLPLRRDEQ 1248
            MPVVLSSRWGIEPV V TACTDDGPLPLPFETSTTTAAGEAATQQD CCDDRAIGEDGDEEDMELTGRTLWDCTQVLWDLVADPR+ NTFTVRDKRVIELGGGTGALSVGLARSEAASVTCTDLPCHLALI+STVV NA+TTASCRRGVLGSDVGG  XXXXXXXXX          TSRGSD PAATEVPAAAAREARVRVVALRWGEEEDIANARALPFNNHSGE     XXXXXXXXXXXXXSAFDVIVLSEVLYWPALDLLQEDTREPLRRTLVGLSKPGTKVILIYKERWPEREAEFLR+CEASFEV DIPADLLALPTASTEDPGSAAIRAVVMVRLPL+RDEQ
Sbjct:    1 MPVVLSSRWGIEPVTVGTACTDDGPLPLPFETSTTTAAGEAATQQDYCCDDRAIGEDGDEEDMELTGRTLWDCTQVLWDLVADPREGNTFTVRDKRVIELGGGTGALSVGLARSEAASVTCTDLPCHLALIQSTVVANARTTASCRRGVLGSDVGGGGXXXXXXXXXXXXXXXXXXXTSRGSDPPAATEVPAAAAREARVRVVALRWGEEEDIANARALPFNNHSGERXXXXXXXXXXXXXXXXXSAFDVIVLSEVLYWPALDLLQEDTREPLRRTLVGLSKPGTKVILIYKERWPEREAEFLRTCEASFEVGDIPADLLALPTASTEDPGSAAIRAVVMVRLPLQRDEQ 350
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BLAST of mRNA_Ecto-sp8_S_contig10144.235.1 vs. uniprot
Match: A0A6H5J7D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7D3_9PHAE)

HSP 1 Score: 543 bits (1398), Expect = 9.570e-189
Identity = 299/345 (86.67%), Postives = 306/345 (88.70%), Query Frame = 1 
Query:  217 MPVVLSSRWGIEPVAVDTACTDDGPLPLPFETSTTTAAGEAATQQD-CCDDRAIGEDGDEEDMELTGRTLWDCTQVLWDLVADPRKDNTFTVRDKRVIELGGGTGALSVGLARSEAASVTCTDLPCHLALIRSTVVTNAQTTASCRRGVLGSDVGGXXXXXXXXXXXVVAGTTSRGSDLPAATEVPAAAAREARVRVVALRWGEEEDIANARALPFNNHSGEGRRCSXXXXXXXXXXXXXSAFDVIVLSEVLYWPALDLLQEDTREPLRRTLVGLSKPGTKVILIYKERWPEREAEFLRSCEASFEVRDIPADLLALPTASTEDPGSAAIRAVVMVRLPLRRDEQ 1248
            MPVVLSSRWGIEPVAV TACTDDGPLPLPFETS TTAAGE  T+QD CCDDR IGEDGDEEDMELTGRTLWDCTQVLWDLVADPRKDN FTVRDKRVIELGGGTGALSVGLARS AASVTCTDLPCHL  IRSTV+ NA+T+ SCRRGV  SDV             VVAGT +RGSDLPAAT VP AA REARV VVALRWGE EDIANARA P NNHSGEGRRCSXXXXXXXXXXX   AFDVIVLSEVLYWPALDLLQEDTREPLRRTLVGLSKPGTKVILIYKERWPEREAEFLRSCEASFEV DIPADLLA+PTASTEDPGSAAIRAVVMVRLPL+RDEQ
Sbjct:    1 MPVVLSSRWGIEPVAVGTACTDDGPLPLPFETSATTAAGEVGTRQDYCCDDRGIGEDGDEEDMELTGRTLWDCTQVLWDLVADPRKDNMFTVRDKRVIELGGGTGALSVGLARSGAASVTCTDLPCHLVRIRSTVLANARTSTSCRRGVPASDV-----DVGGDCGGVVAGTVNRGSDLPAATGVPTAATREARVCVVALRWGEAEDIANARASPCNNHSGEGRRCSXXXXXXXXXXXESWAFDVIVLSEVLYWPALDLLQEDTREPLRRTLVGLSKPGTKVILIYKERWPEREAEFLRSCEASFEVGDIPADLLAMPTASTEDPGSAAIRAVVMVRLPLQRDEQ 340
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BLAST of mRNA_Ecto-sp8_S_contig10144.235.1 vs. uniprot
Match: A0A7S2RJW5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJW5_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.940e-8
Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:  403 ELTGRTLWDCTQVLWDLVADPRKD-----NTFTVRD----KRVIELGGGTGALSVGLARSEAA-SVTCTDLPCHLALIRSTVVTNAQTTASCRR 654
            ++TG  +W+C+ VLW+++ D R +      + T+R     KR+IELG GTG LSV LA +  A  V  TDLPCH+  IR+ +  NA+  +  RR
Sbjct:  363 DITGTVVWECSSVLWNMLEDSRMEVNGGAASKTLRGLTEGKRIIELGAGTGLLSVALASAGGAREVLATDLPCHMPQIRANLALNAKRCSDRRR 456
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BLAST of mRNA_Ecto-sp8_S_contig10144.235.1 vs. uniprot
Match: A0A5J4YW68_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YW68_PORPP)

HSP 1 Score: 61.2 bits (147), Expect = 1.440e-6
Identity = 67/239 (28.03%), Postives = 89/239 (37.24%), Query Frame = 1 
Query:  421 LWDCTQVLWDLVADPRKDNTFTVRDKRVIELGGGTGALSVGLARSEAASVTCTDLPCHLALIRSTVVTNAQTTASCRRGVLGSDVGGXXXXXXXXXXXVVAGTTSRGSDLPAATEVP------AAAAREARVRVVALRWGEEEDIANARALPFNNHSGEGRRCSXXXXXXXXXXXXXSAFDVIVLSEVLYWPALDLLQEDTREPLRRTLVGLSKPGT--KVILIYKERWPEREAEFLRS 1113
            +WD    L + V + R      VR + V+ELG GTG +S+ LA      V CTD    L LIR+ V  N  +  + +R V                          G +L A++  P       A +   +V + AL W  E       AL    H                       FD +V  E LYWP L +L  D  + LR  L+ L   G     IL +  R P REA F  S
Sbjct:   39 VWDANWALAE-VLEQRVLRAAAVRQRCVLELGAGTGVMSIALAE-RGCLVLCTDQTHVLPLIRANVARNGYSPDAAQRTV--------------------------GDELAASSSEPLLFVKHGADSENKKVVIGALDWN-ERSYGALDALRTALHG----------------TANAIPFDAVVCGETLYWPGLSILDPDPLDGLRELLLFLLCTGRARSAILSFVSRNPSREARFFNS 232
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10144.235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LGR1_ECTSI4.130e-19591.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7D3_9PHAE9.570e-18986.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2RJW5_9STRA1.940e-841.49Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A5J4YW68_PORPP1.440e-628.03Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10144contigEcto-sp8_S_contig10144:427..3399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1778
Hectar predicted targeting categoryother localisation
Exons3
Cds size1035
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143112.0026305-UTR-Ecto-sp8_S_contig10144:426..6421681143112.0026305-UTR-Ecto-sp8_S_contig10144:426..642Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10144 427..642 +
1681143112.0445225-UTR-Ecto-sp8_S_contig10144:2872..33991681143112.0445225-UTR-Ecto-sp8_S_contig10144:2872..3399Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10144 2873..3399 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143112.0147564-CDS-Ecto-sp8_S_contig10144:642..9241681143112.0147564-CDS-Ecto-sp8_S_contig10144:642..924Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10144 643..924 +
1681143112.0248168-CDS-Ecto-sp8_S_contig10144:1371..19521681143112.0248168-CDS-Ecto-sp8_S_contig10144:1371..1952Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10144 1372..1952 +
1681143112.034838-CDS-Ecto-sp8_S_contig10144:2700..28721681143112.034838-CDS-Ecto-sp8_S_contig10144:2700..2872Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10144 2701..2872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10144.235.1prot_Ecto-sp8_S_contig10144.235.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10144 643..2872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10144.235.1

>prot_Ecto-sp8_S_contig10144.235.1 ID=prot_Ecto-sp8_S_contig10144.235.1|Name=mRNA_Ecto-sp8_S_contig10144.235.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=345bp
MPVVLSSRWGIEPVAVDTACTDDGPLPLPFETSTTTAAGEAATQQDCCDD
RAIGEDGDEEDMELTGRTLWDCTQVLWDLVADPRKDNTFTVRDKRVIELG
GGTGALSVGLARSEAASVTCTDLPCHLALIRSTVVTNAQTTASCRRGVLG
SDVGGGGGSGGGDCGGVVAGTTSRGSDLPAATEVPAAAAREARVRVVALR
WGEEEDIANARALPFNNHSGEGRRCSSSSGGGGASDDESSAFDVIVLSEV
LYWPALDLLQEDTREPLRRTLVGLSKPGTKVILIYKERWPEREAEFLRSC
EASFEVRDIPADLLALPTASTEDPGSAAIRAVVMVRLPLRRDEQ*
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mRNA from alignment at Ecto-sp8_S_contig10144:427..3399+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10144.235.1 ID=mRNA_Ecto-sp8_S_contig10144.235.1|Name=mRNA_Ecto-sp8_S_contig10144.235.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2973bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10144:427..3399+ (Ectocarpus species8 EcLAC_412)
TGGCATCTTCGTACAGCAGCCAGAAAGGCACTCGTGCTACAAGTATAGCT
TACTTGTCTTATTCACATCCTCTGCCAATCCCTGGTGACTCTTGGACGCC
GAGGGATCGGGCACAAGCGCAGCACATCCAAGCCGAGGGATCGGACACAA
GCGCAGCACACCCATCCCTCGTTCTCCGGAAGTGCTGGACGTTGATCACC
CACACGGGTCGCGAGTATGCCAGTGGTGCTGTCGTCTCGCTGGGGGATAG
AACCGGTGGCTGTTGACACCGCCTGCACCGACGATGGTCCTTTGCCGCTT
CCCTTCGAAACGTCCACAACAACGGCAGCAGGAGAGGCGGCGACACAGCA
AGATTGCTGTGATGACCGTGCCATTGGTGAGGACGGAGACGAAGAAGACA
TGGAGCTCACCGGCAGGACGCTGTGGGACTGTACCCAAGTGCTGTGGGAT
TTAGTCGCCGACCCCCGCAAGGACAACACGTTCACGGTCAGAGACAAGGT
ACATGACGTTTGCGTGCTATGCGTATGTAGACTTTGTAGGCATGTACAAC
AACCATTTGGACAACATGCTCACGCTGCTGTTGCCGATTACCGTCGACTA
CCGAGCTCACACCGCTCTTCATGACAGCAGTCATGCACCCGTTTCGTGTC
TTCTCAATCTCCACAAAGATGTGGCAATACACCGTGTGAGCTGCCGGGTG
GCTGGTAAACGTCGGATTGCGTTTGCGTGGAATCGGTGGAGTTTTCCTGG
ATGTAAGTCATACTGCCACAAATGTCCCAAAGCACTGCTGTCCCACGGAT
GCAGACTACTTCGTTGCCTTCTCCCTCAAGCGACTCACAACTGTGAAATA
TCTCTCAACTCGGAAAACATCAAGAAGTGCCTTGACCGTGCGCTATTGGG
TGCGTGTGTTTTTTTGTCTGTTGTCTCTTGTGCGTGGGGCGCCAGCGCGT
GATCGAGCTCGGCGGAGGCACGGGAGCCCTGTCCGTGGGCCTTGCACGGT
CTGAGGCTGCGTCGGTTACTTGCACGGACCTCCCGTGCCATCTAGCCCTA
ATACGGTCGACAGTGGTCACCAACGCTCAAACGACCGCCAGCTGTCGCCG
AGGTGTCCTAGGCAGTGACGTTGGTGGCGGTGGTGGTAGCGGCGGTGGAG
ACTGTGGCGGCGTTGTAGCGGGAACAACAAGTCGTGGAAGCGACCTACCA
GCGGCGACGGAAGTTCCGGCAGCAGCCGCGAGAGAGGCTAGAGTTCGCGT
GGTAGCCCTGCGGTGGGGTGAAGAGGAAGACATCGCGAACGCGAGGGCAT
TGCCGTTCAACAACCATAGCGGTGAAGGCAGAAGATGTAGCAGCAGCAGT
GGCGGTGGCGGCGCAAGCGATGACGAGTCTTCGGCGTTCGACGTAATCGT
GCTCAGCGAGGTGCTGTACTGGCCCGCGCTGGACCTGCTACAGGAGGACA
CGAGAGAGCCTTTGCGGCGCACTCTGGTGGGGCTCTCCAAGCCCGGGACG
AAAGTCATCCTCATCTACAAGGAGAGGTGAAAATAACACAAAAAGCACGT
GCGAGAAAGGTGTTGGTTCACCCGAACCAGGGTTAGGATGATCGAGCTGG
ACGGGGTTCATGCTTTTGGCTTGGAGGCCAAGAGCGAGTAGAGCCGAACA
GACGAATACCAACCAACCGTTCGTTTTCCTGGCTGTAGTGCTTTTAACGA
TGCCCACGCTCACAATACCATGGCCGAATGTGTACAAGCGGTTGAATTTC
ACGTTTCTCTGTGAACCCCACTTGGCCTGGCCGACCTCGTACCAACTCGC
GAGATTTAGAGACACTAAGCTGGCAGATGACCCACGAAGCATTCCCGGAC
AACCGGACGGCTCGACACGATTTCCAGCCCGCACATGCTTAGGATACCAC
GGCCATCTGCCAGGGATCGGTTTACGGGCGTGGATTTTTTCATGTATCGT
TTGTATGCACTCGTTCGGGTACCGAGGGTTGCATACGGTACGGCACCCCC
TGGATCGGTTAGCACAGCTCCACTACTCGACGACGAAGAGGATACATATC
TCAAACGATACGCTTTCGAACATATCTCAACGAGACGGTTGCAACGCCAC
TTTTTTAGGCACCGTCGCCACTCTTTCTGCTCTTAGGAGAAGTCGAGCTC
TGAAAATCAGTCCAGGGGGGCGTGGTATTCTGTGTAACCTACGGCACGCT
GCTGTTGTCACATCGGCACCACGAGGAATCAATGAACAGAGTGTAAACCG
CTTTCATGAACACATTATTCGCAGGTGGCCAGAGCGAGAGGCGGAGTTCC
TAAGGTCGTGCGAGGCGTCTTTTGAAGTTAGGGACATCCCGGCGGACCTT
TTGGCTTTGCCGACGGCCTCCACAGAGGACCCTGGTTCCGCGGCGATCAG
GGCGGTGGTTATGGTTCGCCTGCCGTTACGGAGAGATGAGCAATAAAAAA
GCGCGATATTCGCACTGTCCGGAGTTGTGTCTCGTTCCGTGTATGTGCGG
GAGGAACTCACCGTACATTGCGGAATGGACTTCGTTGGAGTGCCCCGGCA
CTTTGTTTTGGGGGACGGGTTCGTGATGATGGACGTTCAGCACCAAGGAA
CAACGGCCCACGAAATATCCCCAGTGGCGCGGGGATTTCGTGAAACTGTT
CCTGGGAGAGCACGACGACGTCGGGTGAAGTCTCAAACAGTACAACATCA
TGCGTTGAGATGTGAATGGTATTTTGGAACTCCCATTCTGCGCGACCTTG
CCACAAGTCAGTAGCAAGAGTTCAAGAAGAGCGTAGCACGTGGTGTGCAA
GAGAGTGCGGACTTCGATCCATCAGATCTTCCGTTCGTCCATCGACCGCA
ACAACTCGCAGGGATACACTCCTTCAGAGCAATGAGACAGTGGAAAAACA
ACCAAACGAAAGTCACATAGCGAGCAACCCACAGGGCAAGCTCGAAGAGC
ATACCGAAATAACACAAGATAAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10144:427..3399+

>mRNA_Ecto-sp8_S_contig10144.235.1 ID=mRNA_Ecto-sp8_S_contig10144.235.1|Name=mRNA_Ecto-sp8_S_contig10144.235.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1035bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10144:427..3399+ (Ectocarpus species8 EcLAC_412)
ATGCCAGTGGTGCTGTCGTCTCGCTGGGGGATAGAACCGGTGGCTGTTGA
CACCGCCTGCACCGACGATGGTCCTTTGCCGCTTCCCTTCGAAACGTCCA
CAACAACGGCAGCAGGAGAGGCGGCGACACAGCAAGATTGCTGTGATGAC
CGTGCCATTGGTGAGGACGGAGACGAAGAAGACATGGAGCTCACCGGCAG
GACGCTGTGGGACTGTACCCAAGTGCTGTGGGATTTAGTCGCCGACCCCC
GCAAGGACAACACGTTCACGGTCAGAGACAAGCGCGTGATCGAGCTCGGC
GGAGGCACGGGAGCCCTGTCCGTGGGCCTTGCACGGTCTGAGGCTGCGTC
GGTTACTTGCACGGACCTCCCGTGCCATCTAGCCCTAATACGGTCGACAG
TGGTCACCAACGCTCAAACGACCGCCAGCTGTCGCCGAGGTGTCCTAGGC
AGTGACGTTGGTGGCGGTGGTGGTAGCGGCGGTGGAGACTGTGGCGGCGT
TGTAGCGGGAACAACAAGTCGTGGAAGCGACCTACCAGCGGCGACGGAAG
TTCCGGCAGCAGCCGCGAGAGAGGCTAGAGTTCGCGTGGTAGCCCTGCGG
TGGGGTGAAGAGGAAGACATCGCGAACGCGAGGGCATTGCCGTTCAACAA
CCATAGCGGTGAAGGCAGAAGATGTAGCAGCAGCAGTGGCGGTGGCGGCG
CAAGCGATGACGAGTCTTCGGCGTTCGACGTAATCGTGCTCAGCGAGGTG
CTGTACTGGCCCGCGCTGGACCTGCTACAGGAGGACACGAGAGAGCCTTT
GCGGCGCACTCTGGTGGGGCTCTCCAAGCCCGGGACGAAAGTCATCCTCA
TCTACAAGGAGAGGTGGCCAGAGCGAGAGGCGGAGTTCCTAAGGTCGTGC
GAGGCGTCTTTTGAAGTTAGGGACATCCCGGCGGACCTTTTGGCTTTGCC
GACGGCCTCCACAGAGGACCCTGGTTCCGCGGCGATCAGGGCGGTGGTTA
TGGTTCGCCTGCCGTTACGGAGAGATGAGCAATAA
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