mRNA_Ecto-sp8_S_contig11514.1876.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11514.1876.1
Unique NamemRNA_Ecto-sp8_S_contig11514.1876.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11514.1876.1 vs. uniprot
Match: A0A6H5JM75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM75_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 5.340e-71
Identity = 108/118 (91.53%), Postives = 112/118 (94.92%), Query Frame = 1 
Query:   88 MSNPLTQPDIVFRLMEFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGLPQLSQSFECGLAPRSTVCRDIAALGRLDLLVSAREDHECPWDEDTSSYASENGHADVLRWAFANG 441
            M NPL QPDIVFRLMEFVGGEQY+FFAGVSRTWRDAWEGRPTTTRA TADTG+PQLSQSF+CGLAPRSTVCRDIAALGRLDLLVSARE HECPWDE+T S ASENGHADVLRWAFANG
Sbjct:    1 MPNPLMQPDIVFRLMEFVGGEQYIFFAGVSRTWRDAWEGRPTTTRAFTADTGVPQLSQSFKCGLAPRSTVCRDIAALGRLDLLVSAREQHECPWDEETCSCASENGHADVLRWAFANG 118
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BLAST of mRNA_Ecto-sp8_S_contig11514.1876.1 vs. uniprot
Match: D7G8W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W5_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 1.860e-62
Identity = 98/104 (94.23%), Postives = 102/104 (98.08%), Query Frame = 1 
Query:  130 MEFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGLPQLSQSFECGLAPRSTVCRDIAALGRLDLLVSAREDHECPWDEDTSSYASENGHADVLRWAFANG 441
            MEFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTG+PQLSQSFECGLA RSTVC+DIAALGRLDLLVSARE++ECPWDEDT SYASENGHADVLRWAFANG
Sbjct:    1 MEFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLARRSTVCQDIAALGRLDLLVSAREEYECPWDEDTCSYASENGHADVLRWAFANG 104
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BLAST of mRNA_Ecto-sp8_S_contig11514.1876.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 5.090e-24
Identity = 54/90 (60.00%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:  112 DIVFRLMEFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGLPQLSQSFECGLAPRSTVCRDIAALGRLDLLVSAREDHECPWDEDT 381
            DIV  + EFV   QYLFFA VSR WRD W  RPT T+A+TADT +PQLS SFECGL   + VC  +A LGRLDLL  AR    C W+E+T
Sbjct:    8 DIVSTVAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARA-MGCQWNENT 96
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BLAST of mRNA_Ecto-sp8_S_contig11514.1876.1 vs. uniprot
Match: A0A6H5L0K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K8_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 5.820e-23
Identity = 52/85 (61.18%), Postives = 60/85 (70.59%), Query Frame = 1 
Query:  127 LMEFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGLPQLSQSFECGLAPRSTVCRDIAALGRLDLLVSAREDHECPWDEDT 381
            L EFV   Q+LFFA VSR WRD W  RPT T+A+TADT +PQLS SFECGL   + VC  +A LGRLDLL  AR    CPW+E+T
Sbjct:   31 LAEFVDDNQHLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLQRARA-MGCPWNENT 114
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BLAST of mRNA_Ecto-sp8_S_contig11514.1876.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.030e-22
Identity = 54/90 (60.00%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:  112 DIVFRLMEFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGLPQLSQSFECGLAPRSTVCRDIAALGRLDLLVSAREDHECPWDEDT 381
            DIV  + EFV   QYLFFA VSR WRD W  RPT T+A+TADT + QLS SFECGL   + VC  +A LGRLDLL  AR    CPW+E+T
Sbjct:   10 DIVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARA-MGCPWNENT 98
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BLAST of mRNA_Ecto-sp8_S_contig11514.1876.1 vs. uniprot
Match: D7G8V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V2_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 4.630e-22
Identity = 53/92 (57.61%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:  106 QPDIVFRLMEFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGLPQLSQSFECGLAPRSTVCRDIAALGRLDLLVSAREDHECPWDEDT 381
            Q D+   L+EFV  EQ+LFFAGV R W++AW  RP TTRAVT DT + QLSQ+F+CGL+  + VC  +A LGRLDLL  AR  H C W+E T
Sbjct:    8 QSDVASCLVEFVDYEQFLFFAGVCRAWKEAWGQRPPTTRAVTEDTTVAQLSQNFQCGLSLIADVCTSVAKLGRLDLLQCARR-HGCAWNEVT 98
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BLAST of mRNA_Ecto-sp8_S_contig11514.1876.1 vs. uniprot
Match: D8LDD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD9_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 9.530e-20
Identity = 50/89 (56.18%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:   88 MSNPL-TQPDIVFRLMEFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGLPQLSQSFECGLAPRST-VCRDIAALGRLDLLVSAR 348
            M NP     D++    EFV  +Q+LFFA VSR WR AW GRPT+TRA+T DT   QL  S +CGL+P  T VC  IA+LGRLDLL +AR
Sbjct:    1 MGNPFQATADVISHASEFVHDDQFLFFASVSRAWRGAWRGRPTSTRAITPDTSPSQLRHSVDCGLSPGGTAVCTAIASLGRLDLLRAAR 89
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BLAST of mRNA_Ecto-sp8_S_contig11514.1876.1 vs. uniprot
Match: D7FH49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH49_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 6.100e-13
Identity = 51/102 (50.00%), Postives = 58/102 (56.86%), Query Frame = 1 
Query:  100 LTQPDIVFRLMEFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGLPQLSQSFECGLAPRSTV--CRDIAALGRLDLLVSAREDHECPWDEDTSSYASE 399
            +T  DIV  L +FV  +Q+LFFA VSR+WRDAW  R T T  VT  T   QL  SF CGLA R  V  C   A  G LDLL  A E   CPW    S+ A+E
Sbjct:   20 MTNMDIVHGLAQFVLDKQFLFFAAVSRSWRDAWGERATVTSWVTPHTTPFQLQYSFACGLA-RDGVDWCLTTARAGNLDLLRWATE-QGCPWTRSLSAAAAE 119
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BLAST of mRNA_Ecto-sp8_S_contig11514.1876.1 vs. uniprot
Match: A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.720e-12
Identity = 45/96 (46.88%), Postives = 58/96 (60.42%), Query Frame = 1 
Query:  112 DIVFRLMEFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGLPQLSQSFECGLA-PRSTVCRDIAALGRLDLLVSAREDHECPWDEDTSSYAS 396
            D++  ++ FV  +Q+LFFA VSR WR+AW  RP  T  VT D+ + QL  SFE GL   R  +C  IA LG L+LL SAR    C W+  T S A+
Sbjct:   62 DLLRSIVRFVAEKQFLFFAPVSRAWREAWGCRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSG-CAWNGLTFSEAA 156
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BLAST of mRNA_Ecto-sp8_S_contig11514.1876.1 vs. uniprot
Match: A0A6H5KXW1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXW1_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 4.620e-6
Identity = 42/116 (36.21%), Postives = 54/116 (46.55%), Query Frame = 1 
Query:   94 NPLTQPDIVFRLMEFVGGEQYLFFAGVSRTWRDAWE-GRPTTTRAVTADTGLPQLSQSFECGLAPRSTVCRDIAALGRLDLLVSAREDHECPWDEDTSSYASENGHADV---LRWA 429
            NPL  P I+  L+ F     +LF AGVSR+WRDAW   RP  T    A     +L  +   GL    +VC   A+ G L  L  AR    CPWD    + A+      V   ++WA
Sbjct:  726 NPLADPTILRHLISFAARNGFLFVAGVSRSWRDAWGVERPPETEVDAAVQSPSRLGWARASGLGWGPSVCARAASGGHLATLRYARA-LGCPWDWTCCALATTKALVPVSTMIQWA 840
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11514.1876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JM75_9PHAE5.340e-7191.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8W5_ECTSI1.860e-6294.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0J7_9PHAE5.090e-2460.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0K8_9PHAE5.820e-2361.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMS7_ECTSI1.030e-2260.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8V2_ECTSI4.630e-2257.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LDD9_ECTSI9.530e-2056.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FH49_ECTSI6.100e-1350.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPZ6_9PHAE3.720e-1246.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KXW1_9PHAE4.620e-636.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11514contigEcto-sp8_S_contig11514:3184..5017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score79.0
Seed ortholog evalue4.5e-12
Seed eggNOG ortholog2880.D7FJY0
Model size942
KEGG koko:K06052
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2AMK4@1,2RZCC@2759
Cds size942
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143223.0486205-CDS-Ecto-sp8_S_contig11514:3183..40491681143223.0486205-CDS-Ecto-sp8_S_contig11514:3183..4049Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11514 3184..4049 -
1681143223.0570788-CDS-Ecto-sp8_S_contig11514:4941..50171681143223.0570788-CDS-Ecto-sp8_S_contig11514:4941..5017Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11514 4942..5017 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11514.1876.1prot_Ecto-sp8_S_contig11514.1876.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11514 3184..5017 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11514.1876.1

>prot_Ecto-sp8_S_contig11514.1876.1 ID=prot_Ecto-sp8_S_contig11514.1876.1|Name=mRNA_Ecto-sp8_S_contig11514.1876.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=314bp
GTRRCEEKEEKWAKRAAQRVHIVAGGLEGMSNPLTQPDIVFRLMEFVGGE
QYLFFAGVSRTWRDAWEGRPTTTRAVTADTGLPQLSQSFECGLAPRSTVC
RDIAALGRLDLLVSAREDHECPWDEDTSSYASENGHADVLRWAFANGCPW
DADTCTMAARHGHLGVLKWARSNGCDWNSETSKLAATGGHFEVIQYLHEH
GCSLDADTCYGAARAGHLKILMYLRAHGCEWDQWTTAAAAAQGYLTILTW
SHQNGCVMDEDVNYLAAQEGRLDCIEYALANGVPLHAECLQAARESDHAN
MVNWLVANGCPEP*
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mRNA from alignment at Ecto-sp8_S_contig11514:3184..5017-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11514.1876.1 ID=mRNA_Ecto-sp8_S_contig11514.1876.1|Name=mRNA_Ecto-sp8_S_contig11514.1876.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1834bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11514:3184..5017- (Ectocarpus species8 EcLAC_412)
GGAACACGGAGGTGTGAGGAAAAGGAGGAGAAGTGGGCGAAAAGGGCAGC
GCAGCGCGTGCACATAGTGGCTGGAGGTGAGGTTTACATGGACTACAGAC
TACTGTAGGCAGTTTACAACAGCAGTATCTACCAAGGATGGTATGCCGAG
CAATATCAGCATCTGTACCTACACATGTGTTTCCCGCCCAGAAGCGATGG
TGGGAAACTATGTAGTGTATGCCAACTGGCTCTCCCATCCTTCATCCGAT
AGTGTAGTTTACACTGTAGCGCATAGTAGCAAGGTTGCCCCGTGTGAACT
TGTCTGTAGCTTCCGAGCCTGCACCGGACAGCCCCCTCCGACCCACTCGC
TCGAAAGTGGTGGTTGTCAATAGCGTGATCCCGCGGATGCATCAAGATAA
CAACACGGCAAGGGTAAGACTGATGTCATAAATAGAACGACATGAACACT
CTGTGGCCGTTCTACAACACTTTGGCCTAGCTGCACAGCAGGCGGTGGTT
GCTTCAGCCAACTCATGTTATTTGCACGCTCCTGGAGCGGTGCCTCAACA
CTGCTATTGTAGAACCTGGTATTGTTTCGTATATTTCGCAATATGAGTAC
TGCTGTTGTCCTTGCTGGTTGTCTGGGTTACGCAGACGGAGTTCTGTAGA
TCGGTCGATTTTCTCCATCGTGGGGCCCCACTTACGTACATTAGCGTCAA
AGAGGACCGCTGTGCTGATACACACCACGAAGAGCATTGGCTGCGACGCC
CCAAGTCAGAACGAGAAACGCAGACAGAGGTGACCCCTCATTCCTCATGA
AACGTAGTTCTTTTTCTGGAACAGAAGGTTACTTTTTCTCCGCATGTGAC
CGACAATGCATTGCCTTATTGGACAGCTTTTGAACTACATGTACGATGTA
CCTCACGACCATACGAAGCGTTTTTACTGACACCTCCTTGCCCCGCCCCA
TATCCCATCGGTGCGAAGGGCTAGAAGGCATGTCCAACCCCCTCACGCAA
CCGGACATCGTCTTCCGCCTGATGGAGTTCGTGGGTGGCGAGCAGTACCT
CTTCTTCGCGGGGGTGTCGCGGACCTGGAGGGACGCGTGGGAGGGACGCC
CGACGACCACACGTGCCGTCACTGCCGACACGGGGCTGCCCCAGCTGTCG
CAGAGCTTCGAGTGCGGCCTGGCGCCACGGAGCACGGTATGCCGAGACAT
CGCTGCCCTCGGAAGGCTTGACCTTCTCGTGTCCGCTCGCGAAGATCACG
AGTGTCCCTGGGATGAGGACACGAGTTCGTACGCGTCCGAAAACGGACAC
GCTGACGTGCTTCGATGGGCCTTCGCGAACGGTTGCCCGTGGGATGCTGA
TACCTGCACCATGGCTGCTCGGCACGGTCACCTGGGTGTACTCAAGTGGG
CCCGCAGCAACGGCTGCGACTGGAACAGCGAAACCTCCAAGCTAGCCGCG
ACGGGGGGGCATTTCGAAGTCATACAGTATCTGCACGAGCACGGGTGCTC
GTTGGATGCTGACACCTGCTACGGAGCAGCCCGTGCGGGACACCTGAAAA
TCTTGATGTATTTGCGTGCCCATGGTTGCGAATGGGATCAATGGACAACT
GCTGCAGCGGCTGCTCAGGGATACCTAACTATTCTTACATGGTCTCACCA
AAATGGATGCGTCATGGACGAGGATGTAAATTATTTAGCAGCCCAAGAAG
GTCGCCTAGATTGCATTGAATATGCACTGGCGAACGGTGTCCCATTGCAT
GCGGAATGCCTGCAAGCCGCCAGGGAAAGCGACCATGCTAACATGGTGAA
TTGGTTGGTAGCAAACGGCTGTCCCGAACCCTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11514:3184..5017-

>mRNA_Ecto-sp8_S_contig11514.1876.1 ID=mRNA_Ecto-sp8_S_contig11514.1876.1|Name=mRNA_Ecto-sp8_S_contig11514.1876.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=942bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11514:3184..5017- (Ectocarpus species8 EcLAC_412)
GGAACACGGAGGTGTGAGGAAAAGGAGGAGAAGTGGGCGAAAAGGGCAGC
GCAGCGCGTGCACATAGTGGCTGGAGGGCTAGAAGGCATGTCCAACCCCC
TCACGCAACCGGACATCGTCTTCCGCCTGATGGAGTTCGTGGGTGGCGAG
CAGTACCTCTTCTTCGCGGGGGTGTCGCGGACCTGGAGGGACGCGTGGGA
GGGACGCCCGACGACCACACGTGCCGTCACTGCCGACACGGGGCTGCCCC
AGCTGTCGCAGAGCTTCGAGTGCGGCCTGGCGCCACGGAGCACGGTATGC
CGAGACATCGCTGCCCTCGGAAGGCTTGACCTTCTCGTGTCCGCTCGCGA
AGATCACGAGTGTCCCTGGGATGAGGACACGAGTTCGTACGCGTCCGAAA
ACGGACACGCTGACGTGCTTCGATGGGCCTTCGCGAACGGTTGCCCGTGG
GATGCTGATACCTGCACCATGGCTGCTCGGCACGGTCACCTGGGTGTACT
CAAGTGGGCCCGCAGCAACGGCTGCGACTGGAACAGCGAAACCTCCAAGC
TAGCCGCGACGGGGGGGCATTTCGAAGTCATACAGTATCTGCACGAGCAC
GGGTGCTCGTTGGATGCTGACACCTGCTACGGAGCAGCCCGTGCGGGACA
CCTGAAAATCTTGATGTATTTGCGTGCCCATGGTTGCGAATGGGATCAAT
GGACAACTGCTGCAGCGGCTGCTCAGGGATACCTAACTATTCTTACATGG
TCTCACCAAAATGGATGCGTCATGGACGAGGATGTAAATTATTTAGCAGC
CCAAGAAGGTCGCCTAGATTGCATTGAATATGCACTGGCGAACGGTGTCC
CATTGCATGCGGAATGCCTGCAAGCCGCCAGGGAAAGCGACCATGCTAAC
ATGGTGAATTGGTTGGTAGCAAACGGCTGTCCCGAACCCTAG
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