mRNA_Ecto-sp8_S_contig11469.1834.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11469.1834.1
Unique NamemRNA_Ecto-sp8_S_contig11469.1834.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11469.1834.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 5.140e-50
Identity = 94/103 (91.26%), Postives = 96/103 (93.20%), Query Frame = -3 
Query:    2 NILAAGFHGEVSENFPLVASKEDDDAATSNFGGAGAAGVEQEMDEIDSEREVRGTTRGGGEKRHHEGGGTEPRVDRAGRGVGGYPPPYSPRAVRKHQQRHPSP 310
            NILAAGFHGEVSENFPLVASK+DDDAATS FGGA AAGVEQEMDEID EREVRGTTRGGGEKRHHE GGTEPRVDRAG  VGGYP PYSPRAVRKHQ+RHPSP
Sbjct: 3363 NILAAGFHGEVSENFPLVASKDDDDAATSIFGGADAAGVEQEMDEIDPEREVRGTTRGGGEKRHHERGGTEPRVDRAGGEVGGYPLPYSPRAVRKHQRRHPSP 3465
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BLAST of mRNA_Ecto-sp8_S_contig11469.1834.1 vs. uniprot
Match: A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 2.130e-48
Identity = 91/103 (88.35%), Postives = 95/103 (92.23%), Query Frame = -3 
Query:    2 NILAAGFHGEVSENFPLVASKEDDDAATSNFGGAGAAGVEQEMDEIDSEREVRGTTRGGGEKRHHEGGGTEPRVDRAGRGVGGYPPPYSPRAVRKHQQRHPSP 310
            NILAAGFHGEVSENFPLVASK+DDDAATSNF GAGAAGVEQ+MDEID ERE RGTTRGGGEK H EGGGTEPRVD+A  GVGGYP PYSPRAVRKHQQR+PSP
Sbjct: 2665 NILAAGFHGEVSENFPLVASKQDDDAATSNFDGAGAAGVEQDMDEIDPEREARGTTRGGGEKFHREGGGTEPRVDKAVGGVGGYPLPYSPRAVRKHQQRYPSP 2767
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11469.1834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMF5_ECTSI5.140e-5091.26FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JYL2_9PHAE2.130e-4888.35FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11469contigEcto-sp8_S_contig11469:1299..1612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size315
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143219.9100814-CDS-Ecto-sp8_S_contig11469:1298..16101681143219.9100814-CDS-Ecto-sp8_S_contig11469:1298..1610Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11469 1299..1610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11469.1834.1prot_Ecto-sp8_S_contig11469.1834.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11469 1299..1610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11469.1834.1

>prot_Ecto-sp8_S_contig11469.1834.1 ID=prot_Ecto-sp8_S_contig11469.1834.1|Name=mRNA_Ecto-sp8_S_contig11469.1834.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=104bp
GETDAAAGASARRGENKAAGILPLLCLLCLRGVPFHPLHGGVFLLRLSSF
LGPLFPSRSHPSLVPRRPRQRRRNCSSRHRRPPLTPREESSRKLRRGTRR
LECL
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mRNA from alignment at Ecto-sp8_S_contig11469:1299..1612+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11469.1834.1 ID=mRNA_Ecto-sp8_S_contig11469.1834.1|Name=mRNA_Ecto-sp8_S_contig11469.1834.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=314bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11469:1299..1612+ (Ectocarpus species8 EcLAC_412)
GGGGAGACGGATGCCGCTGCTGGTGCTTCCGCACGGCGCGGGGAGAATAA
GGCGGCGGGTATCCTCCCACTCCTCTGCCTGCTCTGTCTACGCGGGGTTC
CGTTCCACCCCCTTCATGGTGGCGTTTTTCTCCTCCGCCTCTCGTCGTTC
CTCGGACCTCTCTTTCCGAGTCGATCTCATCCATCTCTTGTTCCACGCCG
GCCGCGCCAGCGCCGCCGAAATTGCTCGTCGCGGCATCGTCGTCCTCCTT
TGACGCCACGAGAGGAAAGTTCTCGGAAACTTCGCCGTGGAACCCGGCGG
CTAGAATGTTTGCG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11469:1299..1612+

>mRNA_Ecto-sp8_S_contig11469.1834.1 ID=mRNA_Ecto-sp8_S_contig11469.1834.1|Name=mRNA_Ecto-sp8_S_contig11469.1834.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11469:1299..1612+ (Ectocarpus species8 EcLAC_412)
GGGGAGACGGATGCCGCTGCTGGTGCTTCCGCACGGCGCGGGGAGAATAA
GGCGGCGGGTATCCTCCCACTCCTCTGCCTGCTCTGTCTACGCGGGGTTC
CGTTCCACCCCCTTCATGGTGGCGTTTTTCTCCTCCGCCTCTCGTCGTTC
CTCGGACCTCTCTTTCCGAGTCGATCTCATCCATCTCTTGTTCCACGCCG
GCCGCGCCAGCGCCGCCGAAATTGCTCGTCGCGGCATCGTCGTCCTCCTT
TGACGCCACGAGAGGAAAGTTCTCGGAAACTTCGCCGTGGAACCCGGCGG
CTAGAATGTTTG
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