mRNA_Ecto-sp8_S_contig10966.1334.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10966.1334.1
Unique NamemRNA_Ecto-sp8_S_contig10966.1334.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10966.1334.1 vs. uniprot
Match: D8LMY3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMY3_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 4.280e-50
Identity = 89/93 (95.70%), Postives = 92/93 (98.92%), Query Frame = 1 
Query:    1 QEMTEQLSKLEGLAAGGNDGHTLLQQHQKEMLAKLREIRAAMATETGELDSVKEANAEVAKLREVLKRRDYRILHLTRALEAGASSSADPTSA 279
            +EMTEQLSKLEGLA GGNDGHTLLQQHQKEMLAKLREIRAAMATETGELDSVKEANAEVAKLREV+KRRDYRILHL+RALEAGASSSADPTSA
Sbjct:    6 KEMTEQLSKLEGLA-GGNDGHTLLQQHQKEMLAKLREIRAAMATETGELDSVKEANAEVAKLREVIKRRDYRILHLSRALEAGASSSADPTSA 97
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10966.1334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMY3_ECTSI4.280e-5095.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10966contigEcto-sp8_S_contig10966:5521..6381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size282
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_004110.1
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143184.1850154-CDS-Ecto-sp8_S_contig10966:5520..57591681143184.1850154-CDS-Ecto-sp8_S_contig10966:5520..5759Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10966 5521..5759 -
1681143184.1926382-CDS-Ecto-sp8_S_contig10966:6338..63751681143184.1926382-CDS-Ecto-sp8_S_contig10966:6338..6375Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10966 6339..6375 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143184.1998203-UTR-Ecto-sp8_S_contig10966:6375..63811681143184.1998203-UTR-Ecto-sp8_S_contig10966:6375..6381Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10966 6376..6381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10966.1334.1prot_Ecto-sp8_S_contig10966.1334.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10966 5521..6375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10966.1334.1

>prot_Ecto-sp8_S_contig10966.1334.1 ID=prot_Ecto-sp8_S_contig10966.1334.1|Name=mRNA_Ecto-sp8_S_contig10966.1334.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=92bp
MTEQLSKLEGLAAGGNDGHTLLQQHQKEMLAKLREIRAAMATETGELDSV
KEANAEVAKLREVLKRRDYRILHLTRALEAGASSSADPTSA*
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mRNA from alignment at Ecto-sp8_S_contig10966:5521..6381-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10966.1334.1 ID=mRNA_Ecto-sp8_S_contig10966.1334.1|Name=mRNA_Ecto-sp8_S_contig10966.1334.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=861bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10966:5521..6381- (Ectocarpus species8 EcLAC_412)
CAGGAGATGACCGAACAGCTCTCCAAGCTCGAGGGGCTGGCAGGTGAGCT
TGTACACTGCTGTTTTTTCATGAGCGGTTCTACACAAAAAGCGGTGCTTC
GTACCAGTCTGCCTTGAACCTCGCTGGCGTGTACCGTAGGTTTCGTAAGG
TATCACACCCCCTTGACGACCGATTTTCAAAGCTTGCTTACTCCACGACG
AAGAGGATGACGAGATTGAAGTATACTTCGTTTTCGGAAAGCTCTCGACG
AGACGGTTCCGACGCCGCCCGACATTTTCGGCACCATCACTGCTTTTCCT
GGCGAGATATCGAGCTTCGCCAGATTGGTCCAGGGGGTGTGGTATGTTAC
GCAATGCAACCTTGGGTAGACAGATGGAACAACTCACGTGCTGGCTCCAG
AGGGAATCTGCATCCGGCCGAGCACCTTGACGATGTGTCTTTCTCTTGTG
TTTTACTCTTGGGTTGCATACACATTACACGACACACCACGCCGGTGTCT
CGCGCGAATCGCCCCCCGGGGGCGGGCATTTTACGCCGGCCTCCGAGATG
AAAAATGAGCACCATCCCTTGCGAACACAACCCCTAAACAAAGCCCCCCT
TTTCTCCGCTGGATGGGGAGAGCAGGCGGGAACGACGGACACACTCTGCT
ACAGCAGCACCAGAAGGAGATGCTCGCCAAGCTCCGGGAGATTCGCGCGG
CCATGGCGACGGAGACGGGAGAGCTGGACTCGGTAAAGGAGGCCAACGCG
GAGGTGGCCAAGCTGCGGGAAGTACTCAAGAGGAGAGACTACCGCATATT
GCACCTCACGAGGGCCTTGGAGGCGGGGGCGTCTTCTTCTGCTGACCCTA
CGTCGGCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10966:5521..6381-

>mRNA_Ecto-sp8_S_contig10966.1334.1 ID=mRNA_Ecto-sp8_S_contig10966.1334.1|Name=mRNA_Ecto-sp8_S_contig10966.1334.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10966:5521..6381- (Ectocarpus species8 EcLAC_412)
ATGACCGAACAGCTCTCCAAGCTCGAGGGGCTGGCAGCAGGCGGGAACGA
CGGACACACTCTGCTACAGCAGCACCAGAAGGAGATGCTCGCCAAGCTCC
GGGAGATTCGCGCGGCCATGGCGACGGAGACGGGAGAGCTGGACTCGGTA
AAGGAGGCCAACGCGGAGGTGGCCAAGCTGCGGGAAGTACTCAAGAGGAG
AGACTACCGCATATTGCACCTCACGAGGGCCTTGGAGGCGGGGGCGTCTT
CTTCTGCTGACCCTACGTCGGCGTGA
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