mRNA_Ecto-sp8_S_contig10959.1329.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10959.1329.1
Unique NamemRNA_Ecto-sp8_S_contig10959.1329.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10959.1329.1 vs. uniprot
Match: D7FH80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH80_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.280e-23
Identity = 51/73 (69.86%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:   34 MDGDANSGAATPDEWGSAVASGDATKLAELVLVWSGSKPERALSVLRDCVSLLEKEVAFSAPAFPGVPSPPTS 252
            M+G A S +A PDEWG AVASGDATKLAELVL+WSG KPERALSV+RDCVS+LEKEVA S P    + + PT+
Sbjct:    1 MEGRAGSSSARPDEWGPAVASGDATKLAELVLLWSGLKPERALSVIRDCVSVLEKEVALSTPGSSPLRATPTT 73
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10959.1329.1 vs. uniprot
Match: D7FTA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA8_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.540e-21
Identity = 50/73 (68.49%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:   34 MDGDANSGAATPDEWGSAVASGDATKLAELVLVWSGSKPERALSVLRDCVSLLEKEVAFSAPAFPGVPSPPTS 252
            M+GDA SG+A PD WGSAVASGDAT LAELVL+W G  P  ALS+LR CV++LEKEVA SAP    +PSP TS
Sbjct:    1 MEGDAGSGSARPDAWGSAVASGDATGLAELVLLWCGVLPHPALSILRRCVAVLEKEVALSAPTSSPLPSPQTS 73
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10959.1329.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 4.950e-21
Identity = 50/75 (66.67%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:   19 DTPSIMDGDANSGAATPDEWGSAVASGDATKLAELVLVWSGSKPERALSVLRDCVSLLEKEVAFSAPAFPGVPSP 243
            DT ++M+GD  SG+A+PD+WG AVA+GDATKLAELVLVWSGS+PE ALS+LR+CV LLE+E AFS P    + SP
Sbjct:   51 DTYTVMEGDVGSGSASPDKWGLAVATGDATKLAELVLVWSGSRPEAALSLLRECVLLLEEEAAFSVPDSSPLQSP 125
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10959.1329.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.550e-15
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:  103 ATKLAELVLVWSGSKPERALSVLRDCVSLLEKEVAFSAPAFPGVPSPPTSP 255
            AT+LA+LVLVWSGS+PE ALS+L+DCVSLLEKE AFSAPAFP VP  PT P
Sbjct:   56 ATRLAQLVLVWSGSEPEPALSILKDCVSLLEKEFAFSAPAFPAVPLLPTMP 106
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10959.1329.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 9.230e-12
Identity = 46/75 (61.33%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:    1 KGLSAGDTPSIMDGDANSGAATPDEW---GSAVASGDATKLAELVLVWSGSKPERALSVLRDCVSLLEKEVAFSA 216
            +GL+  D   +M G    G      W   GSAVASG ATKLAELVLVWS SKPERALS+ R CVSLLEKE A SA
Sbjct:   44 RGLNTSDKQRVMGGRRRFGVRKA--WRRRGSAVASGAATKLAELVLVWSVSKPERALSIARTCVSLLEKEDAHSA 116
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10959.1329.1 vs. uniprot
Match: D7FH98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH98_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 1.930e-6
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:   70 DEWGSAVASGDATKLAELVLVWSGSKPERALSVLRDCVSLLEKEVA 207
            DEW SAVA GDA KL++LVL  +GS  E ALS+L+ CV++LEK+ A
Sbjct:    2 DEWNSAVAGGDAEKLSDLVLSSAGSSTEAALSILKSCVTILEKKQA 47
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10959.1329.1 vs. uniprot
Match: A0A6H5KI43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI43_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 6.360e-6
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   70 DEWGSAVASGDATKLAELVLVWSGSKPERALSVLRDCVSLLEK 198
            DEW SAVA GDA KL++LVL+ +GS  + ALS+L+ CV++LEK
Sbjct:    2 DEWKSAVAGGDAAKLSDLVLLSAGSSTDAALSILKSCVTMLEK 44
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10959.1329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FH80_ECTSI1.280e-2369.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTA8_ECTSI1.540e-2168.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPY7_9PHAE4.950e-2166.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2S9_ECTSI2.550e-1578.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUL5_ECTSI9.230e-1261.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FH98_ECTSI1.930e-660.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KI43_9PHAE6.360e-660.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10959contigEcto-sp8_S_contig10959:4297..5802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size342
Hectar predicted targeting categoryother localisation
Exons3
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143183.8870633-CDS-Ecto-sp8_S_contig10959:4297..43801681143183.8870633-CDS-Ecto-sp8_S_contig10959:4297..4380Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10959 4298..4380 -
1681143183.8978627-CDS-Ecto-sp8_S_contig10959:4626..48121681143183.8978627-CDS-Ecto-sp8_S_contig10959:4626..4812Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10959 4627..4812 -
1681143183.9051373-CDS-Ecto-sp8_S_contig10959:5732..58021681143183.9051373-CDS-Ecto-sp8_S_contig10959:5732..5802Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10959 5733..5802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10959.1329.1prot_Ecto-sp8_S_contig10959.1329.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10959 4298..5802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10959.1329.1

>prot_Ecto-sp8_S_contig10959.1329.1 ID=prot_Ecto-sp8_S_contig10959.1329.1|Name=mRNA_Ecto-sp8_S_contig10959.1329.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=113bp
KGLSAGDTPSIMDGDANSGAATPDEWGSAVASGDATKLAELVLVWSGSKP
ERALSVLRDCVSLLEKEVAFSAPAFPGVPSPPTSPAAKCFIKDAVKNTAA
WDLLKQKDYLALQ
back to top

mRNA from alignment at Ecto-sp8_S_contig10959:4297..5802-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10959.1329.1 ID=mRNA_Ecto-sp8_S_contig10959.1329.1|Name=mRNA_Ecto-sp8_S_contig10959.1329.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1506bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10959:4297..5802- (Ectocarpus species8 EcLAC_412)
AAAGGTCTGAGTGCGGGTGACACACCGAGCATCATGGATGGAGACGCCAA
TTCGGGTGCCGCAACGCCTGGTGAGCAAAGAACGAGCTATATTGGTGCAG
AAGTTAGTCGTGTTTCGTTTCCATTTGTCACTCACACGGAAAGGATTCGA
GCCTTACAAGCACCAACTGAATTTTTGTTCCGTATTTTTCGGTTCAGTCG
CATGTGCGGCGCTTGTGCTTTTGTGAGCAGCGCCGGTTGCAGGCTCGCAA
TCGCAGCGTTACAGTTTCGTTGCTGGAAGGGTTTTAGGCCCATGTCGAGC
TTCTCCCAAATGCTCTCTCGGTACCACTTTGTTTTTGACCGAAGTCCCAC
AATCCCCATATATGAAGATGATTTTGCTAGATTCCAATATCTCCGTGCAC
TTGAAGCTTATTTAGTTTTTCCATACCCAAGTTGCTCGCATTCTTCACAT
GTTTCGACAGTATTCTGGCTGGTCTGCCTTTGGAAGTGTTCGTTATTCTT
TCGTGTACAGTGGGACGCGACGGGCATTGCAGTATATGAGCTTCGTTGTT
GGGACACGCCGTCTTACCATTGATTGGGTTGCAACGGAACGAGTTTGGCT
CTGTTCTGTTCGGTGGTGTTCCACGGCTGACAGCTCTGCCATCTGCAATA
TTCGTGATTGGGAGGATCGAACATCCGCATGAGCCCATCAAGCACCCTGT
GCACATCCTCAGGAAGCGATGCTCTCAGGCAGTAAAGTAGCGAATGCAAA
CCATGGAATTGGTGTTATTGGCTTGGGAGAATGCTTACACGTGCCACATG
TGAATATGCGTGTCCTTTGCTCCATTTCGAAGAGTTTTGTTGAGGTGGAA
TATCTTTCGAAAGAGATCGCTGCATTCAGAAATTGGGGTGAAGGGTGAAG
GGTGAAGTGTCCAACCTTGATGTCCAGCCCGCAGCCAATCCTTAGTATGC
AATTACCTTTGACAAGACCGTCAAACTGACGATTCCGCAGATGAATGGGG
TTCGGCCGTGGCCAGTGGCGACGCGACCAAGCTAGCCGAGCTGGTACTGG
TTTGGTCCGGTTCAAAGCCGGAGCGGGCTCTGTCAGTTCTGAGAGACTGC
GTCTCTTTGCTGGAGAAGGAGGTTGCATTTTCAGCCCCGGCTTTTCCAGG
CGTTCCTTCGCCTCCAACTTCGCCTGGTGAGTTCCTTATTCACGTCTGGA
GGTTATGAATTTCGGAAACGCAATATTTGACGTCTTTGCGCCCGAAGGCT
TCTGCAGGTGGGTACCTGGCGCAAAGGCTTGGTCTTGCTGGAGGGAAGCG
ATTCAAAAAGCTAACCAGCGGTTGTGAGATCCAGTGGCTCTTGCGAGATC
GTGACGGTCGCGATAACTATCCCAAAATCGCTGCCAATGTTTTGCGCCGC
GACATTCTCTTGCTCGCGCCAGCAGCGAAGTGTTTCATCAAGGACGCTGT
CAAGAATACCGCCGCGTGGGATCTTCTCAAGCAGAAGGACTACCTCGCTC
TTCAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10959:4297..5802-

>mRNA_Ecto-sp8_S_contig10959.1329.1 ID=mRNA_Ecto-sp8_S_contig10959.1329.1|Name=mRNA_Ecto-sp8_S_contig10959.1329.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10959:4297..5802- (Ectocarpus species8 EcLAC_412)
AAAGGTCTGAGTGCGGGTGACACACCGAGCATCATGGATGGAGACGCCAA
TTCGGGTGCCGCAACGCCTGATGAATGGGGTTCGGCCGTGGCCAGTGGCG
ACGCGACCAAGCTAGCCGAGCTGGTACTGGTTTGGTCCGGTTCAAAGCCG
GAGCGGGCTCTGTCAGTTCTGAGAGACTGCGTCTCTTTGCTGGAGAAGGA
GGTTGCATTTTCAGCCCCGGCTTTTCCAGGCGTTCCTTCGCCTCCAACTT
CGCCTGCAGCGAAGTGTTTCATCAAGGACGCTGTCAAGAATACCGCCGCG
TGGGATCTTCTCAAGCAGAAGGACTACCTCGCTCTTCAA
back to top