mRNA_Ecto-sp8_S_contig10684.1057.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10684.1057.1
Unique NamemRNA_Ecto-sp8_S_contig10684.1057.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10684.1057.1 vs. uniprot
Match: D8LFA3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFA3_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 4.940e-50
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1
Query:   10 QVPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYLPDHDVKG 258
            QVPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYLPDHDVKG
Sbjct:  680 QVPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYLPDHDVKG 762          
BLAST of mRNA_Ecto-sp8_S_contig10684.1057.1 vs. uniprot
Match: A0A6S8SBJ0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8SBJ0_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.940e-26
Identity = 45/74 (60.81%), Postives = 62/74 (83.78%), Query Frame = 1
Query:    4 AQQVPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATL 225
            A +VP+ R+ Q+PG+FVVTFP+A+HGGFSYGFNCGEAVNFA PDW+ ++R + E YR + R+A +SHD+++ TL
Sbjct:   79 ALEVPIHRICQNPGEFVVTFPQAFHGGFSYGFNCGEAVNFATPDWVQHARVANERYRRSGRLAVISHDRLMFTL 152          
BLAST of mRNA_Ecto-sp8_S_contig10684.1057.1 vs. uniprot
Match: A0A8J2SEY4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEY4_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.470e-25
Identity = 45/74 (60.81%), Postives = 62/74 (83.78%), Query Frame = 1
Query:    4 AQQVPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATL 225
            A +VP+ R+ Q+PG+FVVTFP+A+HGGFSYGFNCGEAVNFA PDW+ ++R + E YR + R+A +SHD+++ TL
Sbjct:  329 ALEVPIHRICQNPGEFVVTFPQAFHGGFSYGFNCGEAVNFATPDWVQHARVANERYRRSGRLAVISHDRLMFTL 402          
BLAST of mRNA_Ecto-sp8_S_contig10684.1057.1 vs. uniprot
Match: A0A6U4ECJ0_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4ECJ0_9STRA)

HSP 1 Score: 107 bits (267), Expect = 3.130e-25
Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:   13 VPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYL 237
            VPVCR  QH G+FVVTFPKA+HGGFSYGFNCGEAVNFA P+WI Y RE+   YR  +R + LSHD+++  L   L
Sbjct:  353 VPVCRTVQHAGEFVVTFPKAFHGGFSYGFNCGEAVNFAPPEWIEYGREAALRYRIYARPSVLSHDRVLLLLAYNL 427          
BLAST of mRNA_Ecto-sp8_S_contig10684.1057.1 vs. uniprot
Match: F0XYW6_AURAN (JmjC domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYW6_AURAN)

HSP 1 Score: 104 bits (260), Expect = 1.310e-24
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   13 VPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYLPDHD 249
            VPV +L Q PG FVVTFP+A+H GFSYGFNCGEAVNFA+P WI +++ + E YR   R+A L HD+++ TL  Y+ + D
Sbjct:  211 VPVYKLVQEPGTFVVTFPQAFHSGFSYGFNCGEAVNFAMPHWIEHAKLANERYRRIGRLAVLGHDRLIFTLARYVDELD 289          
BLAST of mRNA_Ecto-sp8_S_contig10684.1057.1 vs. uniprot
Match: A0A7S0G863_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G863_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.250e-23
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 1
Query:   13 VPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYLPDH 246
            VP C++ Q+ G+FVVTFP+A+HGGFS G N GEAVNFA PDWI +  E+ E YR+ +R A  SHD++ +TL  YL +H
Sbjct:  367 VPACKILQNAGEFVVTFPRAFHGGFSMGPNVGEAVNFATPDWICHGAEANERYRAIARPAVFSHDRLTSTLANYLEEH 444          
BLAST of mRNA_Ecto-sp8_S_contig10684.1057.1 vs. uniprot
Match: A0A6U3NYJ8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3NYJ8_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 9.180e-22
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query:   13 VPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYL 237
            VPV ++ QH G+FVVTFP+A+HGGFS G NCGEAVNFA  DWI +  +++E YRS +R A  SHD++  T+  +L
Sbjct:   12 VPVYKILQHAGEFVVTFPRAFHGGFSLGPNCGEAVNFATHDWIHHGADASERYRSFARPAVFSHDRLTFTMANHL 86          
BLAST of mRNA_Ecto-sp8_S_contig10684.1057.1 vs. uniprot
Match: A0A7S4IRT4_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IRT4_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 9.920e-22
Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   13 VPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYLPD 243
            VPV ++ Q  G+FVVTFP+A+HGGFSYG NCGEAVNFA  DWIS   ++ E YRS +R +  SHD++  T++ +L D
Sbjct:  279 VPVYKILQRAGEFVVTFPRAFHGGFSYGPNCGEAVNFATHDWISQGADANERYRSFARPSVFSHDRLTFTMSNHLKD 355          
BLAST of mRNA_Ecto-sp8_S_contig10684.1057.1 vs. uniprot
Match: A0A7S3ZPX7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZPX7_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.220e-21
Identity = 41/71 (57.75%), Postives = 56/71 (78.87%), Query Frame = 1
Query:   13 VPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATL 225
            VP+  L+Q PG+FVVTFP+AYHGGFS GFN GEAVNFA PDW+ ++R + E YR+ +R+  + HD+++ TL
Sbjct:  302 VPMYALRQMPGEFVVTFPRAYHGGFSLGFNIGEAVNFATPDWVQHARLANEHYRTIARLGVVGHDRLMFTL 372          
BLAST of mRNA_Ecto-sp8_S_contig10684.1057.1 vs. uniprot
Match: A0A835V4H1_VANPL (JmjC domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835V4H1_VANPL)

HSP 1 Score: 96.3 bits (238), Expect = 1.270e-21
Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    1 MAQQVPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTM 231
            +A  VPVCRL QHPG+FVVTFP+AYH GFS+GFNCGEA NFA P W+  ++E+     + + +  LSH +++  LTM
Sbjct:  135 VASSVPVCRLVQHPGEFVVTFPRAYHVGFSHGFNCGEAANFATPQWLKVAKEAAIRRAAMNLLPMLSHQQLLYILTM 211          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10684.1057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFA3_ECTSI4.940e-50100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6S8SBJ0_9STRA1.940e-2660.81Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2SEY4_9STRA1.470e-2560.81Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6U4ECJ0_9STRA3.130e-2564.00Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
F0XYW6_AURAN1.310e-2456.96JmjC domain-containing protein n=1 Tax=Aureococcus... [more]
A0A7S0G863_9STRA1.250e-2356.41Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A6U3NYJ8_9STRA9.180e-2256.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4IRT4_9STRA9.920e-2255.84Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S3ZPX7_9STRA1.220e-2157.75Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A835V4H1_VANPL1.270e-2154.55JmjC domain-containing protein n=1 Tax=Vanilla pla... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10684contigEcto-sp8_S_contig10684:5081..5579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score178.7
Seed ortholog evalue1.2e-42
Seed eggNOG ortholog2880.D8LFA3
Model size261
KEGG koko:K11446
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.histone lysine demethylation
EggNOG OGsCOG0055@1,KOG1246@2759
Cds size261
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143164.472651-CDS-Ecto-sp8_S_contig10684:5080..52151681143164.472651-CDS-Ecto-sp8_S_contig10684:5080..5215Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10684 5081..5215 -
1681143164.483694-CDS-Ecto-sp8_S_contig10684:5453..55791681143164.483694-CDS-Ecto-sp8_S_contig10684:5453..5579Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10684 5454..5579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10684.1057.1prot_Ecto-sp8_S_contig10684.1057.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10684 5081..5579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10684.1057.1

>prot_Ecto-sp8_S_contig10684.1057.1 ID=prot_Ecto-sp8_S_contig10684.1057.1|Name=mRNA_Ecto-sp8_S_contig10684.1057.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=87bp
MAQQVPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYS
RESTEAYRSASRMAALSHDKMVATLTMYLPDHDVKG*
back to top

mRNA from alignment at Ecto-sp8_S_contig10684:5081..5579-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10684.1057.1 ID=mRNA_Ecto-sp8_S_contig10684.1057.1|Name=mRNA_Ecto-sp8_S_contig10684.1057.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=499bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10684:5081..5579- (Ectocarpus species8 EcLAC_412)
ATGGCGCAACAGGTGCCGGTGTGCCGACTGCAGCAGCACCCGGGCCAGTT CGTGGTCACCTTCCCCAAGGCCTATCACGGGGGCTTCAGCTACGGCTTCA ACTGCGGAGAGGCGGTCAACTTCGCGGTGAGATGTGTTGGGATACCTGAA CAAAGTCATTCGTTGGTACTCCCTAAGCGATAATTCGTCGGATCCCCGTA AACAATCATCCGACAGAACCCTTAAACAATCAGTCGTCGGTACCCTTTAA ACCATTTATCATTCATCGGAACCCCTTTAAACGATCATTCGTCGTACCAC TACCCCTTAAGAATTGGCATTTACTTACATGACCGCGGTTTTGATTTCAT CGTTTCGATGGCAGGTGCCGGACTGGATCTCGTACTCCAGGGAGAGCACG GAGGCCTACCGCAGCGCGAGCAGGATGGCGGCCCTCTCGCACGACAAGAT GGTGGCCACGCTCACCATGTACCTGCCCGACCACGACGTGAAGGGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10684:5081..5579-

>mRNA_Ecto-sp8_S_contig10684.1057.1 ID=mRNA_Ecto-sp8_S_contig10684.1057.1|Name=mRNA_Ecto-sp8_S_contig10684.1057.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10684:5081..5579- (Ectocarpus species8 EcLAC_412)
ATGGCGCAACAGGTGCCGGTGTGCCGACTGCAGCAGCACCCGGGCCAGTT
CGTGGTCACCTTCCCCAAGGCCTATCACGGGGGCTTCAGCTACGGCTTCA
ACTGCGGAGAGGCGGTCAACTTCGCGGTGCCGGACTGGATCTCGTACTCC
AGGGAGAGCACGGAGGCCTACCGCAGCGCGAGCAGGATGGCGGCCCTCTC
GCACGACAAGATGGTGGCCACGCTCACCATGTACCTGCCCGACCACGACG
TGAAGGGGTGA
back to top