mRNA_Ecto-sp8_S_contig10684.1057.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10684.1057.1 vs. uniprot
Match: D8LFA3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFA3_ECTSI) HSP 1 Score: 177 bits (450), Expect = 4.940e-50 Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1
Query: 10 QVPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYLPDHDVKG 258
QVPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYLPDHDVKG
Sbjct: 680 QVPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYLPDHDVKG 762
BLAST of mRNA_Ecto-sp8_S_contig10684.1057.1 vs. uniprot
Match: A0A6S8SBJ0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8SBJ0_9STRA) HSP 1 Score: 108 bits (269), Expect = 1.940e-26 Identity = 45/74 (60.81%), Postives = 62/74 (83.78%), Query Frame = 1
Query: 4 AQQVPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATL 225
A +VP+ R+ Q+PG+FVVTFP+A+HGGFSYGFNCGEAVNFA PDW+ ++R + E YR + R+A +SHD+++ TL
Sbjct: 79 ALEVPIHRICQNPGEFVVTFPQAFHGGFSYGFNCGEAVNFATPDWVQHARVANERYRRSGRLAVISHDRLMFTL 152
BLAST of mRNA_Ecto-sp8_S_contig10684.1057.1 vs. uniprot
Match: A0A8J2SEY4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEY4_9STRA) HSP 1 Score: 108 bits (269), Expect = 1.470e-25 Identity = 45/74 (60.81%), Postives = 62/74 (83.78%), Query Frame = 1
Query: 4 AQQVPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATL 225
A +VP+ R+ Q+PG+FVVTFP+A+HGGFSYGFNCGEAVNFA PDW+ ++R + E YR + R+A +SHD+++ TL
Sbjct: 329 ALEVPIHRICQNPGEFVVTFPQAFHGGFSYGFNCGEAVNFATPDWVQHARVANERYRRSGRLAVISHDRLMFTL 402
BLAST of mRNA_Ecto-sp8_S_contig10684.1057.1 vs. uniprot
Match: A0A6U4ECJ0_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4ECJ0_9STRA) HSP 1 Score: 107 bits (267), Expect = 3.130e-25 Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query: 13 VPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYL 237
VPVCR QH G+FVVTFPKA+HGGFSYGFNCGEAVNFA P+WI Y RE+ YR +R + LSHD+++ L L
Sbjct: 353 VPVCRTVQHAGEFVVTFPKAFHGGFSYGFNCGEAVNFAPPEWIEYGREAALRYRIYARPSVLSHDRVLLLLAYNL 427
BLAST of mRNA_Ecto-sp8_S_contig10684.1057.1 vs. uniprot
Match: F0XYW6_AURAN (JmjC domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYW6_AURAN) HSP 1 Score: 104 bits (260), Expect = 1.310e-24 Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 1
Query: 13 VPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYLPDHD 249
VPV +L Q PG FVVTFP+A+H GFSYGFNCGEAVNFA+P WI +++ + E YR R+A L HD+++ TL Y+ + D
Sbjct: 211 VPVYKLVQEPGTFVVTFPQAFHSGFSYGFNCGEAVNFAMPHWIEHAKLANERYRRIGRLAVLGHDRLIFTLARYVDELD 289
BLAST of mRNA_Ecto-sp8_S_contig10684.1057.1 vs. uniprot
Match: A0A7S0G863_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G863_9STRA) HSP 1 Score: 102 bits (255), Expect = 1.250e-23 Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 1
Query: 13 VPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYLPDH 246
VP C++ Q+ G+FVVTFP+A+HGGFS G N GEAVNFA PDWI + E+ E YR+ +R A SHD++ +TL YL +H
Sbjct: 367 VPACKILQNAGEFVVTFPRAFHGGFSMGPNVGEAVNFATPDWICHGAEANERYRAIARPAVFSHDRLTSTLANYLEEH 444
BLAST of mRNA_Ecto-sp8_S_contig10684.1057.1 vs. uniprot
Match: A0A6U3NYJ8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3NYJ8_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 9.180e-22 Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query: 13 VPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYL 237
VPV ++ QH G+FVVTFP+A+HGGFS G NCGEAVNFA DWI + +++E YRS +R A SHD++ T+ +L
Sbjct: 12 VPVYKILQHAGEFVVTFPRAFHGGFSLGPNCGEAVNFATHDWIHHGADASERYRSFARPAVFSHDRLTFTMANHL 86
BLAST of mRNA_Ecto-sp8_S_contig10684.1057.1 vs. uniprot
Match: A0A7S4IRT4_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IRT4_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 9.920e-22 Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 1
Query: 13 VPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYLPD 243
VPV ++ Q G+FVVTFP+A+HGGFSYG NCGEAVNFA DWIS ++ E YRS +R + SHD++ T++ +L D
Sbjct: 279 VPVYKILQRAGEFVVTFPRAFHGGFSYGPNCGEAVNFATHDWISQGADANERYRSFARPSVFSHDRLTFTMSNHLKD 355
BLAST of mRNA_Ecto-sp8_S_contig10684.1057.1 vs. uniprot
Match: A0A7S3ZPX7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZPX7_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 1.220e-21 Identity = 41/71 (57.75%), Postives = 56/71 (78.87%), Query Frame = 1
Query: 13 VPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATL 225
VP+ L+Q PG+FVVTFP+AYHGGFS GFN GEAVNFA PDW+ ++R + E YR+ +R+ + HD+++ TL
Sbjct: 302 VPMYALRQMPGEFVVTFPRAYHGGFSLGFNIGEAVNFATPDWVQHARLANEHYRTIARLGVVGHDRLMFTL 372
BLAST of mRNA_Ecto-sp8_S_contig10684.1057.1 vs. uniprot
Match: A0A835V4H1_VANPL (JmjC domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835V4H1_VANPL) HSP 1 Score: 96.3 bits (238), Expect = 1.270e-21 Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 1 MAQQVPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTM 231
+A VPVCRL QHPG+FVVTFP+AYH GFS+GFNCGEA NFA P W+ ++E+ + + + LSH +++ LTM
Sbjct: 135 VASSVPVCRLVQHPGEFVVTFPRAYHVGFSHGFNCGEAANFATPQWLKVAKEAAIRRAAMNLLPMLSHQQLLYILTM 211 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10684.1057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10684.1057.1 >prot_Ecto-sp8_S_contig10684.1057.1 ID=prot_Ecto-sp8_S_contig10684.1057.1|Name=mRNA_Ecto-sp8_S_contig10684.1057.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=87bp MAQQVPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSback to top mRNA from alignment at Ecto-sp8_S_contig10684:5081..5579- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10684.1057.1 ID=mRNA_Ecto-sp8_S_contig10684.1057.1|Name=mRNA_Ecto-sp8_S_contig10684.1057.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=499bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10684:5081..5579- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10684:5081..5579- >mRNA_Ecto-sp8_S_contig10684.1057.1 ID=mRNA_Ecto-sp8_S_contig10684.1057.1|Name=mRNA_Ecto-sp8_S_contig10684.1057.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10684:5081..5579- (Ectocarpus species8 EcLAC_412)back to top |