mRNA_Ecto-sp8_S_contig106325.994.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106325.994.1
Unique NamemRNA_Ecto-sp8_S_contig106325.994.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig106325.994.1 vs. uniprot
Match: A0A2M7LCE6_9SPHN (Uncharacterized protein n=1 Tax=Sphingomonadales bacterium CG_4_10_14_3_um_filter_58_15 TaxID=1974093 RepID=A0A2M7LCE6_9SPHN)

HSP 1 Score: 277 bits (709), Expect = 2.380e-92
Identity = 125/163 (76.69%), Postives = 146/163 (89.57%), Query Frame = 1 
Query:    1 IEAVLNVHPFHTIHCDFMQKMIPHARLIGTHRHHQQKPDLQWDPALIEDPATQKEFADLFDFSIPSGVDFVSDDDDVHVGSVLVRHRASGTVHVDDTLMYIDLPSLLQKMVPGPKLQFHPKLADGLEKRAGAADDYIRWAKDLAHNWTDTQTICAAHNGIIDL 489
            I+AVLNVHPFHTIHC FMQ+M+PHARLIGT RHHQQ PDL WDPAL+EDPATQ+EFAD+FDFSIP+GVDF+ +D+ VHV SV+VRHR SG VHVDDTLM+++LPSL+ K++PGPKL+FHPKLADGLEKRAGAADDYI WAK LA +W DT+ +CAAHNGI  L
Sbjct:   63 IKAVLNVHPFHTIHCKFMQEMLPHARLIGTRRHHQQMPDLPWDPALVEDPATQQEFADIFDFSIPAGVDFIPEDESVHVSSVMVRHRESGIVHVDDTLMFMNLPSLIDKLLPGPKLRFHPKLADGLEKRAGAADDYIAWAKSLARDWADTKIVCAAHNGIFRL 225
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BLAST of mRNA_Ecto-sp8_S_contig106325.994.1 vs. uniprot
Match: UPI001593D284 (hypothetical protein n=1 Tax=Parasphingorhabdus flavimaris TaxID=266812 RepID=UPI001593D284)

HSP 1 Score: 274 bits (700), Expect = 5.570e-91
Identity = 126/163 (77.30%), Postives = 143/163 (87.73%), Query Frame = 1 
Query:    1 IEAVLNVHPFHTIHCDFMQKMIPHARLIGTHRHHQQKPDLQWDPALIEDPATQKEFADLFDFSIPSGVDFVSDDDDVHVGSVLVRHRASGTVHVDDTLMYIDLPSLLQKMVPGPKLQFHPKLADGLEKRAGAADDYIRWAKDLAHNWTDTQTICAAHNGIIDL 489
            IEAVLNVHPFHTIHC F +K+ P+ARLIGT RHH+QKPDL WD ALIED ATQ+EFADLFDFSIPSGVDF+SDD+ VHV SVL+RHRAS  VH DDTLMYIDLP+L QK++PGP+L+FHPKLADGLEKR+GAADDY+RWA  LA  W DT  ICAAHNGI+D+
Sbjct:   63 IEAVLNVHPFHTIHCGFAEKLAPNARLIGTRRHHEQKPDLHWDTALIEDAATQQEFADLFDFSIPSGVDFISDDEAVHVSSVLLRHRASRIVHADDTLMYIDLPALAQKLIPGPQLRFHPKLADGLEKRSGAADDYVRWANQLASEWADTSMICAAHNGILDM 225
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BLAST of mRNA_Ecto-sp8_S_contig106325.994.1 vs. uniprot
Match: A0A220W4H9_9SPHN (Uncharacterized protein n=2 Tax=Sphingorhabdus sp. SMR4y TaxID=2584094 RepID=A0A220W4H9_9SPHN)

HSP 1 Score: 272 bits (695), Expect = 3.430e-90
Identity = 123/163 (75.46%), Postives = 144/163 (88.34%), Query Frame = 1 
Query:    1 IEAVLNVHPFHTIHCDFMQKMIPHARLIGTHRHHQQKPDLQWDPALIEDPATQKEFADLFDFSIPSGVDFVSDDDDVHVGSVLVRHRASGTVHVDDTLMYIDLPSLLQKMVPGPKLQFHPKLADGLEKRAGAADDYIRWAKDLAHNWTDTQTICAAHNGIIDL 489
            IEAVLNVHPFHTIHC ++QKM+PHARLIGT RHH+Q P+L WD   IED ATQK+F+D+ DFSIPSGVDF+SDDD VHVGSV+VRHR SG +HVDDTLM IDLP+L+QKMVPGPKL+FHPKLADGLEKR GAADDYIRWAK+LA +W D+  +CAAH+G++ L
Sbjct:   65 IEAVLNVHPFHTIHCQYIQKMLPHARLIGTRRHHEQAPNLDWDADRIEDEATQKQFSDILDFSIPSGVDFISDDDSVHVGSVIVRHRESGIIHVDDTLMVIDLPALVQKMVPGPKLRFHPKLADGLEKRPGAADDYIRWAKELARDWADSSIVCAAHSGLLHL 227
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BLAST of mRNA_Ecto-sp8_S_contig106325.994.1 vs. uniprot
Match: A0A127MEI6_9SPHN (Uncharacterized protein n=2 Tax=Sphingorhabdus sp. M41 TaxID=1806885 RepID=A0A127MEI6_9SPHN)

HSP 1 Score: 270 bits (691), Expect = 1.300e-89
Identity = 125/163 (76.69%), Postives = 143/163 (87.73%), Query Frame = 1 
Query:    1 IEAVLNVHPFHTIHCDFMQKMIPHARLIGTHRHHQQKPDLQWDPALIEDPATQKEFADLFDFSIPSGVDFVSDDDDVHVGSVLVRHRASGTVHVDDTLMYIDLPSLLQKMVPGPKLQFHPKLADGLEKRAGAADDYIRWAKDLAHNWTDTQTICAAHNGIIDL 489
            IEAVLNVHPFHTIHC F+Q ++PHARLIGT RHH+Q P LQWDP +IED ATQ +F+D+FDFSIPSGVDF+SDDD VHVGSV+VRHR +  VHVDDTLM+IDLPSL+QK+VPGPKL+FHPKLADGLEKRAGAADDYI WA+ LA +W DT+ ICAAH GI  L
Sbjct:   63 IEAVLNVHPFHTIHCKFIQDILPHARLIGTRRHHEQAPHLQWDPDVIEDRATQSQFSDIFDFSIPSGVDFISDDDSVHVGSVIVRHRETDIVHVDDTLMFIDLPSLVQKVVPGPKLRFHPKLADGLEKRAGAADDYIAWARGLARDWADTKIICAAHKGIYRL 225
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BLAST of mRNA_Ecto-sp8_S_contig106325.994.1 vs. uniprot
Match: A0A2D3RGL7_9SPHN (Uncharacterized protein n=3 Tax=Sphingomonadaceae TaxID=41297 RepID=A0A2D3RGL7_9SPHN)

HSP 1 Score: 270 bits (689), Expect = 5.780e-89
Identity = 123/161 (76.40%), Postives = 141/161 (87.58%), Query Frame = 1 
Query:    1 IEAVLNVHPFHTIHCDFMQKMIPHARLIGTHRHHQQKPDLQWDPALIEDPATQKEFADLFDFSIPSGVDFVSDDDDVHVGSVLVRHRASGTVHVDDTLMYIDLPSLLQKMVPGPKLQFHPKLADGLEKRAGAADDYIRWAKDLAHNWTDTQTICAAHNGII 483
            IEAVLNVHPFHTIHC  MQ M+PHARLIGT RHH+Q P+L WDP  IED ATQ++F+D+ DFSIPSGVDF+SDDD VHVGSV+VRHR S  VH DDTLM IDLPSL+QK+VPGP+L+FHPKLADGLEKRAGAADDYIRWA+D+A +W DT  +CAAH+GII
Sbjct:   87 IEAVLNVHPFHTIHCQAMQDMLPHARLIGTRRHHEQAPELDWDPHFIEDEATQRQFSDILDFSIPSGVDFISDDDSVHVGSVIVRHRESRIVHADDTLMVIDLPSLVQKVVPGPQLRFHPKLADGLEKRAGAADDYIRWARDMARDWADTAAVCAAHSGII 247
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BLAST of mRNA_Ecto-sp8_S_contig106325.994.1 vs. uniprot
Match: A0A258TJS5_9SPHN (Uncharacterized protein n=1 Tax=Sphingomonas sp. 28-66-16 TaxID=1970435 RepID=A0A258TJS5_9SPHN)

HSP 1 Score: 267 bits (683), Expect = 2.140e-88
Identity = 123/163 (75.46%), Postives = 143/163 (87.73%), Query Frame = 1 
Query:    1 IEAVLNVHPFHTIHCDFMQKMIPHARLIGTHRHHQQKPDLQWDPALIEDPATQKEFADLFDFSIPSGVDFVSDDDDVHVGSVLVRHRASGTVHVDDTLMYIDLPSLLQKMVPGPKLQFHPKLADGLEKRAGAADDYIRWAKDLAHNWTDTQTICAAHNGIIDL 489
            IEAVLNVHPFHT+HC F+Q M+P+ARLIGT RHH   PDL+WDPALIE PATQ+ FADLFDFS+P+GVDF+SDD++VHVGSV+VRHRAS  VH DDTL  +DLPSL+QK+VPGP L+FHPKLA+ LEKRAGAADDYI WAKDLA +W DT+T+CAAHNGI  L
Sbjct:   63 IEAVLNVHPFHTVHCAFVQAMLPNARLIGTRRHHHHLPDLRWDPALIEAPATQRAFADLFDFSVPAGVDFISDDENVHVGSVVVRHRASRIVHADDTLNVLDLPSLIQKLVPGPGLRFHPKLAEALEKRAGAADDYIGWAKDLARDWADTRTVCAAHNGICHL 225
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BLAST of mRNA_Ecto-sp8_S_contig106325.994.1 vs. uniprot
Match: A0A2G2CXG6_9SPHN (Uncharacterized protein n=1 Tax=Sphingopyxis sp. TaxID=1908224 RepID=A0A2G2CXG6_9SPHN)

HSP 1 Score: 264 bits (674), Expect = 5.000e-87
Identity = 116/163 (71.17%), Postives = 144/163 (88.34%), Query Frame = 1 
Query:    1 IEAVLNVHPFHTIHCDFMQKMIPHARLIGTHRHHQQKPDLQWDPALIEDPATQKEFADLFDFSIPSGVDFVSDDDDVHVGSVLVRHRASGTVHVDDTLMYIDLPSLLQKMVPGPKLQFHPKLADGLEKRAGAADDYIRWAKDLAHNWTDTQTICAAHNGIIDL 489
            I+AVLNVHPFHTIHC F+ +M+PHARLIGT RHHQQ PDL+WDPALIED ATQ+EF+D+FDFSIP+GVDF+ +D+ VHV SV+V+HR SG +HVDDTLM+++LPSL+ K++PGP+L+FHPKLADGLEKRAGAADD++ WAK LA +W D + +CAAHNGI  L
Sbjct:   63 IKAVLNVHPFHTIHCKFINEMLPHARLIGTRRHHQQMPDLEWDPALIEDSATQQEFSDIFDFSIPAGVDFIPEDESVHVSSVMVKHRESGIIHVDDTLMFLNLPSLVDKLLPGPRLRFHPKLADGLEKRAGAADDFVAWAKSLASDWQDAKMVCAAHNGIFRL 225
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BLAST of mRNA_Ecto-sp8_S_contig106325.994.1 vs. uniprot
Match: A0A653JEC6_9SPHN (Uncharacterized protein n=1 Tax=Sphingorhabdus sp. 109 TaxID=2653173 RepID=A0A653JEC6_9SPHN)

HSP 1 Score: 258 bits (659), Expect = 4.030e-85
Identity = 115/161 (71.43%), Postives = 143/161 (88.82%), Query Frame = 1 
Query:    1 IEAVLNVHPFHTIHCDFMQKMIPHARLIGTHRHHQQKPDLQWDPALIEDPATQKEFADLFDFSIPSGVDFVSDDDDVHVGSVLVRHRASGTVHVDDTLMYIDLPSLLQKMVPGPKLQFHPKLADGLEKRAGAADDYIRWAKDLAHNWTDTQTICAAHNGII 483
            IEAVLNVHPFHTIHC ++Q+++PHARLIGT RHHQQ+P+L WD  L+ED ATQ++F+++ DFSIP GVDF+S D+ VHVGSV+VRHR SG VHVDDTLM IDLPSL+QK+VPGPKL+FHPKLADGLEKR+GAADD+IRWA++L  +W D+  +CAAH+GI+
Sbjct:   37 IEAVLNVHPFHTIHCQYIQELLPHARLIGTRRHHQQQPELPWDADLVEDEATQQQFSNILDFSIPCGVDFISGDESVHVGSVIVRHRDSGIVHVDDTLMIIDLPSLVQKIVPGPKLRFHPKLADGLEKRSGAADDFIRWAENLGRDWADSSIVCAAHSGIM 197
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BLAST of mRNA_Ecto-sp8_S_contig106325.994.1 vs. uniprot
Match: A0A1W1YNA0_9SPHN (Uncharacterized protein n=1 Tax=Novosphingobium sp. B1 TaxID=1938756 RepID=A0A1W1YNA0_9SPHN)

HSP 1 Score: 254 bits (650), Expect = 2.220e-83
Identity = 116/163 (71.17%), Postives = 135/163 (82.82%), Query Frame = 1 
Query:    1 IEAVLNVHPFHTIHCDFMQKMIPHARLIGTHRHHQQKPDLQWDPALIEDPATQKEFADLFDFSIPSGVDFVSDDDDVHVGSVLVRHRASGTVHVDDTLMYIDLPSLLQKMVPGPKLQFHPKLADGLEKRAGAADDYIRWAKDLAHNWTDTQTICAAHNGIIDL 489
            IEAVLNVH FHTIHC F+ + +PHARLIGT RHH + P L WDP+LIED AT  +FADLFDFSIP+GVDF+ +D+ VHV SVLVRHR S  VHVDDTLMY+DLP  ++K+VPGPKL+FHPKLA+GLEKR GAADDYIRWA+DL   W DTQ +CAAH GI+ L
Sbjct:   63 IEAVLNVHAFHTIHCKFVHEALPHARLIGTRRHHLKMPHLNWDPSLIEDNATHSQFADLFDFSIPAGVDFIPEDESVHVSSVLVRHRESRIVHVDDTLMYLDLPGFVEKLVPGPKLRFHPKLAEGLEKRPGAADDYIRWARDLGEAWADTQIVCAAHKGIVHL 225
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BLAST of mRNA_Ecto-sp8_S_contig106325.994.1 vs. uniprot
Match: A0A6L7GJ54_9SPHN (Uncharacterized protein n=2 Tax=Allopontixanthobacter confluentis TaxID=1849021 RepID=A0A6L7GJ54_9SPHN)

HSP 1 Score: 243 bits (621), Expect = 5.670e-79
Identity = 108/163 (66.26%), Postives = 134/163 (82.21%), Query Frame = 1 
Query:    1 IEAVLNVHPFHTIHCDFMQKMIPHARLIGTHRHHQQKPDLQWDPALIEDPATQKEFADLFDFSIPSGVDFVSDDDDVHVGSVLVRHRASGTVHVDDTLMYIDLPSLLQKMVPGPKLQFHPKLADGLEKRAGAADDYIRWAKDLAHNWTDTQTICAAHNGIIDL 489
            IEAVLNVHPFHT+HC  +++M+PHARLIGT RHH +   L WD  LIED ATQ++F+D FDFSIP GVDF+ +D+ +HV S++VRHR SG +HVDDTLM++D+P+LL+K  PGP+L+FHP LA GLEKRAGAADDYIRWAK L  +W DT+ ICAAH GI+ L
Sbjct:   63 IEAVLNVHPFHTVHCKSIKEMLPHARLIGTRRHHSEAAHLDWDTDLIEDEATQQQFSDTFDFSIPDGVDFIPEDESIHVSSIIVRHRESGIIHVDDTLMFLDVPALLEKFGPGPRLRFHPNLAGGLEKRAGAADDYIRWAKQLGQDWADTKIICAAHKGIMRL 225
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106325.994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2M7LCE6_9SPHN2.380e-9276.69Uncharacterized protein n=1 Tax=Sphingomonadales b... [more]
UPI001593D2845.570e-9177.30hypothetical protein n=1 Tax=Parasphingorhabdus fl... [more]
A0A220W4H9_9SPHN3.430e-9075.46Uncharacterized protein n=2 Tax=Sphingorhabdus sp.... [more]
A0A127MEI6_9SPHN1.300e-8976.69Uncharacterized protein n=2 Tax=Sphingorhabdus sp.... [more]
A0A2D3RGL7_9SPHN5.780e-8976.40Uncharacterized protein n=3 Tax=Sphingomonadaceae ... [more]
A0A258TJS5_9SPHN2.140e-8875.46Uncharacterized protein n=1 Tax=Sphingomonas sp. 2... [more]
A0A2G2CXG6_9SPHN5.000e-8771.17Uncharacterized protein n=1 Tax=Sphingopyxis sp. T... [more]
A0A653JEC6_9SPHN4.030e-8571.43Uncharacterized protein n=1 Tax=Sphingorhabdus sp.... [more]
A0A1W1YNA0_9SPHN2.220e-8371.17Uncharacterized protein n=1 Tax=Novosphingobium sp... [more]
A0A6L7GJ54_9SPHN5.670e-7966.26Uncharacterized protein n=2 Tax=Allopontixanthobac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106325contigEcto-sp8_S_contig106325:16..504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start0
Seed ortholog score242.3
Seed ortholog evalue1.6e-61
Seed eggNOG ortholog1123270.ATUR01000004_gene1601
Model size489
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs1R6ZN@1224,28J5X@1,2K4BV@204457,2U3I0@28211,2Z91N@2
Cds size489
Best tax levelSphingomonadales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143160.7538526-CDS-Ecto-sp8_S_contig106325:15..5041681143160.7538526-CDS-Ecto-sp8_S_contig106325:15..504Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106325 16..504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106325.994.1prot_Ecto-sp8_S_contig106325.994.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106325 16..504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106325.994.1

>prot_Ecto-sp8_S_contig106325.994.1 ID=prot_Ecto-sp8_S_contig106325.994.1|Name=mRNA_Ecto-sp8_S_contig106325.994.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=163bp
IEAVLNVHPFHTIHCDFMQKMIPHARLIGTHRHHQQKPDLQWDPALIEDP
ATQKEFADLFDFSIPSGVDFVSDDDDVHVGSVLVRHRASGTVHVDDTLMY
IDLPSLLQKMVPGPKLQFHPKLADGLEKRAGAADDYIRWAKDLAHNWTDT
QTICAAHNGIIDL
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mRNA from alignment at Ecto-sp8_S_contig106325:16..504-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106325.994.1 ID=mRNA_Ecto-sp8_S_contig106325.994.1|Name=mRNA_Ecto-sp8_S_contig106325.994.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=489bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106325:16..504- (Ectocarpus species8 EcLAC_412)
ATCGAGGCTGTTCTGAACGTGCATCCTTTCCACACCATTCACTGTGATTT
TATGCAGAAAATGATTCCCCACGCCAGGTTGATCGGGACACATCGCCATC
ACCAGCAGAAGCCGGATCTCCAGTGGGACCCTGCGCTCATCGAAGACCCG
GCCACCCAAAAGGAATTTGCTGATCTGTTCGACTTCTCGATTCCTTCCGG
TGTCGATTTTGTGTCGGATGATGATGACGTACATGTTGGTTCGGTTCTGG
TCCGGCATCGCGCCAGTGGGACCGTACATGTTGACGATACGTTGATGTAC
ATTGACCTGCCGTCCCTGCTGCAGAAAATGGTTCCCGGTCCGAAGTTACA
ATTTCATCCGAAGCTTGCGGACGGATTGGAAAAGCGCGCCGGGGCGGCTG
ACGACTATATCCGCTGGGCAAAGGATTTGGCGCACAATTGGACTGATACG
CAGACGATTTGCGCAGCACATAACGGGATAATCGACCTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106325:16..504-

>mRNA_Ecto-sp8_S_contig106325.994.1 ID=mRNA_Ecto-sp8_S_contig106325.994.1|Name=mRNA_Ecto-sp8_S_contig106325.994.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=489bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106325:16..504- (Ectocarpus species8 EcLAC_412)
ATCGAGGCTGTTCTGAACGTGCATCCTTTCCACACCATTCACTGTGATTT
TATGCAGAAAATGATTCCCCACGCCAGGTTGATCGGGACACATCGCCATC
ACCAGCAGAAGCCGGATCTCCAGTGGGACCCTGCGCTCATCGAAGACCCG
GCCACCCAAAAGGAATTTGCTGATCTGTTCGACTTCTCGATTCCTTCCGG
TGTCGATTTTGTGTCGGATGATGATGACGTACATGTTGGTTCGGTTCTGG
TCCGGCATCGCGCCAGTGGGACCGTACATGTTGACGATACGTTGATGTAC
ATTGACCTGCCGTCCCTGCTGCAGAAAATGGTTCCCGGTCCGAAGTTACA
ATTTCATCCGAAGCTTGCGGACGGATTGGAAAAGCGCGCCGGGGCGGCTG
ACGACTATATCCGCTGGGCAAAGGATTTGGCGCACAATTGGACTGATACG
CAGACGATTTGCGCAGCACATAACGGGATAATCGACCTG
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