mRNA_Ecto-sp8_S_contig10631.992.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10631.992.1
Unique NamemRNA_Ecto-sp8_S_contig10631.992.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10631.992.1 vs. uniprot
Match: D7FVY8_ECTSI (Zinc finger, FYVE domain containing 19, isoform CRA_g n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVY8_ECTSI)

HSP 1 Score: 294 bits (752), Expect = 6.190e-96
Identity = 170/180 (94.44%), Postives = 172/180 (95.56%), Query Frame = 2 
Query:  125 MPDMDKELAARLARLQGLSTSRSSGGHSTGVGFQERLNALSGHCPEGAEEDFNNRLASLSAARDTPSSAEXXXXXXXXXATGSDAGSKSATDAPGKRQYDVPEDFSDEWEDLDDLLATALEGSKGSPSTGEPSLLRESDVDGKLSELDVLLRAEASRATLGGSAPAERAAATVDQAVEAF 664
            MPD+DKELAARLARLQGLSTSRSSGGHSTGVG QERL+ALSGHCPEGAEEDFNNRLASLSAARDTPSSA XXXXXXXXX   SDAGSKSAT AP KRQYDVP DFSDEWEDLDDLLATALEGSKGSPSTGEPSLLRESDVDGKLSELDVLLRAEASRATLGGSAPAERAAATVDQAVEAF
Sbjct:    1 MPDIDKELAARLARLQGLSTSRSSGGHSTGVGLQERLDALSGHCPEGAEEDFNNRLASLSAARDTPSSAXXXXXXXXXXXXXSDAGSKSATAAPRKRQYDVPGDFSDEWEDLDDLLATALEGSKGSPSTGEPSLLRESDVDGKLSELDVLLRAEASRATLGGSAPAERAAATVDQAVEAF 180
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10631.992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVY8_ECTSI6.190e-9694.44Zinc finger, FYVE domain containing 19, isoform CR... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10631contigEcto-sp8_S_contig10631:5813..6765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size664
Hectar predicted targeting categoryother localisation
Exons2
Cds size540
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143160.6261773-UTR-Ecto-sp8_S_contig10631:5812..59361681143160.6261773-UTR-Ecto-sp8_S_contig10631:5812..5936Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10631 5813..5936 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143160.6385365-CDS-Ecto-sp8_S_contig10631:5936..62451681143160.6385365-CDS-Ecto-sp8_S_contig10631:5936..6245Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10631 5937..6245 +
1681143160.6530035-CDS-Ecto-sp8_S_contig10631:6534..67651681143160.6530035-CDS-Ecto-sp8_S_contig10631:6534..6765Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10631 6535..6765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10631.992.1prot_Ecto-sp8_S_contig10631.992.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10631 5937..6765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10631.992.1

>prot_Ecto-sp8_S_contig10631.992.1 ID=prot_Ecto-sp8_S_contig10631.992.1|Name=mRNA_Ecto-sp8_S_contig10631.992.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=180bp
MPDMDKELAARLARLQGLSTSRSSGGHSTGVGFQERLNALSGHCPEGAEE
DFNNRLASLSAARDTPSSAEDLNTRLSRLATGSDAGSKSATDAPGKRQYD
VPEDFSDEWEDLDDLLATALEGSKGSPSTGEPSLLRESDVDGKLSELDVL
LRAEASRATLGGSAPAERAAATVDQAVEAF
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mRNA from alignment at Ecto-sp8_S_contig10631:5813..6765+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10631.992.1 ID=mRNA_Ecto-sp8_S_contig10631.992.1|Name=mRNA_Ecto-sp8_S_contig10631.992.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=953bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10631:5813..6765+ (Ectocarpus species8 EcLAC_412)
GTGCCGGTGTACTCGTGAACTGCTGTCGCACATCCCTATTGATTGTAGCC
AATGCCGTAGGAGCAGTTGCTGAGCAGGAGAACGAAGCACTTTGCTAACG
TATCGTTTTCAAGTAAGAACGAATATGCCCGACATGGACAAGGAATTGGC
GGCGAGATTAGCCAGGCTTCAGGGATTGTCCACAAGCCGTAGTTCAGGAG
GTCATAGCACCGGAGTCGGGTTTCAAGAACGCCTGAACGCTTTATCTGGG
CACTGTCCAGAAGGTGCAGAGGAGGACTTCAACAACCGATTAGCTTCGCT
TTCAGCAGCAAGAGACACGCCATCCTCCGCGGAGGATCTTAACACACGGC
TCTCTAGGTTAGCGACCGGGAGCGATGCCGGGTCCAAGTCAGCTACGGAT
GCCCCTGGGAAACGGCAGTACGATGTACCAGAGGTGGGTACCGCTGATTA
TCTCTATGCATCTTTTGGATGTCTGCCAAACACCCTTCGCAGCAGTTGTG
TTACGCACTATTTGTTGGAGCTATGTATGTAGCCGATGTACTGCTGTAGG
ACTCTGCTGCTGTGCATCTGTGGAGAGGGTGTGGAACCGCCGGTCTTCGC
AACCCTGCAGATTCTTTAGTGGCAAGCCTTAATGTCGAGATTGAAGCGCG
AGATGTTTCCTGCTCGGCCTGCCCATAACACCCCATTCTCAACCTCGCAA
AACACGAAAACAACACATTCAGGACTTTTCCGACGAATGGGAAGACCTGG
ACGATTTGTTGGCAACCGCGCTTGAGGGAAGCAAAGGATCGCCTTCAACT
GGCGAGCCATCGCTCCTGAGGGAGTCCGATGTCGACGGGAAGCTCAGCGA
GCTCGATGTGCTGCTGAGAGCCGAAGCTTCTCGAGCAACACTAGGCGGCA
GCGCCCCAGCCGAACGCGCCGCGGCAACGGTCGACCAAGCGGTGGAGGCG
TTT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10631:5813..6765+

>mRNA_Ecto-sp8_S_contig10631.992.1 ID=mRNA_Ecto-sp8_S_contig10631.992.1|Name=mRNA_Ecto-sp8_S_contig10631.992.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=540bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10631:5813..6765+ (Ectocarpus species8 EcLAC_412)
ATGCCCGACATGGACAAGGAATTGGCGGCGAGATTAGCCAGGCTTCAGGG
ATTGTCCACAAGCCGTAGTTCAGGAGGTCATAGCACCGGAGTCGGGTTTC
AAGAACGCCTGAACGCTTTATCTGGGCACTGTCCAGAAGGTGCAGAGGAG
GACTTCAACAACCGATTAGCTTCGCTTTCAGCAGCAAGAGACACGCCATC
CTCCGCGGAGGATCTTAACACACGGCTCTCTAGGTTAGCGACCGGGAGCG
ATGCCGGGTCCAAGTCAGCTACGGATGCCCCTGGGAAACGGCAGTACGAT
GTACCAGAGGACTTTTCCGACGAATGGGAAGACCTGGACGATTTGTTGGC
AACCGCGCTTGAGGGAAGCAAAGGATCGCCTTCAACTGGCGAGCCATCGC
TCCTGAGGGAGTCCGATGTCGACGGGAAGCTCAGCGAGCTCGATGTGCTG
CTGAGAGCCGAAGCTTCTCGAGCAACACTAGGCGGCAGCGCCCCAGCCGA
ACGCGCCGCGGCAACGGTCGACCAAGCGGTGGAGGCGTTT
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